Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1164 and GFF1165 are separated by 88 nucleotides GFF1165 and GFF1166 are separated by 26 nucleotides
GFF1164 - 3'3'-cGAMP-specific phosphodiesterase 3, at 502,756 to 504,195
GFF1164
GFF1165 - Pyrethroid hydrolase, at 504,284 to 505,057
GFF1165
GFF1166 - putative GMC-type oxidoreductase, at 505,084 to 506,628
GFF1166
Position (kb) 504
505
506 Strain fitness (log2 ratio) -1
0
1 at 503.307 kb on - strand, within GFF1164 at 503.325 kb on + strand, within GFF1164 at 503.332 kb on + strand, within GFF1164 at 503.332 kb on + strand, within GFF1164 at 503.332 kb on + strand, within GFF1164 at 503.332 kb on + strand, within GFF1164 at 503.333 kb on - strand, within GFF1164 at 503.333 kb on - strand, within GFF1164 at 503.366 kb on + strand, within GFF1164 at 503.366 kb on + strand, within GFF1164 at 503.388 kb on + strand, within GFF1164 at 503.389 kb on - strand, within GFF1164 at 503.389 kb on - strand, within GFF1164 at 503.551 kb on - strand, within GFF1164 at 503.749 kb on + strand, within GFF1164 at 503.750 kb on - strand, within GFF1164 at 503.750 kb on - strand, within GFF1164 at 503.750 kb on - strand, within GFF1164 at 504.175 kb on + strand at 504.175 kb on + strand at 504.175 kb on + strand at 504.176 kb on - strand at 504.176 kb on - strand at 504.367 kb on + strand, within GFF1165 at 504.367 kb on + strand, within GFF1165 at 504.623 kb on + strand, within GFF1165 at 504.623 kb on + strand, within GFF1165 at 504.624 kb on - strand, within GFF1165 at 504.624 kb on - strand, within GFF1165 at 504.624 kb on - strand, within GFF1165 at 504.734 kb on + strand, within GFF1165 at 504.735 kb on - strand, within GFF1165 at 505.213 kb on + strand at 505.214 kb on - strand at 505.323 kb on - strand, within GFF1166 at 505.445 kb on - strand, within GFF1166 at 505.463 kb on - strand, within GFF1166 at 505.465 kb on + strand, within GFF1166 at 505.529 kb on + strand, within GFF1166 at 505.529 kb on + strand, within GFF1166 at 505.529 kb on + strand, within GFF1166 at 505.708 kb on + strand, within GFF1166 at 505.708 kb on + strand, within GFF1166
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 503,307 - GFF1164 0.38 -0.3 503,325 + GFF1164 0.40 +1.0 503,332 + GFF1164 0.40 -0.2 503,332 + GFF1164 0.40 +0.4 503,332 + GFF1164 0.40 +0.2 503,332 + GFF1164 0.40 +0.0 503,333 - GFF1164 0.40 +1.1 503,333 - GFF1164 0.40 -0.2 503,366 + GFF1164 0.42 -0.2 503,366 + GFF1164 0.42 +1.5 503,388 + GFF1164 0.44 +0.2 503,389 - GFF1164 0.44 -0.4 503,389 - GFF1164 0.44 -0.1 503,551 - GFF1164 0.55 -0.1 503,749 + GFF1164 0.69 +0.0 503,750 - GFF1164 0.69 -0.3 503,750 - GFF1164 0.69 +0.7 503,750 - GFF1164 0.69 -0.6 504,175 + -0.5 504,175 + -1.0 504,175 + +0.2 504,176 - -0.9 504,176 - -1.1 504,367 + GFF1165 0.11 -0.4 504,367 + GFF1165 0.11 -1.0 504,623 + GFF1165 0.44 +0.4 504,623 + GFF1165 0.44 -0.2 504,624 - GFF1165 0.44 -0.4 504,624 - GFF1165 0.44 +1.0 504,624 - GFF1165 0.44 -0.2 504,734 + GFF1165 0.58 -0.8 504,735 - GFF1165 0.58 -0.6 505,213 + +0.1 505,214 - -0.4 505,323 - GFF1166 0.15 -1.0 505,445 - GFF1166 0.23 -0.1 505,463 - GFF1166 0.25 +0.7 505,465 + GFF1166 0.25 +0.2 505,529 + GFF1166 0.29 +0.8 505,529 + GFF1166 0.29 -1.0 505,529 + GFF1166 0.29 +0.8 505,708 + GFF1166 0.40 +0.1 505,708 + GFF1166 0.40 +1.2
Or see this region's nucleotide sequence