Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04519

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04518 and BACOVA_04519 are separated by 3 nucleotidesBACOVA_04519 and BACOVA_04520 overlap by 13 nucleotides BACOVA_04518: BACOVA_04518 - histidine kinase, at 457,918 to 459,132 _04518 BACOVA_04519: BACOVA_04519 - hypothetical protein, at 459,136 to 459,243 _04519 BACOVA_04520: BACOVA_04520 - hypothetical protein, at 459,231 to 461,225 _04520 Position (kb) 459 460Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 458.164 kb on - strand, within BACOVA_04518at 458.244 kb on + strand, within BACOVA_04518at 458.351 kb on + strand, within BACOVA_04518at 458.352 kb on - strand, within BACOVA_04518at 458.424 kb on + strand, within BACOVA_04518at 458.425 kb on - strand, within BACOVA_04518at 458.425 kb on - strand, within BACOVA_04518at 458.425 kb on - strand, within BACOVA_04518at 458.428 kb on - strand, within BACOVA_04518at 458.436 kb on + strand, within BACOVA_04518at 458.436 kb on + strand, within BACOVA_04518at 458.457 kb on + strand, within BACOVA_04518at 458.573 kb on - strand, within BACOVA_04518at 458.601 kb on + strand, within BACOVA_04518at 458.754 kb on + strand, within BACOVA_04518at 458.755 kb on - strand, within BACOVA_04518at 458.785 kb on - strand, within BACOVA_04518at 458.867 kb on - strand, within BACOVA_04518at 458.889 kb on + strand, within BACOVA_04518at 458.889 kb on + strand, within BACOVA_04518at 458.892 kb on - strand, within BACOVA_04518at 458.936 kb on + strand, within BACOVA_04518at 458.941 kb on - strand, within BACOVA_04518at 459.001 kb on - strand, within BACOVA_04518at 459.042 kb on - strandat 459.049 kb on + strandat 459.082 kb on - strandat 459.090 kb on - strandat 459.191 kb on - strand, within BACOVA_04519at 459.330 kb on - strandat 459.374 kb on - strandat 459.425 kb on + strandat 459.425 kb on + strandat 459.425 kb on + strandat 459.426 kb on - strandat 459.426 kb on - strandat 459.426 kb on - strandat 459.426 kb on - strandat 459.427 kb on + strandat 459.428 kb on - strandat 459.428 kb on - strandat 459.500 kb on - strand, within BACOVA_04520at 459.507 kb on + strand, within BACOVA_04520at 459.540 kb on + strand, within BACOVA_04520at 459.551 kb on + strand, within BACOVA_04520at 459.552 kb on - strand, within BACOVA_04520at 459.568 kb on + strand, within BACOVA_04520at 459.569 kb on - strand, within BACOVA_04520at 459.588 kb on - strand, within BACOVA_04520at 459.591 kb on + strand, within BACOVA_04520at 459.591 kb on + strand, within BACOVA_04520at 459.591 kb on + strand, within BACOVA_04520at 459.591 kb on + strand, within BACOVA_04520at 459.592 kb on - strand, within BACOVA_04520at 459.592 kb on - strand, within BACOVA_04520at 459.602 kb on + strand, within BACOVA_04520at 459.608 kb on + strand, within BACOVA_04520at 459.608 kb on + strand, within BACOVA_04520at 459.659 kb on + strand, within BACOVA_04520at 459.695 kb on + strand, within BACOVA_04520at 459.696 kb on - strand, within BACOVA_04520at 459.771 kb on - strand, within BACOVA_04520at 459.772 kb on + strand, within BACOVA_04520at 459.773 kb on - strand, within BACOVA_04520at 459.779 kb on - strand, within BACOVA_04520at 459.779 kb on - strand, within BACOVA_04520at 459.783 kb on - strand, within BACOVA_04520at 459.783 kb on - strand, within BACOVA_04520at 459.795 kb on - strand, within BACOVA_04520at 459.821 kb on + strand, within BACOVA_04520at 459.822 kb on - strand, within BACOVA_04520at 459.833 kb on - strand, within BACOVA_04520at 459.994 kb on + strand, within BACOVA_04520at 459.996 kb on + strand, within BACOVA_04520at 459.997 kb on - strand, within BACOVA_04520at 460.013 kb on + strand, within BACOVA_04520at 460.017 kb on + strand, within BACOVA_04520at 460.089 kb on - strand, within BACOVA_04520at 460.139 kb on + strand, within BACOVA_04520at 460.139 kb on + strand, within BACOVA_04520at 460.139 kb on + strand, within BACOVA_04520at 460.139 kb on + strand, within BACOVA_04520at 460.158 kb on + strand, within BACOVA_04520at 460.167 kb on - strand, within BACOVA_04520at 460.229 kb on + strand, within BACOVA_04520

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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458,164 - BACOVA_04518 0.20 -0.7
458,244 + BACOVA_04518 0.27 -0.5
458,351 + BACOVA_04518 0.36 -2.5
458,352 - BACOVA_04518 0.36 -2.8
458,424 + BACOVA_04518 0.42 +0.7
458,425 - BACOVA_04518 0.42 +0.0
458,425 - BACOVA_04518 0.42 -1.9
458,425 - BACOVA_04518 0.42 -1.2
458,428 - BACOVA_04518 0.42 +0.8
458,436 + BACOVA_04518 0.43 -0.7
458,436 + BACOVA_04518 0.43 -1.3
458,457 + BACOVA_04518 0.44 -0.7
458,573 - BACOVA_04518 0.54 -0.9
458,601 + BACOVA_04518 0.56 -2.8
458,754 + BACOVA_04518 0.69 +0.3
458,755 - BACOVA_04518 0.69 +0.8
458,785 - BACOVA_04518 0.71 +0.3
458,867 - BACOVA_04518 0.78 +0.1
458,889 + BACOVA_04518 0.80 -2.0
458,889 + BACOVA_04518 0.80 +1.2
458,892 - BACOVA_04518 0.80 -0.1
458,936 + BACOVA_04518 0.84 +1.1
458,941 - BACOVA_04518 0.84 +0.5
459,001 - BACOVA_04518 0.89 -1.5
459,042 - +0.8
459,049 + +1.6
459,082 - +0.1
459,090 - -0.2
459,191 - BACOVA_04519 0.51 +1.1
459,330 - +0.7
459,374 - +1.2
459,425 + +1.5
459,425 + -0.1
459,425 + -1.0
459,426 - -0.4
459,426 - -0.8
459,426 - -0.5
459,426 - +0.2
459,427 + -0.1
459,428 - -0.5
459,428 - -2.4
459,500 - BACOVA_04520 0.13 -3.1
459,507 + BACOVA_04520 0.14 -1.6
459,540 + BACOVA_04520 0.15 -2.7
459,551 + BACOVA_04520 0.16 +0.6
459,552 - BACOVA_04520 0.16 +0.7
459,568 + BACOVA_04520 0.17 -0.8
459,569 - BACOVA_04520 0.17 -0.1
459,588 - BACOVA_04520 0.18 +0.9
459,591 + BACOVA_04520 0.18 -0.8
459,591 + BACOVA_04520 0.18 +0.1
459,591 + BACOVA_04520 0.18 +2.1
459,591 + BACOVA_04520 0.18 +1.3
459,592 - BACOVA_04520 0.18 -0.7
459,592 - BACOVA_04520 0.18 -0.0
459,602 + BACOVA_04520 0.19 +0.4
459,608 + BACOVA_04520 0.19 -0.7
459,608 + BACOVA_04520 0.19 -2.3
459,659 + BACOVA_04520 0.21 -3.1
459,695 + BACOVA_04520 0.23 -3.6
459,696 - BACOVA_04520 0.23 -0.4
459,771 - BACOVA_04520 0.27 -0.4
459,772 + BACOVA_04520 0.27 +0.7
459,773 - BACOVA_04520 0.27 +0.8
459,779 - BACOVA_04520 0.27 -2.1
459,779 - BACOVA_04520 0.27 -0.3
459,783 - BACOVA_04520 0.28 -2.2
459,783 - BACOVA_04520 0.28 +0.7
459,795 - BACOVA_04520 0.28 -3.8
459,821 + BACOVA_04520 0.30 +0.7
459,822 - BACOVA_04520 0.30 +1.1
459,833 - BACOVA_04520 0.30 -1.3
459,994 + BACOVA_04520 0.38 -0.3
459,996 + BACOVA_04520 0.38 +0.5
459,997 - BACOVA_04520 0.38 -0.6
460,013 + BACOVA_04520 0.39 -0.9
460,017 + BACOVA_04520 0.39 -0.2
460,089 - BACOVA_04520 0.43 -0.7
460,139 + BACOVA_04520 0.46 -0.3
460,139 + BACOVA_04520 0.46 +0.6
460,139 + BACOVA_04520 0.46 -2.3
460,139 + BACOVA_04520 0.46 +2.0
460,158 + BACOVA_04520 0.46 +0.5
460,167 - BACOVA_04520 0.47 -0.4
460,229 + BACOVA_04520 0.50 +0.6

Or see this region's nucleotide sequence