Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05285 and BACOVA_05286 are separated by 33 nucleotides BACOVA_05286 and BACOVA_05287 are separated by 147 nucleotides BACOVA_05287 and BACOVA_05288 are separated by 310 nucleotides
BACOVA_05285: BACOVA_05285 - amino acid carrier protein, at 778,698 to 780,086
_05285
BACOVA_05286: BACOVA_05286 - divergent AAA domain protein, at 780,120 to 780,767
_05286
BACOVA_05287: BACOVA_05287 - hypothetical protein, at 780,915 to 781,091
_05287
BACOVA_05288: BACOVA_05288 - putative DNA modification/repair radical SAM protein, at 781,402 to 782,673
_05288
Position (kb) 780
781 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 779.142 kb on - strand, within BACOVA_05285 at 779.153 kb on + strand, within BACOVA_05285 at 779.154 kb on - strand, within BACOVA_05285 at 779.169 kb on - strand, within BACOVA_05285 at 779.169 kb on - strand, within BACOVA_05285 at 779.172 kb on + strand, within BACOVA_05285 at 779.172 kb on + strand, within BACOVA_05285 at 779.173 kb on - strand, within BACOVA_05285 at 779.190 kb on - strand, within BACOVA_05285 at 779.190 kb on - strand, within BACOVA_05285 at 779.324 kb on + strand, within BACOVA_05285 at 779.405 kb on + strand, within BACOVA_05285 at 779.437 kb on - strand, within BACOVA_05285 at 779.454 kb on - strand, within BACOVA_05285 at 779.454 kb on - strand, within BACOVA_05285 at 779.456 kb on + strand, within BACOVA_05285 at 779.465 kb on + strand, within BACOVA_05285 at 779.468 kb on + strand, within BACOVA_05285 at 779.544 kb on + strand, within BACOVA_05285 at 779.545 kb on - strand, within BACOVA_05285 at 779.546 kb on + strand, within BACOVA_05285 at 779.546 kb on + strand, within BACOVA_05285 at 779.547 kb on - strand, within BACOVA_05285 at 779.547 kb on - strand, within BACOVA_05285 at 779.549 kb on + strand, within BACOVA_05285 at 779.549 kb on + strand, within BACOVA_05285 at 779.550 kb on - strand, within BACOVA_05285 at 779.595 kb on - strand, within BACOVA_05285 at 779.634 kb on + strand, within BACOVA_05285 at 779.634 kb on + strand, within BACOVA_05285 at 779.635 kb on - strand, within BACOVA_05285 at 779.637 kb on + strand, within BACOVA_05285 at 779.688 kb on - strand, within BACOVA_05285 at 779.690 kb on - strand, within BACOVA_05285 at 779.692 kb on + strand, within BACOVA_05285 at 779.692 kb on + strand, within BACOVA_05285 at 779.727 kb on + strand, within BACOVA_05285 at 779.737 kb on - strand, within BACOVA_05285 at 779.808 kb on - strand, within BACOVA_05285 at 779.907 kb on + strand, within BACOVA_05285 at 779.908 kb on - strand, within BACOVA_05285 at 779.950 kb on - strand at 780.025 kb on - strand at 780.027 kb on + strand at 780.028 kb on - strand at 780.032 kb on + strand at 780.032 kb on + strand at 780.033 kb on - strand at 780.036 kb on - strand at 780.039 kb on + strand at 780.045 kb on - strand at 780.046 kb on + strand at 780.046 kb on + strand at 780.047 kb on - strand at 780.047 kb on - strand at 780.047 kb on - strand at 780.058 kb on - strand at 780.087 kb on - strand at 780.091 kb on - strand at 780.097 kb on + strand at 780.101 kb on + strand at 780.102 kb on - strand at 780.103 kb on + strand at 780.149 kb on + strand at 780.244 kb on + strand, within BACOVA_05286 at 780.261 kb on + strand, within BACOVA_05286 at 780.363 kb on + strand, within BACOVA_05286 at 780.363 kb on + strand, within BACOVA_05286 at 780.403 kb on + strand, within BACOVA_05286 at 780.495 kb on + strand, within BACOVA_05286 at 780.496 kb on - strand, within BACOVA_05286 at 780.496 kb on - strand, within BACOVA_05286 at 780.499 kb on + strand, within BACOVA_05286 at 780.562 kb on + strand, within BACOVA_05286 at 780.596 kb on + strand, within BACOVA_05286 at 780.596 kb on + strand, within BACOVA_05286 at 780.621 kb on + strand, within BACOVA_05286 at 780.622 kb on - strand, within BACOVA_05286 at 780.622 kb on - strand, within BACOVA_05286 at 780.738 kb on + strand at 780.739 kb on - strand at 780.739 kb on - strand at 780.739 kb on - strand at 780.740 kb on + strand at 780.740 kb on + strand at 780.740 kb on + strand at 780.741 kb on - strand at 780.743 kb on - strand at 780.743 kb on - strand at 780.743 kb on - strand at 780.749 kb on + strand at 780.771 kb on + strand at 780.783 kb on + strand at 780.890 kb on + strand at 781.020 kb on - strand, within BACOVA_05287 at 781.020 kb on - strand, within BACOVA_05287 at 781.082 kb on + strand at 781.111 kb on - strand at 781.128 kb on - strand at 781.139 kb on - strand at 781.141 kb on - strand at 781.184 kb on + strand at 781.184 kb on + strand at 781.204 kb on - strand at 781.208 kb on - strand at 781.208 kb on - strand at 781.272 kb on + strand at 781.273 kb on - strand at 781.306 kb on + strand at 781.316 kb on - strand at 781.350 kb on + strand at 781.351 kb on - strand at 781.351 kb on - strand at 781.353 kb on - strand at 781.367 kb on - strand at 781.374 kb on - strand at 781.376 kb on - strand at 781.421 kb on + strand at 781.457 kb on - strand at 781.498 kb on - strand at 781.610 kb on - strand, within BACOVA_05288 at 781.710 kb on + strand, within BACOVA_05288 at 781.711 kb on - strand, within BACOVA_05288 at 781.711 kb on - strand, within BACOVA_05288 at 781.711 kb on - strand, within BACOVA_05288 at 781.714 kb on + strand, within BACOVA_05288 at 781.715 kb on - strand, within BACOVA_05288 at 781.715 kb on - strand, within BACOVA_05288 at 781.763 kb on - strand, within BACOVA_05288 at 781.764 kb on + strand, within BACOVA_05288 at 781.764 kb on + strand, within BACOVA_05288 at 781.764 kb on + strand, within BACOVA_05288 at 781.765 kb on - strand, within BACOVA_05288 at 781.765 kb on - strand, within BACOVA_05288
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 779,142 - BACOVA_05285 0.32 -2.0 779,153 + BACOVA_05285 0.33 +2.5 779,154 - BACOVA_05285 0.33 +0.4 779,169 - BACOVA_05285 0.34 +1.0 779,169 - BACOVA_05285 0.34 +0.6 779,172 + BACOVA_05285 0.34 +0.4 779,172 + BACOVA_05285 0.34 -0.0 779,173 - BACOVA_05285 0.34 -2.3 779,190 - BACOVA_05285 0.35 +0.6 779,190 - BACOVA_05285 0.35 -2.0 779,324 + BACOVA_05285 0.45 +0.3 779,405 + BACOVA_05285 0.51 -2.1 779,437 - BACOVA_05285 0.53 +1.1 779,454 - BACOVA_05285 0.54 -1.3 779,454 - BACOVA_05285 0.54 +0.4 779,456 + BACOVA_05285 0.55 -1.8 779,465 + BACOVA_05285 0.55 -0.2 779,468 + BACOVA_05285 0.55 -0.5 779,544 + BACOVA_05285 0.61 +1.3 779,545 - BACOVA_05285 0.61 +1.8 779,546 + BACOVA_05285 0.61 +0.1 779,546 + BACOVA_05285 0.61 +0.5 779,547 - BACOVA_05285 0.61 +0.8 779,547 - BACOVA_05285 0.61 +2.1 779,549 + BACOVA_05285 0.61 -1.6 779,549 + BACOVA_05285 0.61 -0.7 779,550 - BACOVA_05285 0.61 +1.6 779,595 - BACOVA_05285 0.65 -2.1 779,634 + BACOVA_05285 0.67 -0.5 779,634 + BACOVA_05285 0.67 +0.9 779,635 - BACOVA_05285 0.67 +1.2 779,637 + BACOVA_05285 0.68 -0.6 779,688 - BACOVA_05285 0.71 -2.6 779,690 - BACOVA_05285 0.71 -2.0 779,692 + BACOVA_05285 0.72 -1.7 779,692 + BACOVA_05285 0.72 +0.4 779,727 + BACOVA_05285 0.74 -0.1 779,737 - BACOVA_05285 0.75 -1.3 779,808 - BACOVA_05285 0.80 -0.2 779,907 + BACOVA_05285 0.87 -0.2 779,908 - BACOVA_05285 0.87 -1.6 779,950 - +0.8 780,025 - +2.3 780,027 + +1.1 780,028 - +0.7 780,032 + +0.5 780,032 + -1.0 780,033 - +2.9 780,036 - +3.0 780,039 + +0.7 780,045 - -0.5 780,046 + +0.3 780,046 + -1.3 780,047 - -1.7 780,047 - -0.1 780,047 - -1.2 780,058 - -0.7 780,087 - -2.1 780,091 - +3.2 780,097 + +1.6 780,101 + +0.4 780,102 - -1.4 780,103 + +0.5 780,149 + +0.4 780,244 + BACOVA_05286 0.19 -0.6 780,261 + BACOVA_05286 0.22 +0.8 780,363 + BACOVA_05286 0.38 -0.9 780,363 + BACOVA_05286 0.38 -0.3 780,403 + BACOVA_05286 0.44 +1.4 780,495 + BACOVA_05286 0.58 -0.2 780,496 - BACOVA_05286 0.58 -0.5 780,496 - BACOVA_05286 0.58 -1.2 780,499 + BACOVA_05286 0.58 +0.3 780,562 + BACOVA_05286 0.68 +1.3 780,596 + BACOVA_05286 0.73 +0.3 780,596 + BACOVA_05286 0.73 -2.5 780,621 + BACOVA_05286 0.77 -1.8 780,622 - BACOVA_05286 0.77 -0.7 780,622 - BACOVA_05286 0.77 -1.9 780,738 + +0.1 780,739 - +0.8 780,739 - -2.0 780,739 - -1.2 780,740 + +1.4 780,740 + +1.4 780,740 + +0.4 780,741 - +0.6 780,743 - +2.4 780,743 - +0.6 780,743 - -0.1 780,749 + -0.1 780,771 + +0.2 780,783 + +0.4 780,890 + +0.2 781,020 - BACOVA_05287 0.59 +2.2 781,020 - BACOVA_05287 0.59 +0.4 781,082 + -0.7 781,111 - -0.9 781,128 - -0.0 781,139 - -1.2 781,141 - -0.4 781,184 + +0.3 781,184 + +0.6 781,204 - +1.7 781,208 - -0.5 781,208 - +1.3 781,272 + -0.9 781,273 - +0.3 781,306 + +0.9 781,316 - +1.5 781,350 + +0.8 781,351 - +0.7 781,351 - +1.4 781,353 - +0.8 781,367 - +1.2 781,374 - +0.5 781,376 - -0.1 781,421 + -0.1 781,457 - +0.3 781,498 - -0.3 781,610 - BACOVA_05288 0.16 -0.6 781,710 + BACOVA_05288 0.24 +0.1 781,711 - BACOVA_05288 0.24 -0.1 781,711 - BACOVA_05288 0.24 +0.4 781,711 - BACOVA_05288 0.24 -2.7 781,714 + BACOVA_05288 0.25 -0.5 781,715 - BACOVA_05288 0.25 -0.4 781,715 - BACOVA_05288 0.25 -0.7 781,763 - BACOVA_05288 0.28 +0.8 781,764 + BACOVA_05288 0.28 -0.5 781,764 + BACOVA_05288 0.28 +2.4 781,764 + BACOVA_05288 0.28 +0.5 781,765 - BACOVA_05288 0.29 +1.7 781,765 - BACOVA_05288 0.29 +1.0
Or see this region's nucleotide sequence