Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04514 and BACOVA_04515 overlap by 4 nucleotides BACOVA_04515 and BACOVA_04516 are separated by 134 nucleotides
BACOVA_04514: BACOVA_04514 - hypothetical protein, at 453,342 to 454,667
_04514
BACOVA_04515: BACOVA_04515 - hypothetical protein, at 454,664 to 455,869
_04515
BACOVA_04516: BACOVA_04516 - peptidase C1-like family, at 456,004 to 457,188
_04516
Position (kb) 454
455
456 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 453.675 kb on + strand, within BACOVA_04514 at 453.676 kb on - strand, within BACOVA_04514 at 453.692 kb on - strand, within BACOVA_04514 at 453.746 kb on + strand, within BACOVA_04514 at 453.757 kb on + strand, within BACOVA_04514 at 453.757 kb on + strand, within BACOVA_04514 at 453.757 kb on + strand, within BACOVA_04514 at 453.758 kb on - strand, within BACOVA_04514 at 453.758 kb on - strand, within BACOVA_04514 at 453.758 kb on - strand, within BACOVA_04514 at 453.760 kb on - strand, within BACOVA_04514 at 453.767 kb on + strand, within BACOVA_04514 at 453.771 kb on - strand, within BACOVA_04514 at 453.781 kb on - strand, within BACOVA_04514 at 453.939 kb on + strand, within BACOVA_04514 at 453.983 kb on + strand, within BACOVA_04514 at 453.984 kb on - strand, within BACOVA_04514 at 454.029 kb on + strand, within BACOVA_04514 at 454.167 kb on + strand, within BACOVA_04514 at 454.217 kb on + strand, within BACOVA_04514 at 454.217 kb on + strand, within BACOVA_04514 at 454.217 kb on + strand, within BACOVA_04514 at 454.217 kb on + strand, within BACOVA_04514 at 454.218 kb on - strand, within BACOVA_04514 at 454.218 kb on - strand, within BACOVA_04514 at 454.218 kb on - strand, within BACOVA_04514 at 454.221 kb on + strand, within BACOVA_04514 at 454.221 kb on + strand, within BACOVA_04514 at 454.247 kb on - strand, within BACOVA_04514 at 454.297 kb on + strand, within BACOVA_04514 at 454.298 kb on - strand, within BACOVA_04514 at 454.303 kb on + strand, within BACOVA_04514 at 454.303 kb on + strand, within BACOVA_04514 at 454.304 kb on - strand, within BACOVA_04514 at 454.304 kb on - strand, within BACOVA_04514 at 454.304 kb on - strand, within BACOVA_04514 at 454.304 kb on - strand, within BACOVA_04514 at 454.324 kb on - strand, within BACOVA_04514 at 454.362 kb on + strand, within BACOVA_04514 at 454.362 kb on + strand, within BACOVA_04514 at 454.424 kb on - strand, within BACOVA_04514 at 454.459 kb on - strand, within BACOVA_04514 at 454.471 kb on - strand, within BACOVA_04514 at 454.547 kb on - strand at 454.547 kb on - strand at 454.569 kb on + strand at 454.637 kb on + strand at 454.761 kb on + strand at 454.761 kb on + strand at 454.774 kb on + strand at 454.793 kb on + strand, within BACOVA_04515 at 454.843 kb on + strand, within BACOVA_04515 at 454.979 kb on + strand, within BACOVA_04515 at 454.980 kb on + strand, within BACOVA_04515 at 454.980 kb on + strand, within BACOVA_04515 at 454.999 kb on + strand, within BACOVA_04515 at 455.090 kb on + strand, within BACOVA_04515 at 455.095 kb on + strand, within BACOVA_04515 at 455.096 kb on - strand, within BACOVA_04515 at 455.098 kb on + strand, within BACOVA_04515 at 455.099 kb on - strand, within BACOVA_04515 at 455.134 kb on + strand, within BACOVA_04515 at 455.198 kb on + strand, within BACOVA_04515 at 455.198 kb on + strand, within BACOVA_04515 at 455.199 kb on - strand, within BACOVA_04515 at 455.269 kb on + strand, within BACOVA_04515 at 455.292 kb on + strand, within BACOVA_04515 at 455.297 kb on + strand, within BACOVA_04515 at 455.297 kb on + strand, within BACOVA_04515 at 455.309 kb on - strand, within BACOVA_04515 at 455.309 kb on - strand, within BACOVA_04515 at 455.310 kb on + strand, within BACOVA_04515 at 455.311 kb on - strand, within BACOVA_04515 at 455.343 kb on + strand, within BACOVA_04515 at 455.343 kb on + strand, within BACOVA_04515 at 455.343 kb on + strand, within BACOVA_04515 at 455.344 kb on - strand, within BACOVA_04515 at 455.344 kb on - strand, within BACOVA_04515 at 455.345 kb on + strand, within BACOVA_04515 at 455.374 kb on + strand, within BACOVA_04515 at 455.377 kb on + strand, within BACOVA_04515 at 455.378 kb on - strand, within BACOVA_04515 at 455.382 kb on + strand, within BACOVA_04515 at 455.383 kb on - strand, within BACOVA_04515 at 455.384 kb on + strand, within BACOVA_04515 at 455.385 kb on - strand, within BACOVA_04515 at 455.385 kb on - strand, within BACOVA_04515 at 455.413 kb on + strand, within BACOVA_04515 at 455.477 kb on + strand, within BACOVA_04515 at 455.487 kb on + strand, within BACOVA_04515 at 455.488 kb on - strand, within BACOVA_04515 at 455.597 kb on + strand, within BACOVA_04515 at 455.598 kb on - strand, within BACOVA_04515 at 455.599 kb on + strand, within BACOVA_04515 at 455.616 kb on - strand, within BACOVA_04515 at 455.621 kb on - strand, within BACOVA_04515 at 455.651 kb on - strand, within BACOVA_04515 at 455.663 kb on + strand, within BACOVA_04515 at 455.663 kb on + strand, within BACOVA_04515 at 455.663 kb on + strand, within BACOVA_04515 at 455.699 kb on + strand, within BACOVA_04515 at 455.764 kb on + strand at 455.792 kb on - strand at 455.893 kb on - strand at 455.893 kb on - strand at 455.897 kb on + strand at 455.942 kb on + strand at 455.963 kb on + strand at 456.123 kb on + strand, within BACOVA_04516 at 456.204 kb on + strand, within BACOVA_04516 at 456.275 kb on + strand, within BACOVA_04516 at 456.275 kb on + strand, within BACOVA_04516 at 456.276 kb on - strand, within BACOVA_04516 at 456.276 kb on - strand, within BACOVA_04516 at 456.276 kb on - strand, within BACOVA_04516 at 456.276 kb on - strand, within BACOVA_04516 at 456.326 kb on + strand, within BACOVA_04516 at 456.327 kb on - strand, within BACOVA_04516 at 456.327 kb on - strand, within BACOVA_04516 at 456.331 kb on + strand, within BACOVA_04516 at 456.332 kb on - strand, within BACOVA_04516 at 456.332 kb on - strand, within BACOVA_04516 at 456.346 kb on + strand, within BACOVA_04516 at 456.347 kb on - strand, within BACOVA_04516 at 456.378 kb on + strand, within BACOVA_04516 at 456.379 kb on - strand, within BACOVA_04516 at 456.381 kb on + strand, within BACOVA_04516 at 456.381 kb on + strand, within BACOVA_04516 at 456.381 kb on + strand, within BACOVA_04516 at 456.381 kb on + strand, within BACOVA_04516 at 456.382 kb on - strand, within BACOVA_04516 at 456.385 kb on + strand, within BACOVA_04516 at 456.386 kb on - strand, within BACOVA_04516 at 456.386 kb on - strand, within BACOVA_04516 at 456.409 kb on - strand, within BACOVA_04516 at 456.465 kb on - strand, within BACOVA_04516 at 456.498 kb on - strand, within BACOVA_04516 at 456.498 kb on - strand, within BACOVA_04516 at 456.508 kb on + strand, within BACOVA_04516 at 456.517 kb on + strand, within BACOVA_04516 at 456.518 kb on - strand, within BACOVA_04516 at 456.518 kb on - strand, within BACOVA_04516 at 456.548 kb on - strand, within BACOVA_04516 at 456.563 kb on - strand, within BACOVA_04516 at 456.603 kb on + strand, within BACOVA_04516 at 456.610 kb on + strand, within BACOVA_04516 at 456.610 kb on + strand, within BACOVA_04516 at 456.611 kb on - strand, within BACOVA_04516 at 456.615 kb on - strand, within BACOVA_04516 at 456.630 kb on + strand, within BACOVA_04516 at 456.630 kb on + strand, within BACOVA_04516 at 456.630 kb on + strand, within BACOVA_04516 at 456.630 kb on + strand, within BACOVA_04516 at 456.631 kb on - strand, within BACOVA_04516 at 456.646 kb on + strand, within BACOVA_04516 at 456.647 kb on - strand, within BACOVA_04516 at 456.675 kb on + strand, within BACOVA_04516 at 456.685 kb on - strand, within BACOVA_04516 at 456.698 kb on - strand, within BACOVA_04516 at 456.754 kb on + strand, within BACOVA_04516 at 456.756 kb on + strand, within BACOVA_04516
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 453,675 + BACOVA_04514 0.25 -0.3 453,676 - BACOVA_04514 0.25 -0.1 453,692 - BACOVA_04514 0.26 -0.3 453,746 + BACOVA_04514 0.30 -1.0 453,757 + BACOVA_04514 0.31 -1.5 453,757 + BACOVA_04514 0.31 +1.6 453,757 + BACOVA_04514 0.31 +1.2 453,758 - BACOVA_04514 0.31 -0.6 453,758 - BACOVA_04514 0.31 +0.2 453,758 - BACOVA_04514 0.31 +0.4 453,760 - BACOVA_04514 0.32 -1.4 453,767 + BACOVA_04514 0.32 +0.1 453,771 - BACOVA_04514 0.32 -1.0 453,781 - BACOVA_04514 0.33 -0.4 453,939 + BACOVA_04514 0.45 -1.6 453,983 + BACOVA_04514 0.48 -1.0 453,984 - BACOVA_04514 0.48 +0.5 454,029 + BACOVA_04514 0.52 -2.1 454,167 + BACOVA_04514 0.62 +2.0 454,217 + BACOVA_04514 0.66 -0.2 454,217 + BACOVA_04514 0.66 -2.1 454,217 + BACOVA_04514 0.66 +0.6 454,217 + BACOVA_04514 0.66 -1.7 454,218 - BACOVA_04514 0.66 -0.9 454,218 - BACOVA_04514 0.66 -2.0 454,218 - BACOVA_04514 0.66 -1.6 454,221 + BACOVA_04514 0.66 -2.9 454,221 + BACOVA_04514 0.66 -1.0 454,247 - BACOVA_04514 0.68 -2.5 454,297 + BACOVA_04514 0.72 -0.0 454,298 - BACOVA_04514 0.72 +0.2 454,303 + BACOVA_04514 0.72 +1.2 454,303 + BACOVA_04514 0.72 +1.3 454,304 - BACOVA_04514 0.73 +0.3 454,304 - BACOVA_04514 0.73 -3.0 454,304 - BACOVA_04514 0.73 -2.3 454,304 - BACOVA_04514 0.73 -2.2 454,324 - BACOVA_04514 0.74 +1.4 454,362 + BACOVA_04514 0.77 -1.5 454,362 + BACOVA_04514 0.77 +1.4 454,424 - BACOVA_04514 0.82 -0.2 454,459 - BACOVA_04514 0.84 -2.3 454,471 - BACOVA_04514 0.85 +0.8 454,547 - -1.2 454,547 - -1.1 454,569 + -0.0 454,637 + +0.1 454,761 + +1.5 454,761 + +1.8 454,774 + +3.0 454,793 + BACOVA_04515 0.11 -0.0 454,843 + BACOVA_04515 0.15 -2.0 454,979 + BACOVA_04515 0.26 -1.0 454,980 + BACOVA_04515 0.26 -0.4 454,980 + BACOVA_04515 0.26 -0.2 454,999 + BACOVA_04515 0.28 -0.5 455,090 + BACOVA_04515 0.35 -0.2 455,095 + BACOVA_04515 0.36 +1.5 455,096 - BACOVA_04515 0.36 -0.4 455,098 + BACOVA_04515 0.36 +1.2 455,099 - BACOVA_04515 0.36 -3.0 455,134 + BACOVA_04515 0.39 -0.4 455,198 + BACOVA_04515 0.44 -1.0 455,198 + BACOVA_04515 0.44 -0.1 455,199 - BACOVA_04515 0.44 +0.7 455,269 + BACOVA_04515 0.50 -1.5 455,292 + BACOVA_04515 0.52 -0.0 455,297 + BACOVA_04515 0.52 -2.0 455,297 + BACOVA_04515 0.52 +1.7 455,309 - BACOVA_04515 0.53 -0.6 455,309 - BACOVA_04515 0.53 -0.0 455,310 + BACOVA_04515 0.54 +1.8 455,311 - BACOVA_04515 0.54 +0.3 455,343 + BACOVA_04515 0.56 -3.2 455,343 + BACOVA_04515 0.56 +1.5 455,343 + BACOVA_04515 0.56 -2.6 455,344 - BACOVA_04515 0.56 -1.9 455,344 - BACOVA_04515 0.56 -1.3 455,345 + BACOVA_04515 0.56 -0.3 455,374 + BACOVA_04515 0.59 -2.1 455,377 + BACOVA_04515 0.59 +0.9 455,378 - BACOVA_04515 0.59 +0.7 455,382 + BACOVA_04515 0.60 -1.5 455,383 - BACOVA_04515 0.60 +0.6 455,384 + BACOVA_04515 0.60 +1.3 455,385 - BACOVA_04515 0.60 -3.4 455,385 - BACOVA_04515 0.60 -0.2 455,413 + BACOVA_04515 0.62 +0.6 455,477 + BACOVA_04515 0.67 -3.0 455,487 + BACOVA_04515 0.68 -0.0 455,488 - BACOVA_04515 0.68 +0.6 455,597 + BACOVA_04515 0.77 -2.9 455,598 - BACOVA_04515 0.77 +0.9 455,599 + BACOVA_04515 0.78 -0.6 455,616 - BACOVA_04515 0.79 +2.5 455,621 - BACOVA_04515 0.79 +0.4 455,651 - BACOVA_04515 0.82 -0.6 455,663 + BACOVA_04515 0.83 +2.7 455,663 + BACOVA_04515 0.83 -2.3 455,663 + BACOVA_04515 0.83 -0.6 455,699 + BACOVA_04515 0.86 -1.5 455,764 + +0.8 455,792 - +0.3 455,893 - -0.3 455,893 - -1.8 455,897 + -0.5 455,942 + -0.9 455,963 + -1.3 456,123 + BACOVA_04516 0.10 -1.4 456,204 + BACOVA_04516 0.17 +1.5 456,275 + BACOVA_04516 0.23 +0.6 456,275 + BACOVA_04516 0.23 -4.4 456,276 - BACOVA_04516 0.23 +1.6 456,276 - BACOVA_04516 0.23 +1.6 456,276 - BACOVA_04516 0.23 -0.0 456,276 - BACOVA_04516 0.23 -3.4 456,326 + BACOVA_04516 0.27 +0.6 456,327 - BACOVA_04516 0.27 +1.1 456,327 - BACOVA_04516 0.27 -1.4 456,331 + BACOVA_04516 0.28 -0.2 456,332 - BACOVA_04516 0.28 -0.5 456,332 - BACOVA_04516 0.28 -0.7 456,346 + BACOVA_04516 0.29 +1.6 456,347 - BACOVA_04516 0.29 +0.5 456,378 + BACOVA_04516 0.32 -0.0 456,379 - BACOVA_04516 0.32 +0.1 456,381 + BACOVA_04516 0.32 +1.8 456,381 + BACOVA_04516 0.32 -1.1 456,381 + BACOVA_04516 0.32 +1.1 456,381 + BACOVA_04516 0.32 -0.7 456,382 - BACOVA_04516 0.32 +0.4 456,385 + BACOVA_04516 0.32 -2.4 456,386 - BACOVA_04516 0.32 -2.4 456,386 - BACOVA_04516 0.32 -0.3 456,409 - BACOVA_04516 0.34 -1.3 456,465 - BACOVA_04516 0.39 -0.1 456,498 - BACOVA_04516 0.42 +1.2 456,498 - BACOVA_04516 0.42 -1.5 456,508 + BACOVA_04516 0.43 -0.8 456,517 + BACOVA_04516 0.43 -0.0 456,518 - BACOVA_04516 0.43 -2.3 456,518 - BACOVA_04516 0.43 -0.2 456,548 - BACOVA_04516 0.46 +0.7 456,563 - BACOVA_04516 0.47 +0.3 456,603 + BACOVA_04516 0.51 -1.5 456,610 + BACOVA_04516 0.51 +0.3 456,610 + BACOVA_04516 0.51 +0.5 456,611 - BACOVA_04516 0.51 -3.3 456,615 - BACOVA_04516 0.52 -0.4 456,630 + BACOVA_04516 0.53 -2.0 456,630 + BACOVA_04516 0.53 -0.8 456,630 + BACOVA_04516 0.53 -3.1 456,630 + BACOVA_04516 0.53 -4.2 456,631 - BACOVA_04516 0.53 -0.6 456,646 + BACOVA_04516 0.54 +1.3 456,647 - BACOVA_04516 0.54 -1.4 456,675 + BACOVA_04516 0.57 -2.3 456,685 - BACOVA_04516 0.57 -2.1 456,698 - BACOVA_04516 0.59 -1.1 456,754 + BACOVA_04516 0.63 -1.5 456,756 + BACOVA_04516 0.63 -0.0
Or see this region's nucleotide sequence