Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04515 and BACOVA_04516 are separated by 134 nucleotides BACOVA_04516 and BACOVA_04517 are separated by 4 nucleotides BACOVA_04517 and BACOVA_04518 overlap by 4 nucleotides
BACOVA_04515: BACOVA_04515 - hypothetical protein, at 454,664 to 455,869
_04515
BACOVA_04516: BACOVA_04516 - peptidase C1-like family, at 456,004 to 457,188
_04516
BACOVA_04517: BACOVA_04517 - response regulator receiver domain protein, at 457,193 to 457,921
_04517
BACOVA_04518: BACOVA_04518 - histidine kinase, at 457,918 to 459,132
_04518
Position (kb) 456
457
458 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 455.090 kb on + strand, within BACOVA_04515 at 455.095 kb on + strand, within BACOVA_04515 at 455.096 kb on - strand, within BACOVA_04515 at 455.098 kb on + strand, within BACOVA_04515 at 455.099 kb on - strand, within BACOVA_04515 at 455.134 kb on + strand, within BACOVA_04515 at 455.198 kb on + strand, within BACOVA_04515 at 455.198 kb on + strand, within BACOVA_04515 at 455.199 kb on - strand, within BACOVA_04515 at 455.269 kb on + strand, within BACOVA_04515 at 455.292 kb on + strand, within BACOVA_04515 at 455.297 kb on + strand, within BACOVA_04515 at 455.297 kb on + strand, within BACOVA_04515 at 455.309 kb on - strand, within BACOVA_04515 at 455.309 kb on - strand, within BACOVA_04515 at 455.310 kb on + strand, within BACOVA_04515 at 455.311 kb on - strand, within BACOVA_04515 at 455.343 kb on + strand, within BACOVA_04515 at 455.343 kb on + strand, within BACOVA_04515 at 455.343 kb on + strand, within BACOVA_04515 at 455.344 kb on - strand, within BACOVA_04515 at 455.344 kb on - strand, within BACOVA_04515 at 455.345 kb on + strand, within BACOVA_04515 at 455.374 kb on + strand, within BACOVA_04515 at 455.377 kb on + strand, within BACOVA_04515 at 455.378 kb on - strand, within BACOVA_04515 at 455.382 kb on + strand, within BACOVA_04515 at 455.383 kb on - strand, within BACOVA_04515 at 455.384 kb on + strand, within BACOVA_04515 at 455.385 kb on - strand, within BACOVA_04515 at 455.385 kb on - strand, within BACOVA_04515 at 455.413 kb on + strand, within BACOVA_04515 at 455.477 kb on + strand, within BACOVA_04515 at 455.487 kb on + strand, within BACOVA_04515 at 455.488 kb on - strand, within BACOVA_04515 at 455.597 kb on + strand, within BACOVA_04515 at 455.598 kb on - strand, within BACOVA_04515 at 455.599 kb on + strand, within BACOVA_04515 at 455.616 kb on - strand, within BACOVA_04515 at 455.621 kb on - strand, within BACOVA_04515 at 455.651 kb on - strand, within BACOVA_04515 at 455.663 kb on + strand, within BACOVA_04515 at 455.663 kb on + strand, within BACOVA_04515 at 455.663 kb on + strand, within BACOVA_04515 at 455.699 kb on + strand, within BACOVA_04515 at 455.764 kb on + strand at 455.792 kb on - strand at 455.893 kb on - strand at 455.893 kb on - strand at 455.897 kb on + strand at 455.942 kb on + strand at 455.963 kb on + strand at 456.123 kb on + strand, within BACOVA_04516 at 456.204 kb on + strand, within BACOVA_04516 at 456.275 kb on + strand, within BACOVA_04516 at 456.275 kb on + strand, within BACOVA_04516 at 456.276 kb on - strand, within BACOVA_04516 at 456.276 kb on - strand, within BACOVA_04516 at 456.276 kb on - strand, within BACOVA_04516 at 456.276 kb on - strand, within BACOVA_04516 at 456.326 kb on + strand, within BACOVA_04516 at 456.327 kb on - strand, within BACOVA_04516 at 456.327 kb on - strand, within BACOVA_04516 at 456.331 kb on + strand, within BACOVA_04516 at 456.332 kb on - strand, within BACOVA_04516 at 456.332 kb on - strand, within BACOVA_04516 at 456.346 kb on + strand, within BACOVA_04516 at 456.347 kb on - strand, within BACOVA_04516 at 456.378 kb on + strand, within BACOVA_04516 at 456.379 kb on - strand, within BACOVA_04516 at 456.381 kb on + strand, within BACOVA_04516 at 456.381 kb on + strand, within BACOVA_04516 at 456.381 kb on + strand, within BACOVA_04516 at 456.381 kb on + strand, within BACOVA_04516 at 456.382 kb on - strand, within BACOVA_04516 at 456.385 kb on + strand, within BACOVA_04516 at 456.386 kb on - strand, within BACOVA_04516 at 456.386 kb on - strand, within BACOVA_04516 at 456.409 kb on - strand, within BACOVA_04516 at 456.465 kb on - strand, within BACOVA_04516 at 456.498 kb on - strand, within BACOVA_04516 at 456.498 kb on - strand, within BACOVA_04516 at 456.508 kb on + strand, within BACOVA_04516 at 456.517 kb on + strand, within BACOVA_04516 at 456.518 kb on - strand, within BACOVA_04516 at 456.518 kb on - strand, within BACOVA_04516 at 456.548 kb on - strand, within BACOVA_04516 at 456.563 kb on - strand, within BACOVA_04516 at 456.603 kb on + strand, within BACOVA_04516 at 456.610 kb on + strand, within BACOVA_04516 at 456.610 kb on + strand, within BACOVA_04516 at 456.611 kb on - strand, within BACOVA_04516 at 456.615 kb on - strand, within BACOVA_04516 at 456.630 kb on + strand, within BACOVA_04516 at 456.630 kb on + strand, within BACOVA_04516 at 456.630 kb on + strand, within BACOVA_04516 at 456.630 kb on + strand, within BACOVA_04516 at 456.631 kb on - strand, within BACOVA_04516 at 456.646 kb on + strand, within BACOVA_04516 at 456.647 kb on - strand, within BACOVA_04516 at 456.675 kb on + strand, within BACOVA_04516 at 456.685 kb on - strand, within BACOVA_04516 at 456.698 kb on - strand, within BACOVA_04516 at 456.754 kb on + strand, within BACOVA_04516 at 456.756 kb on + strand, within BACOVA_04516 at 456.905 kb on + strand, within BACOVA_04516 at 456.936 kb on + strand, within BACOVA_04516 at 456.998 kb on + strand, within BACOVA_04516 at 457.003 kb on + strand, within BACOVA_04516 at 457.003 kb on + strand, within BACOVA_04516 at 457.004 kb on - strand, within BACOVA_04516 at 457.009 kb on - strand, within BACOVA_04516 at 457.036 kb on + strand, within BACOVA_04516 at 457.036 kb on + strand, within BACOVA_04516 at 457.037 kb on - strand, within BACOVA_04516 at 457.037 kb on - strand, within BACOVA_04516 at 457.063 kb on - strand, within BACOVA_04516 at 457.075 kb on + strand at 457.076 kb on - strand at 457.084 kb on - strand at 457.084 kb on - strand at 457.128 kb on + strand at 457.129 kb on - strand at 457.190 kb on + strand at 457.194 kb on + strand at 457.259 kb on - strand at 457.261 kb on - strand at 457.264 kb on + strand at 457.265 kb on - strand at 457.265 kb on - strand at 457.270 kb on + strand, within BACOVA_04517 at 457.271 kb on - strand, within BACOVA_04517 at 457.327 kb on - strand, within BACOVA_04517 at 457.327 kb on - strand, within BACOVA_04517 at 457.327 kb on - strand, within BACOVA_04517 at 457.398 kb on - strand, within BACOVA_04517 at 457.426 kb on + strand, within BACOVA_04517 at 457.453 kb on + strand, within BACOVA_04517 at 457.454 kb on - strand, within BACOVA_04517 at 457.455 kb on + strand, within BACOVA_04517 at 457.492 kb on - strand, within BACOVA_04517 at 457.607 kb on + strand, within BACOVA_04517 at 457.643 kb on + strand, within BACOVA_04517 at 457.644 kb on - strand, within BACOVA_04517 at 457.728 kb on - strand, within BACOVA_04517 at 457.728 kb on - strand, within BACOVA_04517 at 457.759 kb on + strand, within BACOVA_04517 at 457.759 kb on + strand, within BACOVA_04517 at 457.759 kb on + strand, within BACOVA_04517 at 457.760 kb on - strand, within BACOVA_04517 at 457.760 kb on - strand, within BACOVA_04517 at 457.760 kb on - strand, within BACOVA_04517 at 457.760 kb on - strand, within BACOVA_04517 at 457.763 kb on - strand, within BACOVA_04517 at 457.799 kb on + strand, within BACOVA_04517 at 457.799 kb on + strand, within BACOVA_04517 at 457.799 kb on + strand, within BACOVA_04517 at 457.835 kb on + strand, within BACOVA_04517 at 457.835 kb on + strand, within BACOVA_04517 at 457.835 kb on + strand, within BACOVA_04517 at 457.864 kb on + strand at 457.864 kb on + strand at 457.865 kb on - strand at 457.865 kb on - strand at 457.867 kb on - strand at 457.867 kb on - strand at 457.904 kb on + strand at 457.905 kb on - strand at 457.905 kb on - strand at 457.905 kb on - strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.911 kb on - strand at 457.913 kb on - strand at 457.913 kb on - strand at 457.925 kb on - strand at 457.928 kb on - strand at 457.935 kb on + strand at 457.942 kb on + strand at 457.942 kb on + strand at 457.957 kb on - strand at 457.986 kb on - strand at 457.986 kb on - strand at 458.068 kb on - strand, within BACOVA_04518 at 458.068 kb on - strand, within BACOVA_04518 at 458.130 kb on + strand, within BACOVA_04518 at 458.131 kb on - strand, within BACOVA_04518 at 458.164 kb on - strand, within BACOVA_04518
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 455,090 + BACOVA_04515 0.35 -0.2 455,095 + BACOVA_04515 0.36 +1.5 455,096 - BACOVA_04515 0.36 -0.4 455,098 + BACOVA_04515 0.36 +1.2 455,099 - BACOVA_04515 0.36 -3.0 455,134 + BACOVA_04515 0.39 -0.4 455,198 + BACOVA_04515 0.44 -1.0 455,198 + BACOVA_04515 0.44 -0.1 455,199 - BACOVA_04515 0.44 +0.7 455,269 + BACOVA_04515 0.50 -1.5 455,292 + BACOVA_04515 0.52 -0.0 455,297 + BACOVA_04515 0.52 -2.0 455,297 + BACOVA_04515 0.52 +1.7 455,309 - BACOVA_04515 0.53 -0.6 455,309 - BACOVA_04515 0.53 -0.0 455,310 + BACOVA_04515 0.54 +1.8 455,311 - BACOVA_04515 0.54 +0.3 455,343 + BACOVA_04515 0.56 -3.2 455,343 + BACOVA_04515 0.56 +1.5 455,343 + BACOVA_04515 0.56 -2.6 455,344 - BACOVA_04515 0.56 -1.9 455,344 - BACOVA_04515 0.56 -1.3 455,345 + BACOVA_04515 0.56 -0.3 455,374 + BACOVA_04515 0.59 -2.1 455,377 + BACOVA_04515 0.59 +0.9 455,378 - BACOVA_04515 0.59 +0.7 455,382 + BACOVA_04515 0.60 -1.5 455,383 - BACOVA_04515 0.60 +0.6 455,384 + BACOVA_04515 0.60 +1.3 455,385 - BACOVA_04515 0.60 -3.4 455,385 - BACOVA_04515 0.60 -0.2 455,413 + BACOVA_04515 0.62 +0.6 455,477 + BACOVA_04515 0.67 -3.0 455,487 + BACOVA_04515 0.68 -0.0 455,488 - BACOVA_04515 0.68 +0.6 455,597 + BACOVA_04515 0.77 -2.9 455,598 - BACOVA_04515 0.77 +0.9 455,599 + BACOVA_04515 0.78 -0.6 455,616 - BACOVA_04515 0.79 +2.5 455,621 - BACOVA_04515 0.79 +0.4 455,651 - BACOVA_04515 0.82 -0.6 455,663 + BACOVA_04515 0.83 +2.7 455,663 + BACOVA_04515 0.83 -2.3 455,663 + BACOVA_04515 0.83 -0.6 455,699 + BACOVA_04515 0.86 -1.5 455,764 + +0.8 455,792 - +0.3 455,893 - -0.3 455,893 - -1.8 455,897 + -0.5 455,942 + -0.9 455,963 + -1.3 456,123 + BACOVA_04516 0.10 -1.4 456,204 + BACOVA_04516 0.17 +1.5 456,275 + BACOVA_04516 0.23 +0.6 456,275 + BACOVA_04516 0.23 -4.4 456,276 - BACOVA_04516 0.23 +1.6 456,276 - BACOVA_04516 0.23 +1.6 456,276 - BACOVA_04516 0.23 -0.0 456,276 - BACOVA_04516 0.23 -3.4 456,326 + BACOVA_04516 0.27 +0.6 456,327 - BACOVA_04516 0.27 +1.1 456,327 - BACOVA_04516 0.27 -1.4 456,331 + BACOVA_04516 0.28 -0.2 456,332 - BACOVA_04516 0.28 -0.5 456,332 - BACOVA_04516 0.28 -0.7 456,346 + BACOVA_04516 0.29 +1.6 456,347 - BACOVA_04516 0.29 +0.5 456,378 + BACOVA_04516 0.32 -0.0 456,379 - BACOVA_04516 0.32 +0.1 456,381 + BACOVA_04516 0.32 +1.8 456,381 + BACOVA_04516 0.32 -1.1 456,381 + BACOVA_04516 0.32 +1.1 456,381 + BACOVA_04516 0.32 -0.7 456,382 - BACOVA_04516 0.32 +0.4 456,385 + BACOVA_04516 0.32 -2.4 456,386 - BACOVA_04516 0.32 -2.4 456,386 - BACOVA_04516 0.32 -0.3 456,409 - BACOVA_04516 0.34 -1.3 456,465 - BACOVA_04516 0.39 -0.1 456,498 - BACOVA_04516 0.42 +1.2 456,498 - BACOVA_04516 0.42 -1.5 456,508 + BACOVA_04516 0.43 -0.8 456,517 + BACOVA_04516 0.43 -0.0 456,518 - BACOVA_04516 0.43 -2.3 456,518 - BACOVA_04516 0.43 -0.2 456,548 - BACOVA_04516 0.46 +0.7 456,563 - BACOVA_04516 0.47 +0.3 456,603 + BACOVA_04516 0.51 -1.5 456,610 + BACOVA_04516 0.51 +0.3 456,610 + BACOVA_04516 0.51 +0.5 456,611 - BACOVA_04516 0.51 -3.3 456,615 - BACOVA_04516 0.52 -0.4 456,630 + BACOVA_04516 0.53 -2.0 456,630 + BACOVA_04516 0.53 -0.8 456,630 + BACOVA_04516 0.53 -3.1 456,630 + BACOVA_04516 0.53 -4.2 456,631 - BACOVA_04516 0.53 -0.6 456,646 + BACOVA_04516 0.54 +1.3 456,647 - BACOVA_04516 0.54 -1.4 456,675 + BACOVA_04516 0.57 -2.3 456,685 - BACOVA_04516 0.57 -2.1 456,698 - BACOVA_04516 0.59 -1.1 456,754 + BACOVA_04516 0.63 -1.5 456,756 + BACOVA_04516 0.63 -0.0 456,905 + BACOVA_04516 0.76 -0.9 456,936 + BACOVA_04516 0.79 +0.9 456,998 + BACOVA_04516 0.84 -0.1 457,003 + BACOVA_04516 0.84 +0.2 457,003 + BACOVA_04516 0.84 +0.2 457,004 - BACOVA_04516 0.84 -0.3 457,009 - BACOVA_04516 0.85 +0.1 457,036 + BACOVA_04516 0.87 -1.8 457,036 + BACOVA_04516 0.87 -2.0 457,037 - BACOVA_04516 0.87 +1.4 457,037 - BACOVA_04516 0.87 -1.6 457,063 - BACOVA_04516 0.89 -0.5 457,075 + -0.5 457,076 - +0.0 457,084 - -2.2 457,084 - -2.1 457,128 + +0.5 457,129 - +0.6 457,190 + -0.1 457,194 + +1.3 457,259 - -1.8 457,261 - +1.2 457,264 + -0.2 457,265 - -0.9 457,265 - +0.3 457,270 + BACOVA_04517 0.11 -0.6 457,271 - BACOVA_04517 0.11 +0.5 457,327 - BACOVA_04517 0.18 -3.9 457,327 - BACOVA_04517 0.18 +0.6 457,327 - BACOVA_04517 0.18 -1.4 457,398 - BACOVA_04517 0.28 +0.7 457,426 + BACOVA_04517 0.32 +0.2 457,453 + BACOVA_04517 0.36 +0.7 457,454 - BACOVA_04517 0.36 -2.2 457,455 + BACOVA_04517 0.36 +2.3 457,492 - BACOVA_04517 0.41 +0.4 457,607 + BACOVA_04517 0.57 -0.7 457,643 + BACOVA_04517 0.62 +1.1 457,644 - BACOVA_04517 0.62 -0.9 457,728 - BACOVA_04517 0.73 +0.1 457,728 - BACOVA_04517 0.73 +2.2 457,759 + BACOVA_04517 0.78 +2.5 457,759 + BACOVA_04517 0.78 +1.2 457,759 + BACOVA_04517 0.78 +2.0 457,760 - BACOVA_04517 0.78 -0.4 457,760 - BACOVA_04517 0.78 -1.5 457,760 - BACOVA_04517 0.78 +3.5 457,760 - BACOVA_04517 0.78 -0.2 457,763 - BACOVA_04517 0.78 +0.6 457,799 + BACOVA_04517 0.83 +0.3 457,799 + BACOVA_04517 0.83 -1.1 457,799 + BACOVA_04517 0.83 -1.2 457,835 + BACOVA_04517 0.88 +0.9 457,835 + BACOVA_04517 0.88 +1.4 457,835 + BACOVA_04517 0.88 +0.6 457,864 + -3.3 457,864 + +0.9 457,865 - -0.5 457,865 - -3.5 457,867 - -3.6 457,867 - -0.9 457,904 + -1.0 457,905 - -0.8 457,905 - +1.4 457,905 - +0.2 457,910 + -0.5 457,910 + -0.7 457,911 - +3.0 457,913 - -1.2 457,913 - +1.0 457,925 - +0.6 457,928 - -2.6 457,935 + -3.4 457,942 + -3.0 457,942 + -0.4 457,957 - -2.0 457,986 - -1.4 457,986 - -0.7 458,068 - BACOVA_04518 0.12 +0.6 458,068 - BACOVA_04518 0.12 -0.2 458,130 + BACOVA_04518 0.17 +1.6 458,131 - BACOVA_04518 0.18 +1.7 458,164 - BACOVA_04518 0.20 -0.7
Or see this region's nucleotide sequence