Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05585 and BACOVA_05586 are separated by 98 nucleotides BACOVA_05586 and BACOVA_05587 overlap by 14 nucleotides BACOVA_05587 and BACOVA_05588 are separated by 23 nucleotides BACOVA_05588 and BACOVA_05589 overlap by 4 nucleotides BACOVA_05589 and BACOVA_05590 overlap by 12 nucleotides
BACOVA_05585: BACOVA_05585 - DNA-binding helix-turn-helix protein, at 1,105,417 to 1,105,719
_05585
BACOVA_05586: BACOVA_05586 - toxin-antitoxin system, toxin component, RelE family, at 1,105,818 to 1,106,111
_05586
BACOVA_05587: BACOVA_05587 - DNA-binding helix-turn-helix protein, at 1,106,098 to 1,106,481
_05587
BACOVA_05588: BACOVA_05588 - hypothetical protein, at 1,106,505 to 1,106,594
_05588
BACOVA_05589: BACOVA_05589 - hypothetical protein, at 1,106,591 to 1,106,749
_05589
BACOVA_05590: BACOVA_05590 - VirE N-terminal domain protein, at 1,106,738 to 1,108,855
_05590
Position (kb) 1106
1107 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1105.615 kb on + strand, within BACOVA_05585 at 1105.615 kb on + strand, within BACOVA_05585 at 1105.615 kb on + strand, within BACOVA_05585 at 1105.651 kb on - strand, within BACOVA_05585 at 1105.692 kb on + strand at 1105.715 kb on + strand at 1105.762 kb on - strand at 1105.804 kb on + strand at 1105.812 kb on + strand at 1105.826 kb on - strand at 1105.952 kb on + strand, within BACOVA_05586 at 1105.952 kb on + strand, within BACOVA_05586 at 1105.969 kb on + strand, within BACOVA_05586 at 1105.970 kb on - strand, within BACOVA_05586 at 1105.983 kb on + strand, within BACOVA_05586 at 1106.006 kb on + strand, within BACOVA_05586 at 1106.042 kb on - strand, within BACOVA_05586 at 1106.054 kb on + strand, within BACOVA_05586 at 1106.054 kb on + strand, within BACOVA_05586 at 1106.082 kb on + strand at 1106.087 kb on + strand at 1106.087 kb on + strand at 1106.092 kb on + strand at 1106.316 kb on + strand, within BACOVA_05587 at 1106.317 kb on - strand, within BACOVA_05587 at 1106.320 kb on + strand, within BACOVA_05587 at 1106.320 kb on + strand, within BACOVA_05587 at 1106.321 kb on - strand, within BACOVA_05587 at 1106.390 kb on - strand, within BACOVA_05587 at 1106.460 kb on + strand at 1106.479 kb on + strand at 1106.479 kb on + strand at 1106.527 kb on + strand, within BACOVA_05588 at 1106.655 kb on + strand, within BACOVA_05589 at 1106.745 kb on + strand at 1106.748 kb on - strand at 1106.748 kb on - strand at 1106.779 kb on + strand at 1106.779 kb on + strand at 1106.877 kb on + strand at 1106.884 kb on - strand at 1106.966 kb on - strand, within BACOVA_05590 at 1107.005 kb on + strand, within BACOVA_05590 at 1107.084 kb on + strand, within BACOVA_05590 at 1107.084 kb on + strand, within BACOVA_05590 at 1107.100 kb on - strand, within BACOVA_05590 at 1107.111 kb on + strand, within BACOVA_05590 at 1107.111 kb on + strand, within BACOVA_05590 at 1107.223 kb on + strand, within BACOVA_05590 at 1107.224 kb on - strand, within BACOVA_05590 at 1107.301 kb on + strand, within BACOVA_05590 at 1107.362 kb on + strand, within BACOVA_05590 at 1107.363 kb on - strand, within BACOVA_05590 at 1107.397 kb on + strand, within BACOVA_05590 at 1107.398 kb on - strand, within BACOVA_05590 at 1107.449 kb on - strand, within BACOVA_05590 at 1107.454 kb on + strand, within BACOVA_05590 at 1107.454 kb on + strand, within BACOVA_05590 at 1107.549 kb on + strand, within BACOVA_05590 at 1107.549 kb on + strand, within BACOVA_05590 at 1107.586 kb on + strand, within BACOVA_05590 at 1107.587 kb on - strand, within BACOVA_05590 at 1107.589 kb on + strand, within BACOVA_05590 at 1107.590 kb on - strand, within BACOVA_05590
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 1,105,615 + BACOVA_05585 0.65 -3.0 1,105,615 + BACOVA_05585 0.65 -0.6 1,105,615 + BACOVA_05585 0.65 -1.9 1,105,651 - BACOVA_05585 0.77 -3.7 1,105,692 + -1.7 1,105,715 + -1.8 1,105,762 - +0.2 1,105,804 + +2.6 1,105,812 + +0.4 1,105,826 - +2.6 1,105,952 + BACOVA_05586 0.46 +0.8 1,105,952 + BACOVA_05586 0.46 +1.0 1,105,969 + BACOVA_05586 0.51 +1.4 1,105,970 - BACOVA_05586 0.52 +0.7 1,105,983 + BACOVA_05586 0.56 +0.2 1,106,006 + BACOVA_05586 0.64 -0.1 1,106,042 - BACOVA_05586 0.76 +1.8 1,106,054 + BACOVA_05586 0.80 -0.8 1,106,054 + BACOVA_05586 0.80 +1.0 1,106,082 + +0.5 1,106,087 + -0.2 1,106,087 + +1.0 1,106,092 + -0.5 1,106,316 + BACOVA_05587 0.57 -3.8 1,106,317 - BACOVA_05587 0.57 -3.6 1,106,320 + BACOVA_05587 0.58 -0.9 1,106,320 + BACOVA_05587 0.58 -0.4 1,106,321 - BACOVA_05587 0.58 -2.9 1,106,390 - BACOVA_05587 0.76 -2.8 1,106,460 + -2.0 1,106,479 + -0.2 1,106,479 + -1.1 1,106,527 + BACOVA_05588 0.24 -0.4 1,106,655 + BACOVA_05589 0.40 +1.0 1,106,745 + +1.0 1,106,748 - +0.8 1,106,748 - -1.6 1,106,779 + -1.0 1,106,779 + -2.4 1,106,877 + -2.1 1,106,884 - +2.6 1,106,966 - BACOVA_05590 0.11 +0.1 1,107,005 + BACOVA_05590 0.13 -1.7 1,107,084 + BACOVA_05590 0.16 +1.1 1,107,084 + BACOVA_05590 0.16 +0.2 1,107,100 - BACOVA_05590 0.17 +0.2 1,107,111 + BACOVA_05590 0.18 -3.0 1,107,111 + BACOVA_05590 0.18 +2.0 1,107,223 + BACOVA_05590 0.23 -0.7 1,107,224 - BACOVA_05590 0.23 -1.8 1,107,301 + BACOVA_05590 0.27 +1.9 1,107,362 + BACOVA_05590 0.29 +2.0 1,107,363 - BACOVA_05590 0.30 -1.0 1,107,397 + BACOVA_05590 0.31 -0.1 1,107,398 - BACOVA_05590 0.31 -0.6 1,107,449 - BACOVA_05590 0.34 +0.6 1,107,454 + BACOVA_05590 0.34 +2.0 1,107,454 + BACOVA_05590 0.34 -2.2 1,107,549 + BACOVA_05590 0.38 -0.2 1,107,549 + BACOVA_05590 0.38 +0.2 1,107,586 + BACOVA_05590 0.40 -2.3 1,107,587 - BACOVA_05590 0.40 -0.5 1,107,589 + BACOVA_05590 0.40 +1.2 1,107,590 - BACOVA_05590 0.40 -0.4
Or see this region's nucleotide sequence