Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05607

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05606 and BACOVA_05607 are separated by 24 nucleotidesBACOVA_05607 and BACOVA_05608 are separated by 30 nucleotidesBACOVA_05608 and BACOVA_05609 are separated by 84 nucleotides BACOVA_05606: BACOVA_05606 - hypothetical protein, at 1,121,981 to 1,124,014 _05606 BACOVA_05607: BACOVA_05607 - hypothetical protein, at 1,124,039 to 1,126,405 _05607 BACOVA_05608: BACOVA_05608 - hypothetical protein, at 1,126,436 to 1,126,540 _05608 BACOVA_05609: BACOVA_05609 - hypothetical protein, at 1,126,625 to 1,127,995 _05609 Position (kb) 1124 1125 1126 1127Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1123.102 kb on + strand, within BACOVA_05606at 1123.103 kb on - strand, within BACOVA_05606at 1123.153 kb on - strand, within BACOVA_05606at 1123.210 kb on - strand, within BACOVA_05606at 1123.271 kb on + strand, within BACOVA_05606at 1123.292 kb on + strand, within BACOVA_05606at 1123.292 kb on + strand, within BACOVA_05606at 1123.292 kb on + strand, within BACOVA_05606at 1123.293 kb on - strand, within BACOVA_05606at 1123.320 kb on - strand, within BACOVA_05606at 1123.322 kb on - strand, within BACOVA_05606at 1123.322 kb on - strand, within BACOVA_05606at 1123.322 kb on - strand, within BACOVA_05606at 1123.325 kb on + strand, within BACOVA_05606at 1123.325 kb on + strand, within BACOVA_05606at 1123.325 kb on + strand, within BACOVA_05606at 1123.331 kb on + strand, within BACOVA_05606at 1123.332 kb on - strand, within BACOVA_05606at 1123.421 kb on - strand, within BACOVA_05606at 1123.484 kb on + strand, within BACOVA_05606at 1123.495 kb on + strand, within BACOVA_05606at 1123.495 kb on + strand, within BACOVA_05606at 1123.496 kb on - strand, within BACOVA_05606at 1123.576 kb on + strand, within BACOVA_05606at 1123.596 kb on + strand, within BACOVA_05606at 1123.612 kb on + strand, within BACOVA_05606at 1123.638 kb on - strand, within BACOVA_05606at 1123.639 kb on + strand, within BACOVA_05606at 1123.727 kb on + strand, within BACOVA_05606at 1123.728 kb on - strand, within BACOVA_05606at 1123.729 kb on + strand, within BACOVA_05606at 1123.819 kb on + strandat 1123.820 kb on - strandat 1123.820 kb on - strandat 1123.839 kb on + strandat 1123.839 kb on + strandat 1123.861 kb on + strandat 1123.863 kb on + strandat 1123.864 kb on - strandat 1123.897 kb on - strandat 1123.943 kb on - strandat 1123.976 kb on - strandat 1123.976 kb on - strandat 1123.976 kb on - strandat 1124.018 kb on + strandat 1124.019 kb on - strandat 1124.019 kb on - strandat 1124.020 kb on + strandat 1124.022 kb on + strandat 1124.022 kb on + strandat 1124.033 kb on + strandat 1124.063 kb on - strandat 1124.066 kb on + strandat 1124.067 kb on - strandat 1124.102 kb on - strandat 1124.107 kb on - strandat 1124.136 kb on - strandat 1124.136 kb on - strandat 1124.137 kb on + strandat 1124.142 kb on + strandat 1124.222 kb on + strandat 1124.223 kb on - strandat 1124.331 kb on + strand, within BACOVA_05607at 1124.336 kb on + strand, within BACOVA_05607at 1124.362 kb on + strand, within BACOVA_05607at 1124.367 kb on + strand, within BACOVA_05607at 1124.393 kb on + strand, within BACOVA_05607at 1124.394 kb on - strand, within BACOVA_05607at 1124.404 kb on + strand, within BACOVA_05607at 1124.404 kb on + strand, within BACOVA_05607at 1124.405 kb on - strand, within BACOVA_05607at 1124.405 kb on - strand, within BACOVA_05607at 1124.426 kb on + strand, within BACOVA_05607at 1124.451 kb on + strand, within BACOVA_05607at 1124.454 kb on + strand, within BACOVA_05607at 1124.467 kb on + strand, within BACOVA_05607at 1124.571 kb on + strand, within BACOVA_05607at 1124.596 kb on + strand, within BACOVA_05607at 1124.614 kb on - strand, within BACOVA_05607at 1124.634 kb on - strand, within BACOVA_05607at 1124.636 kb on - strand, within BACOVA_05607at 1124.697 kb on + strand, within BACOVA_05607at 1124.708 kb on + strand, within BACOVA_05607at 1124.709 kb on - strand, within BACOVA_05607at 1124.709 kb on - strand, within BACOVA_05607at 1124.709 kb on - strand, within BACOVA_05607at 1124.734 kb on + strand, within BACOVA_05607at 1124.779 kb on + strand, within BACOVA_05607at 1124.785 kb on + strand, within BACOVA_05607at 1124.803 kb on + strand, within BACOVA_05607at 1124.809 kb on + strand, within BACOVA_05607at 1124.850 kb on + strand, within BACOVA_05607at 1124.851 kb on - strand, within BACOVA_05607at 1124.879 kb on - strand, within BACOVA_05607at 1124.965 kb on + strand, within BACOVA_05607at 1124.965 kb on + strand, within BACOVA_05607at 1124.965 kb on + strand, within BACOVA_05607at 1125.007 kb on + strand, within BACOVA_05607at 1125.039 kb on + strand, within BACOVA_05607at 1125.107 kb on + strand, within BACOVA_05607at 1125.107 kb on + strand, within BACOVA_05607at 1125.108 kb on - strand, within BACOVA_05607at 1125.148 kb on + strand, within BACOVA_05607at 1125.169 kb on - strand, within BACOVA_05607at 1125.169 kb on - strand, within BACOVA_05607at 1125.173 kb on - strand, within BACOVA_05607at 1125.175 kb on - strand, within BACOVA_05607at 1125.195 kb on - strand, within BACOVA_05607at 1125.197 kb on - strand, within BACOVA_05607at 1125.199 kb on + strand, within BACOVA_05607at 1125.278 kb on - strand, within BACOVA_05607at 1125.344 kb on - strand, within BACOVA_05607at 1125.379 kb on + strand, within BACOVA_05607at 1125.409 kb on - strand, within BACOVA_05607at 1125.497 kb on + strand, within BACOVA_05607at 1125.533 kb on - strand, within BACOVA_05607at 1125.564 kb on - strand, within BACOVA_05607at 1125.564 kb on - strand, within BACOVA_05607at 1125.577 kb on - strand, within BACOVA_05607at 1125.596 kb on + strand, within BACOVA_05607at 1125.597 kb on - strand, within BACOVA_05607at 1125.598 kb on + strand, within BACOVA_05607at 1125.599 kb on - strand, within BACOVA_05607at 1125.651 kb on - strand, within BACOVA_05607at 1125.652 kb on + strand, within BACOVA_05607at 1125.653 kb on - strand, within BACOVA_05607at 1125.685 kb on + strand, within BACOVA_05607at 1125.689 kb on - strand, within BACOVA_05607at 1125.708 kb on + strand, within BACOVA_05607at 1125.709 kb on - strand, within BACOVA_05607at 1125.770 kb on - strand, within BACOVA_05607at 1125.796 kb on + strand, within BACOVA_05607at 1125.797 kb on - strand, within BACOVA_05607at 1125.903 kb on - strand, within BACOVA_05607at 1125.932 kb on - strand, within BACOVA_05607at 1125.993 kb on + strand, within BACOVA_05607at 1125.993 kb on + strand, within BACOVA_05607at 1125.997 kb on + strand, within BACOVA_05607at 1125.998 kb on - strand, within BACOVA_05607at 1126.004 kb on + strand, within BACOVA_05607at 1126.042 kb on + strand, within BACOVA_05607at 1126.043 kb on - strand, within BACOVA_05607at 1126.043 kb on - strand, within BACOVA_05607at 1126.104 kb on - strand, within BACOVA_05607at 1126.105 kb on + strand, within BACOVA_05607at 1126.155 kb on + strand, within BACOVA_05607at 1126.156 kb on - strand, within BACOVA_05607at 1126.156 kb on - strand, within BACOVA_05607at 1126.248 kb on + strandat 1126.280 kb on + strandat 1126.280 kb on + strandat 1126.316 kb on + strandat 1126.350 kb on + strandat 1126.362 kb on + strandat 1126.363 kb on - strandat 1126.363 kb on - strandat 1126.394 kb on - strandat 1126.494 kb on + strand, within BACOVA_05608at 1126.495 kb on - strand, within BACOVA_05608at 1126.505 kb on - strand, within BACOVA_05608at 1126.511 kb on + strand, within BACOVA_05608at 1126.519 kb on + strand, within BACOVA_05608at 1126.519 kb on + strand, within BACOVA_05608at 1126.520 kb on - strand, within BACOVA_05608at 1126.584 kb on - strandat 1126.584 kb on - strandat 1126.584 kb on - strandat 1126.656 kb on + strandat 1126.695 kb on + strandat 1126.739 kb on - strandat 1126.800 kb on - strand, within BACOVA_05609at 1126.801 kb on + strand, within BACOVA_05609at 1126.802 kb on - strand, within BACOVA_05609at 1126.814 kb on - strand, within BACOVA_05609at 1126.816 kb on + strand, within BACOVA_05609at 1126.816 kb on + strand, within BACOVA_05609at 1126.855 kb on - strand, within BACOVA_05609at 1126.904 kb on - strand, within BACOVA_05609at 1126.967 kb on + strand, within BACOVA_05609at 1126.969 kb on + strand, within BACOVA_05609at 1126.970 kb on - strand, within BACOVA_05609at 1126.972 kb on + strand, within BACOVA_05609at 1126.972 kb on + strand, within BACOVA_05609at 1126.972 kb on + strand, within BACOVA_05609at 1127.023 kb on + strand, within BACOVA_05609at 1127.093 kb on - strand, within BACOVA_05609at 1127.137 kb on + strand, within BACOVA_05609at 1127.137 kb on + strand, within BACOVA_05609at 1127.215 kb on + strand, within BACOVA_05609at 1127.215 kb on + strand, within BACOVA_05609at 1127.216 kb on - strand, within BACOVA_05609at 1127.216 kb on - strand, within BACOVA_05609at 1127.251 kb on + strand, within BACOVA_05609at 1127.251 kb on + strand, within BACOVA_05609at 1127.253 kb on + strand, within BACOVA_05609at 1127.254 kb on - strand, within BACOVA_05609at 1127.317 kb on + strand, within BACOVA_05609at 1127.318 kb on - strand, within BACOVA_05609at 1127.331 kb on + strand, within BACOVA_05609at 1127.335 kb on - strand, within BACOVA_05609at 1127.344 kb on - strand, within BACOVA_05609at 1127.348 kb on - strand, within BACOVA_05609at 1127.352 kb on + strand, within BACOVA_05609at 1127.352 kb on + strand, within BACOVA_05609at 1127.353 kb on - strand, within BACOVA_05609at 1127.369 kb on - strand, within BACOVA_05609at 1127.401 kb on + strand, within BACOVA_05609

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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1,123,102 + BACOVA_05606 0.55 +0.0
1,123,103 - BACOVA_05606 0.55 -2.4
1,123,153 - BACOVA_05606 0.58 +2.0
1,123,210 - BACOVA_05606 0.60 -0.3
1,123,271 + BACOVA_05606 0.63 +0.8
1,123,292 + BACOVA_05606 0.64 -1.1
1,123,292 + BACOVA_05606 0.64 +0.8
1,123,292 + BACOVA_05606 0.64 -0.9
1,123,293 - BACOVA_05606 0.65 -1.2
1,123,320 - BACOVA_05606 0.66 +0.5
1,123,322 - BACOVA_05606 0.66 -1.1
1,123,322 - BACOVA_05606 0.66 -2.5
1,123,322 - BACOVA_05606 0.66 -1.5
1,123,325 + BACOVA_05606 0.66 -0.3
1,123,325 + BACOVA_05606 0.66 +1.8
1,123,325 + BACOVA_05606 0.66 +1.5
1,123,331 + BACOVA_05606 0.66 -1.4
1,123,332 - BACOVA_05606 0.66 +2.9
1,123,421 - BACOVA_05606 0.71 +0.4
1,123,484 + BACOVA_05606 0.74 -2.0
1,123,495 + BACOVA_05606 0.74 +0.6
1,123,495 + BACOVA_05606 0.74 -2.1
1,123,496 - BACOVA_05606 0.74 -0.5
1,123,576 + BACOVA_05606 0.78 +1.8
1,123,596 + BACOVA_05606 0.79 -3.1
1,123,612 + BACOVA_05606 0.80 +1.5
1,123,638 - BACOVA_05606 0.81 -3.5
1,123,639 + BACOVA_05606 0.82 -0.2
1,123,727 + BACOVA_05606 0.86 -1.5
1,123,728 - BACOVA_05606 0.86 -2.4
1,123,729 + BACOVA_05606 0.86 -1.4
1,123,819 + +2.1
1,123,820 - +0.3
1,123,820 - +0.0
1,123,839 + -1.0
1,123,839 + +3.1
1,123,861 + +0.5
1,123,863 + -2.4
1,123,864 - -0.7
1,123,897 - -1.9
1,123,943 - -1.4
1,123,976 - -1.9
1,123,976 - +1.0
1,123,976 - -0.1
1,124,018 + -1.2
1,124,019 - -3.9
1,124,019 - +1.2
1,124,020 + -0.6
1,124,022 + +0.4
1,124,022 + -0.0
1,124,033 + +1.0
1,124,063 - +0.6
1,124,066 + -1.0
1,124,067 - +0.5
1,124,102 - -0.8
1,124,107 - +0.4
1,124,136 - +2.0
1,124,136 - -0.6
1,124,137 + +2.3
1,124,142 + +1.7
1,124,222 + -0.4
1,124,223 - -0.7
1,124,331 + BACOVA_05607 0.12 -0.8
1,124,336 + BACOVA_05607 0.13 -0.9
1,124,362 + BACOVA_05607 0.14 -2.5
1,124,367 + BACOVA_05607 0.14 +1.7
1,124,393 + BACOVA_05607 0.15 -3.0
1,124,394 - BACOVA_05607 0.15 +1.0
1,124,404 + BACOVA_05607 0.15 -3.2
1,124,404 + BACOVA_05607 0.15 -0.8
1,124,405 - BACOVA_05607 0.15 +0.7
1,124,405 - BACOVA_05607 0.15 +0.0
1,124,426 + BACOVA_05607 0.16 -1.0
1,124,451 + BACOVA_05607 0.17 -0.6
1,124,454 + BACOVA_05607 0.18 +0.5
1,124,467 + BACOVA_05607 0.18 -0.1
1,124,571 + BACOVA_05607 0.22 -2.6
1,124,596 + BACOVA_05607 0.24 +1.3
1,124,614 - BACOVA_05607 0.24 +0.6
1,124,634 - BACOVA_05607 0.25 -1.4
1,124,636 - BACOVA_05607 0.25 +1.1
1,124,697 + BACOVA_05607 0.28 -1.8
1,124,708 + BACOVA_05607 0.28 -0.4
1,124,709 - BACOVA_05607 0.28 +0.2
1,124,709 - BACOVA_05607 0.28 -2.1
1,124,709 - BACOVA_05607 0.28 +1.7
1,124,734 + BACOVA_05607 0.29 +1.4
1,124,779 + BACOVA_05607 0.31 -1.2
1,124,785 + BACOVA_05607 0.32 -2.4
1,124,803 + BACOVA_05607 0.32 -0.4
1,124,809 + BACOVA_05607 0.33 +1.1
1,124,850 + BACOVA_05607 0.34 -0.2
1,124,851 - BACOVA_05607 0.34 -1.0
1,124,879 - BACOVA_05607 0.35 +0.6
1,124,965 + BACOVA_05607 0.39 +1.0
1,124,965 + BACOVA_05607 0.39 -1.2
1,124,965 + BACOVA_05607 0.39 +3.6
1,125,007 + BACOVA_05607 0.41 +0.5
1,125,039 + BACOVA_05607 0.42 -0.1
1,125,107 + BACOVA_05607 0.45 -1.6
1,125,107 + BACOVA_05607 0.45 -0.3
1,125,108 - BACOVA_05607 0.45 -1.2
1,125,148 + BACOVA_05607 0.47 +0.4
1,125,169 - BACOVA_05607 0.48 +1.5
1,125,169 - BACOVA_05607 0.48 -0.4
1,125,173 - BACOVA_05607 0.48 +2.9
1,125,175 - BACOVA_05607 0.48 +1.0
1,125,195 - BACOVA_05607 0.49 +0.5
1,125,197 - BACOVA_05607 0.49 +0.1
1,125,199 + BACOVA_05607 0.49 -2.9
1,125,278 - BACOVA_05607 0.52 -1.0
1,125,344 - BACOVA_05607 0.55 -2.3
1,125,379 + BACOVA_05607 0.57 -1.3
1,125,409 - BACOVA_05607 0.58 -0.6
1,125,497 + BACOVA_05607 0.62 +0.2
1,125,533 - BACOVA_05607 0.63 +2.1
1,125,564 - BACOVA_05607 0.64 -0.3
1,125,564 - BACOVA_05607 0.64 +0.3
1,125,577 - BACOVA_05607 0.65 +0.2
1,125,596 + BACOVA_05607 0.66 -1.1
1,125,597 - BACOVA_05607 0.66 -1.4
1,125,598 + BACOVA_05607 0.66 +0.6
1,125,599 - BACOVA_05607 0.66 +0.3
1,125,651 - BACOVA_05607 0.68 +1.8
1,125,652 + BACOVA_05607 0.68 +0.2
1,125,653 - BACOVA_05607 0.68 +0.2
1,125,685 + BACOVA_05607 0.70 +1.0
1,125,689 - BACOVA_05607 0.70 -1.9
1,125,708 + BACOVA_05607 0.71 +1.4
1,125,709 - BACOVA_05607 0.71 -3.1
1,125,770 - BACOVA_05607 0.73 +0.7
1,125,796 + BACOVA_05607 0.74 -0.2
1,125,797 - BACOVA_05607 0.74 -0.0
1,125,903 - BACOVA_05607 0.79 +0.1
1,125,932 - BACOVA_05607 0.80 -0.3
1,125,993 + BACOVA_05607 0.83 -0.4
1,125,993 + BACOVA_05607 0.83 +1.8
1,125,997 + BACOVA_05607 0.83 -0.9
1,125,998 - BACOVA_05607 0.83 -0.8
1,126,004 + BACOVA_05607 0.83 -2.3
1,126,042 + BACOVA_05607 0.85 +0.0
1,126,043 - BACOVA_05607 0.85 -0.8
1,126,043 - BACOVA_05607 0.85 -0.4
1,126,104 - BACOVA_05607 0.87 +0.7
1,126,105 + BACOVA_05607 0.87 -0.2
1,126,155 + BACOVA_05607 0.89 -0.4
1,126,156 - BACOVA_05607 0.89 -3.7
1,126,156 - BACOVA_05607 0.89 -2.2
1,126,248 + -2.7
1,126,280 + +1.2
1,126,280 + -0.2
1,126,316 + -0.4
1,126,350 + +2.2
1,126,362 + +0.2
1,126,363 - +0.2
1,126,363 - -2.9
1,126,394 - +1.2
1,126,494 + BACOVA_05608 0.55 +0.4
1,126,495 - BACOVA_05608 0.56 -0.5
1,126,505 - BACOVA_05608 0.66 +0.5
1,126,511 + BACOVA_05608 0.71 +2.3
1,126,519 + BACOVA_05608 0.79 -0.9
1,126,519 + BACOVA_05608 0.79 -1.9
1,126,520 - BACOVA_05608 0.80 +1.9
1,126,584 - -2.0
1,126,584 - +2.1
1,126,584 - -0.8
1,126,656 + -0.9
1,126,695 + +2.2
1,126,739 - +0.6
1,126,800 - BACOVA_05609 0.13 -1.7
1,126,801 + BACOVA_05609 0.13 -0.1
1,126,802 - BACOVA_05609 0.13 +1.3
1,126,814 - BACOVA_05609 0.14 -2.8
1,126,816 + BACOVA_05609 0.14 +0.3
1,126,816 + BACOVA_05609 0.14 -2.0
1,126,855 - BACOVA_05609 0.17 -1.8
1,126,904 - BACOVA_05609 0.20 +1.5
1,126,967 + BACOVA_05609 0.25 +0.9
1,126,969 + BACOVA_05609 0.25 -1.9
1,126,970 - BACOVA_05609 0.25 +0.3
1,126,972 + BACOVA_05609 0.25 +1.6
1,126,972 + BACOVA_05609 0.25 -0.4
1,126,972 + BACOVA_05609 0.25 -0.4
1,127,023 + BACOVA_05609 0.29 +1.9
1,127,093 - BACOVA_05609 0.34 +0.1
1,127,137 + BACOVA_05609 0.37 -2.1
1,127,137 + BACOVA_05609 0.37 +1.2
1,127,215 + BACOVA_05609 0.43 +0.3
1,127,215 + BACOVA_05609 0.43 -0.4
1,127,216 - BACOVA_05609 0.43 +0.2
1,127,216 - BACOVA_05609 0.43 +1.4
1,127,251 + BACOVA_05609 0.46 +1.5
1,127,251 + BACOVA_05609 0.46 +1.5
1,127,253 + BACOVA_05609 0.46 +0.7
1,127,254 - BACOVA_05609 0.46 +0.6
1,127,317 + BACOVA_05609 0.50 +0.2
1,127,318 - BACOVA_05609 0.51 +1.2
1,127,331 + BACOVA_05609 0.51 +1.2
1,127,335 - BACOVA_05609 0.52 +0.2
1,127,344 - BACOVA_05609 0.52 +0.5
1,127,348 - BACOVA_05609 0.53 -0.9
1,127,352 + BACOVA_05609 0.53 -0.1
1,127,352 + BACOVA_05609 0.53 +2.1
1,127,353 - BACOVA_05609 0.53 -0.6
1,127,369 - BACOVA_05609 0.54 +0.2
1,127,401 + BACOVA_05609 0.57 -1.9

Or see this region's nucleotide sequence