Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05200 and BACOVA_05201 are separated by 119 nucleotides BACOVA_05201 and BACOVA_05202 are separated by 99 nucleotides BACOVA_05202 and BACOVA_05203 overlap by 8 nucleotides
BACOVA_05200: BACOVA_05200 - CBS domain protein, at 699,459 to 700,715
_05200
BACOVA_05201: BACOVA_05201 - hypothetical protein, at 700,835 to 702,976
_05201
BACOVA_05202: BACOVA_05202 - hypothetical protein, at 703,076 to 703,195
_05202
BACOVA_05203: BACOVA_05203 - tetratricopeptide repeat protein, at 703,188 to 706,541
_05203
Position (kb) 700
701
702
703 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 699.864 kb on + strand, within BACOVA_05200 at 699.865 kb on - strand, within BACOVA_05200 at 699.874 kb on + strand, within BACOVA_05200 at 699.877 kb on - strand, within BACOVA_05200 at 699.881 kb on + strand, within BACOVA_05200 at 699.941 kb on + strand, within BACOVA_05200 at 700.197 kb on + strand, within BACOVA_05200 at 700.198 kb on - strand, within BACOVA_05200 at 700.227 kb on + strand, within BACOVA_05200 at 700.230 kb on - strand, within BACOVA_05200 at 700.320 kb on - strand, within BACOVA_05200 at 700.337 kb on + strand, within BACOVA_05200 at 700.338 kb on - strand, within BACOVA_05200 at 700.386 kb on - strand, within BACOVA_05200 at 700.399 kb on + strand, within BACOVA_05200 at 700.426 kb on + strand, within BACOVA_05200 at 700.436 kb on + strand, within BACOVA_05200 at 700.458 kb on - strand, within BACOVA_05200 at 700.465 kb on - strand, within BACOVA_05200 at 700.465 kb on - strand, within BACOVA_05200 at 700.469 kb on + strand, within BACOVA_05200 at 700.495 kb on - strand, within BACOVA_05200 at 700.569 kb on + strand, within BACOVA_05200 at 700.660 kb on + strand at 700.700 kb on - strand at 700.722 kb on + strand at 700.723 kb on - strand at 700.756 kb on + strand at 700.811 kb on + strand at 701.477 kb on + strand, within BACOVA_05201 at 701.844 kb on - strand, within BACOVA_05201 at 702.507 kb on + strand, within BACOVA_05201 at 702.829 kb on - strand at 702.933 kb on - strand at 702.982 kb on + strand at 702.983 kb on - strand at 702.983 kb on - strand at 702.992 kb on + strand at 702.993 kb on - strand at 702.996 kb on + strand at 702.996 kb on + strand at 703.000 kb on - strand at 703.010 kb on + strand at 703.011 kb on - strand at 703.029 kb on + strand at 703.059 kb on + strand at 703.139 kb on + strand, within BACOVA_05202 at 703.140 kb on - strand, within BACOVA_05202 at 703.167 kb on + strand, within BACOVA_05202 at 703.182 kb on + strand, within BACOVA_05202 at 703.183 kb on - strand, within BACOVA_05202 at 703.183 kb on - strand, within BACOVA_05202 at 703.185 kb on - strand at 703.187 kb on - strand at 703.194 kb on - strand at 703.295 kb on - strand at 703.295 kb on - strand at 703.434 kb on - strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.458 kb on - strand at 703.458 kb on - strand at 703.492 kb on - strand at 703.502 kb on - strand at 703.502 kb on - strand at 703.502 kb on - strand at 703.530 kb on + strand, within BACOVA_05203 at 703.541 kb on - strand, within BACOVA_05203 at 703.598 kb on - strand, within BACOVA_05203 at 703.618 kb on + strand, within BACOVA_05203 at 703.627 kb on - strand, within BACOVA_05203 at 703.632 kb on + strand, within BACOVA_05203 at 703.636 kb on + strand, within BACOVA_05203 at 703.743 kb on + strand, within BACOVA_05203 at 703.767 kb on - strand, within BACOVA_05203 at 703.819 kb on + strand, within BACOVA_05203 at 703.835 kb on + strand, within BACOVA_05203 at 703.895 kb on - strand, within BACOVA_05203
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 699,864 + BACOVA_05200 0.32 -0.0 699,865 - BACOVA_05200 0.32 -1.0 699,874 + BACOVA_05200 0.33 +0.8 699,877 - BACOVA_05200 0.33 -0.7 699,881 + BACOVA_05200 0.34 -1.3 699,941 + BACOVA_05200 0.38 -0.5 700,197 + BACOVA_05200 0.59 -1.2 700,198 - BACOVA_05200 0.59 +1.5 700,227 + BACOVA_05200 0.61 -0.0 700,230 - BACOVA_05200 0.61 -1.2 700,320 - BACOVA_05200 0.68 -0.8 700,337 + BACOVA_05200 0.70 +1.5 700,338 - BACOVA_05200 0.70 +1.0 700,386 - BACOVA_05200 0.74 +1.9 700,399 + BACOVA_05200 0.75 -1.4 700,426 + BACOVA_05200 0.77 -1.2 700,436 + BACOVA_05200 0.78 -0.3 700,458 - BACOVA_05200 0.79 -0.3 700,465 - BACOVA_05200 0.80 +0.1 700,465 - BACOVA_05200 0.80 -1.8 700,469 + BACOVA_05200 0.80 -0.9 700,495 - BACOVA_05200 0.82 -0.7 700,569 + BACOVA_05200 0.88 +1.9 700,660 + +1.3 700,700 - +0.5 700,722 + -0.3 700,723 - -1.3 700,756 + -1.4 700,811 + +0.7 701,477 + BACOVA_05201 0.30 -0.7 701,844 - BACOVA_05201 0.47 -0.0 702,507 + BACOVA_05201 0.78 -0.5 702,829 - -0.5 702,933 - -1.9 702,982 + +3.0 702,983 - -3.6 702,983 - -1.0 702,992 + +1.0 702,993 - -1.3 702,996 + +1.5 702,996 + -2.9 703,000 - -1.9 703,010 + -0.9 703,011 - +1.6 703,029 + +0.3 703,059 + +0.6 703,139 + BACOVA_05202 0.53 -0.4 703,140 - BACOVA_05202 0.53 -1.4 703,167 + BACOVA_05202 0.76 -1.5 703,182 + BACOVA_05202 0.88 +0.1 703,183 - BACOVA_05202 0.89 -0.5 703,183 - BACOVA_05202 0.89 -1.4 703,185 - -0.7 703,187 - +1.8 703,194 - +0.2 703,295 - -1.7 703,295 - -1.6 703,434 - -0.7 703,457 + +0.4 703,457 + -1.7 703,457 + +2.3 703,457 + +4.2 703,457 + +1.1 703,458 - +1.1 703,458 - -1.6 703,492 - -2.6 703,502 - +0.8 703,502 - +1.5 703,502 - -1.0 703,530 + BACOVA_05203 0.10 -0.3 703,541 - BACOVA_05203 0.11 +0.4 703,598 - BACOVA_05203 0.12 -0.7 703,618 + BACOVA_05203 0.13 -0.1 703,627 - BACOVA_05203 0.13 -0.0 703,632 + BACOVA_05203 0.13 -2.5 703,636 + BACOVA_05203 0.13 +2.1 703,743 + BACOVA_05203 0.17 -0.0 703,767 - BACOVA_05203 0.17 -0.6 703,819 + BACOVA_05203 0.19 -0.7 703,835 + BACOVA_05203 0.19 -0.4 703,895 - BACOVA_05203 0.21 -0.1
Or see this region's nucleotide sequence