Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04126

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04124 and BACOVA_04125 are separated by 2 nucleotidesBACOVA_04125 and BACOVA_04126 are separated by 3 nucleotidesBACOVA_04126 and BACOVA_04127 are separated by 31 nucleotides BACOVA_04124: BACOVA_04124 - oxidoreductase, short chain dehydrogenase/reductase family protein, at 477,509 to 478,396 _04124 BACOVA_04125: BACOVA_04125 - hypothetical protein, at 478,399 to 478,506 _04125 BACOVA_04126: BACOVA_04126 - Alpha-L-rhamnosidase N-terminal domain protein, at 478,510 to 482,370 _04126 BACOVA_04127: BACOVA_04127 - hypothetical protein, at 482,402 to 483,868 _04127 Position (kb) 478 479 480 481 482 483Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 477.517 kb on + strandat 477.518 kb on - strandat 477.551 kb on - strandat 477.617 kb on - strand, within BACOVA_04124at 477.628 kb on + strand, within BACOVA_04124at 477.682 kb on - strand, within BACOVA_04124at 477.825 kb on + strand, within BACOVA_04124at 477.826 kb on - strand, within BACOVA_04124at 477.859 kb on - strand, within BACOVA_04124at 477.883 kb on + strand, within BACOVA_04124at 477.884 kb on - strand, within BACOVA_04124at 477.918 kb on - strand, within BACOVA_04124at 477.931 kb on + strand, within BACOVA_04124at 477.934 kb on + strand, within BACOVA_04124at 477.960 kb on - strand, within BACOVA_04124at 478.012 kb on + strand, within BACOVA_04124at 478.051 kb on + strand, within BACOVA_04124at 478.051 kb on + strand, within BACOVA_04124at 478.052 kb on - strand, within BACOVA_04124at 478.100 kb on - strand, within BACOVA_04124at 478.143 kb on - strand, within BACOVA_04124at 478.143 kb on - strand, within BACOVA_04124at 478.187 kb on + strand, within BACOVA_04124at 478.188 kb on - strand, within BACOVA_04124at 478.226 kb on - strand, within BACOVA_04124at 478.226 kb on - strand, within BACOVA_04124at 478.230 kb on - strand, within BACOVA_04124at 478.316 kb on - strandat 478.316 kb on - strandat 478.360 kb on - strandat 478.383 kb on + strandat 478.384 kb on - strandat 478.384 kb on - strandat 478.388 kb on - strandat 478.431 kb on - strand, within BACOVA_04125at 478.440 kb on - strand, within BACOVA_04125at 478.440 kb on - strand, within BACOVA_04125at 478.444 kb on - strand, within BACOVA_04125at 478.511 kb on + strandat 478.529 kb on - strandat 478.542 kb on + strandat 478.542 kb on + strandat 478.566 kb on - strandat 478.633 kb on - strandat 478.639 kb on + strandat 478.640 kb on - strandat 478.729 kb on - strandat 478.743 kb on - strandat 478.746 kb on + strandat 478.752 kb on + strandat 478.752 kb on + strandat 478.819 kb on + strandat 478.865 kb on - strandat 478.865 kb on - strandat 478.876 kb on - strandat 478.897 kb on + strand, within BACOVA_04126at 478.912 kb on - strand, within BACOVA_04126at 479.035 kb on + strand, within BACOVA_04126at 479.157 kb on + strand, within BACOVA_04126at 479.158 kb on - strand, within BACOVA_04126at 479.176 kb on - strand, within BACOVA_04126at 479.176 kb on - strand, within BACOVA_04126at 479.178 kb on + strand, within BACOVA_04126at 479.178 kb on + strand, within BACOVA_04126at 479.286 kb on + strand, within BACOVA_04126at 479.287 kb on - strand, within BACOVA_04126at 479.358 kb on + strand, within BACOVA_04126at 479.358 kb on + strand, within BACOVA_04126at 479.358 kb on + strand, within BACOVA_04126at 479.358 kb on + strand, within BACOVA_04126at 479.359 kb on - strand, within BACOVA_04126at 479.359 kb on - strand, within BACOVA_04126at 479.388 kb on + strand, within BACOVA_04126at 479.413 kb on + strand, within BACOVA_04126at 479.414 kb on - strand, within BACOVA_04126at 479.493 kb on + strand, within BACOVA_04126at 479.500 kb on + strand, within BACOVA_04126at 479.578 kb on + strand, within BACOVA_04126at 479.669 kb on - strand, within BACOVA_04126at 479.682 kb on - strand, within BACOVA_04126at 479.726 kb on - strand, within BACOVA_04126at 479.800 kb on + strand, within BACOVA_04126at 479.810 kb on + strand, within BACOVA_04126at 479.878 kb on - strand, within BACOVA_04126at 479.953 kb on - strand, within BACOVA_04126at 480.010 kb on + strand, within BACOVA_04126at 480.021 kb on + strand, within BACOVA_04126at 480.022 kb on - strand, within BACOVA_04126at 480.045 kb on + strand, within BACOVA_04126at 480.045 kb on + strand, within BACOVA_04126at 480.046 kb on - strand, within BACOVA_04126at 480.046 kb on - strand, within BACOVA_04126at 480.046 kb on - strand, within BACOVA_04126at 480.048 kb on - strand, within BACOVA_04126at 480.062 kb on + strand, within BACOVA_04126at 480.082 kb on + strand, within BACOVA_04126at 480.083 kb on - strand, within BACOVA_04126at 480.086 kb on + strand, within BACOVA_04126at 480.087 kb on - strand, within BACOVA_04126at 480.091 kb on + strand, within BACOVA_04126at 480.127 kb on + strand, within BACOVA_04126at 480.157 kb on + strand, within BACOVA_04126at 480.157 kb on + strand, within BACOVA_04126at 480.158 kb on - strand, within BACOVA_04126at 480.158 kb on - strand, within BACOVA_04126at 480.160 kb on - strand, within BACOVA_04126at 480.160 kb on - strand, within BACOVA_04126at 480.177 kb on + strand, within BACOVA_04126at 480.177 kb on + strand, within BACOVA_04126at 480.178 kb on - strand, within BACOVA_04126at 480.178 kb on - strand, within BACOVA_04126at 480.202 kb on - strand, within BACOVA_04126at 480.218 kb on + strand, within BACOVA_04126at 480.218 kb on + strand, within BACOVA_04126at 480.218 kb on + strand, within BACOVA_04126at 480.256 kb on - strand, within BACOVA_04126at 480.277 kb on - strand, within BACOVA_04126at 480.288 kb on + strand, within BACOVA_04126at 480.288 kb on + strand, within BACOVA_04126at 480.291 kb on + strand, within BACOVA_04126at 480.301 kb on + strand, within BACOVA_04126at 480.302 kb on - strand, within BACOVA_04126at 480.302 kb on - strand, within BACOVA_04126at 480.306 kb on + strand, within BACOVA_04126at 480.306 kb on + strand, within BACOVA_04126at 480.306 kb on + strand, within BACOVA_04126at 480.338 kb on - strand, within BACOVA_04126at 480.338 kb on - strand, within BACOVA_04126at 480.451 kb on + strand, within BACOVA_04126at 480.452 kb on - strand, within BACOVA_04126at 480.452 kb on - strand, within BACOVA_04126at 480.452 kb on - strand, within BACOVA_04126at 480.511 kb on - strand, within BACOVA_04126at 480.557 kb on + strand, within BACOVA_04126at 480.576 kb on + strand, within BACOVA_04126at 480.577 kb on - strand, within BACOVA_04126at 480.592 kb on - strand, within BACOVA_04126at 480.592 kb on - strand, within BACOVA_04126at 480.596 kb on + strand, within BACOVA_04126at 480.596 kb on + strand, within BACOVA_04126at 480.635 kb on + strand, within BACOVA_04126at 480.763 kb on - strand, within BACOVA_04126at 480.813 kb on - strand, within BACOVA_04126at 480.813 kb on - strand, within BACOVA_04126at 480.821 kb on + strand, within BACOVA_04126at 480.821 kb on + strand, within BACOVA_04126at 480.861 kb on + strand, within BACOVA_04126at 480.924 kb on - strand, within BACOVA_04126at 480.999 kb on + strand, within BACOVA_04126at 481.019 kb on - strand, within BACOVA_04126at 481.058 kb on + strand, within BACOVA_04126at 481.073 kb on - strand, within BACOVA_04126at 481.077 kb on - strand, within BACOVA_04126at 481.096 kb on - strand, within BACOVA_04126at 481.096 kb on - strand, within BACOVA_04126at 481.096 kb on - strand, within BACOVA_04126at 481.113 kb on + strand, within BACOVA_04126at 481.114 kb on - strand, within BACOVA_04126at 481.145 kb on + strand, within BACOVA_04126at 481.145 kb on + strand, within BACOVA_04126at 481.146 kb on - strand, within BACOVA_04126at 481.146 kb on - strand, within BACOVA_04126at 481.147 kb on + strand, within BACOVA_04126at 481.147 kb on + strand, within BACOVA_04126at 481.147 kb on + strand, within BACOVA_04126at 481.148 kb on - strand, within BACOVA_04126at 481.148 kb on - strand, within BACOVA_04126at 481.301 kb on + strand, within BACOVA_04126at 481.301 kb on + strand, within BACOVA_04126at 481.396 kb on - strand, within BACOVA_04126at 481.433 kb on + strand, within BACOVA_04126at 481.475 kb on + strand, within BACOVA_04126at 481.491 kb on - strand, within BACOVA_04126at 481.497 kb on + strand, within BACOVA_04126at 481.497 kb on + strand, within BACOVA_04126at 481.516 kb on + strand, within BACOVA_04126at 481.521 kb on + strand, within BACOVA_04126at 481.522 kb on - strand, within BACOVA_04126at 481.545 kb on + strand, within BACOVA_04126at 481.574 kb on + strand, within BACOVA_04126at 481.574 kb on + strand, within BACOVA_04126at 481.622 kb on - strand, within BACOVA_04126at 481.627 kb on - strand, within BACOVA_04126at 481.635 kb on + strand, within BACOVA_04126at 481.654 kb on - strand, within BACOVA_04126at 481.656 kb on - strand, within BACOVA_04126at 481.678 kb on + strand, within BACOVA_04126at 481.713 kb on + strand, within BACOVA_04126at 481.721 kb on + strand, within BACOVA_04126at 481.721 kb on + strand, within BACOVA_04126at 481.831 kb on - strand, within BACOVA_04126at 481.835 kb on - strand, within BACOVA_04126at 481.835 kb on - strand, within BACOVA_04126at 482.035 kb on + strandat 482.035 kb on + strandat 482.036 kb on - strandat 482.110 kb on - strandat 482.136 kb on + strandat 482.137 kb on - strandat 482.159 kb on - strandat 482.189 kb on + strandat 482.200 kb on + strandat 482.260 kb on - strandat 482.299 kb on + strandat 482.300 kb on - strandat 482.305 kb on + strandat 482.305 kb on + strandat 482.306 kb on - strandat 482.315 kb on + strandat 482.317 kb on + strandat 482.318 kb on - strandat 482.356 kb on + strandat 482.370 kb on + strandat 482.371 kb on - strandat 482.407 kb on + strandat 482.453 kb on + strandat 482.456 kb on - strandat 482.457 kb on + strandat 482.458 kb on - strandat 482.465 kb on - strandat 482.468 kb on - strandat 482.560 kb on - strand, within BACOVA_04127at 482.569 kb on + strand, within BACOVA_04127at 482.652 kb on + strand, within BACOVA_04127at 482.659 kb on - strand, within BACOVA_04127at 482.659 kb on - strand, within BACOVA_04127at 482.826 kb on + strand, within BACOVA_04127at 482.827 kb on - strand, within BACOVA_04127at 482.847 kb on + strand, within BACOVA_04127at 482.848 kb on - strand, within BACOVA_04127at 482.872 kb on + strand, within BACOVA_04127at 482.899 kb on - strand, within BACOVA_04127at 482.902 kb on + strand, within BACOVA_04127at 483.331 kb on + strand, within BACOVA_04127at 483.346 kb on + strand, within BACOVA_04127at 483.347 kb on - strand, within BACOVA_04127at 483.348 kb on + strand, within BACOVA_04127

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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477,517 + -2.0
477,518 - +1.6
477,551 - -0.8
477,617 - BACOVA_04124 0.12 -1.2
477,628 + BACOVA_04124 0.13 +0.0
477,682 - BACOVA_04124 0.19 -0.7
477,825 + BACOVA_04124 0.36 -3.4
477,826 - BACOVA_04124 0.36 -2.8
477,859 - BACOVA_04124 0.39 -1.7
477,883 + BACOVA_04124 0.42 +1.2
477,884 - BACOVA_04124 0.42 +0.8
477,918 - BACOVA_04124 0.46 +0.4
477,931 + BACOVA_04124 0.48 +4.4
477,934 + BACOVA_04124 0.48 -0.6
477,960 - BACOVA_04124 0.51 -0.2
478,012 + BACOVA_04124 0.57 -1.3
478,051 + BACOVA_04124 0.61 -1.0
478,051 + BACOVA_04124 0.61 +0.1
478,052 - BACOVA_04124 0.61 +1.9
478,100 - BACOVA_04124 0.67 +2.7
478,143 - BACOVA_04124 0.71 +2.1
478,143 - BACOVA_04124 0.71 +0.5
478,187 + BACOVA_04124 0.76 -1.9
478,188 - BACOVA_04124 0.76 +0.1
478,226 - BACOVA_04124 0.81 -0.6
478,226 - BACOVA_04124 0.81 +0.7
478,230 - BACOVA_04124 0.81 +0.6
478,316 - -0.9
478,316 - +0.4
478,360 - -1.8
478,383 + -1.3
478,384 - -1.3
478,384 - -1.0
478,388 - +1.3
478,431 - BACOVA_04125 0.30 -2.6
478,440 - BACOVA_04125 0.38 +3.0
478,440 - BACOVA_04125 0.38 -0.4
478,444 - BACOVA_04125 0.42 +0.8
478,511 + -2.7
478,529 - +0.9
478,542 + +0.0
478,542 + -1.0
478,566 - -0.1
478,633 - +1.7
478,639 + -1.9
478,640 - +1.8
478,729 - -0.8
478,743 - -1.3
478,746 + -1.3
478,752 + -0.5
478,752 + -2.6
478,819 + +1.3
478,865 - +0.8
478,865 - -0.9
478,876 - -0.9
478,897 + BACOVA_04126 0.10 +1.2
478,912 - BACOVA_04126 0.10 +0.4
479,035 + BACOVA_04126 0.14 -0.9
479,157 + BACOVA_04126 0.17 -1.9
479,158 - BACOVA_04126 0.17 -1.7
479,176 - BACOVA_04126 0.17 -1.2
479,176 - BACOVA_04126 0.17 -1.0
479,178 + BACOVA_04126 0.17 -1.2
479,178 + BACOVA_04126 0.17 -1.0
479,286 + BACOVA_04126 0.20 +0.3
479,287 - BACOVA_04126 0.20 -0.9
479,358 + BACOVA_04126 0.22 -3.1
479,358 + BACOVA_04126 0.22 -1.8
479,358 + BACOVA_04126 0.22 +0.1
479,358 + BACOVA_04126 0.22 +1.9
479,359 - BACOVA_04126 0.22 +2.6
479,359 - BACOVA_04126 0.22 +0.3
479,388 + BACOVA_04126 0.23 -2.2
479,413 + BACOVA_04126 0.23 -0.5
479,414 - BACOVA_04126 0.23 -2.3
479,493 + BACOVA_04126 0.25 -0.1
479,500 + BACOVA_04126 0.26 -1.0
479,578 + BACOVA_04126 0.28 +1.3
479,669 - BACOVA_04126 0.30 +1.5
479,682 - BACOVA_04126 0.30 -1.7
479,726 - BACOVA_04126 0.31 -2.9
479,800 + BACOVA_04126 0.33 -0.4
479,810 + BACOVA_04126 0.34 -0.4
479,878 - BACOVA_04126 0.35 -0.8
479,953 - BACOVA_04126 0.37 +1.9
480,010 + BACOVA_04126 0.39 -0.8
480,021 + BACOVA_04126 0.39 -0.6
480,022 - BACOVA_04126 0.39 -0.3
480,045 + BACOVA_04126 0.40 +0.7
480,045 + BACOVA_04126 0.40 -2.8
480,046 - BACOVA_04126 0.40 +0.9
480,046 - BACOVA_04126 0.40 -2.0
480,046 - BACOVA_04126 0.40 -2.2
480,048 - BACOVA_04126 0.40 -0.5
480,062 + BACOVA_04126 0.40 -1.3
480,082 + BACOVA_04126 0.41 -2.5
480,083 - BACOVA_04126 0.41 +1.9
480,086 + BACOVA_04126 0.41 +0.9
480,087 - BACOVA_04126 0.41 +0.9
480,091 + BACOVA_04126 0.41 -0.8
480,127 + BACOVA_04126 0.42 +0.5
480,157 + BACOVA_04126 0.43 +0.8
480,157 + BACOVA_04126 0.43 -0.7
480,158 - BACOVA_04126 0.43 +0.7
480,158 - BACOVA_04126 0.43 -0.9
480,160 - BACOVA_04126 0.43 +1.3
480,160 - BACOVA_04126 0.43 -0.7
480,177 + BACOVA_04126 0.43 -3.2
480,177 + BACOVA_04126 0.43 +1.2
480,178 - BACOVA_04126 0.43 -1.0
480,178 - BACOVA_04126 0.43 -3.0
480,202 - BACOVA_04126 0.44 -1.9
480,218 + BACOVA_04126 0.44 +0.1
480,218 + BACOVA_04126 0.44 -0.3
480,218 + BACOVA_04126 0.44 -4.0
480,256 - BACOVA_04126 0.45 +1.0
480,277 - BACOVA_04126 0.46 +0.9
480,288 + BACOVA_04126 0.46 +0.6
480,288 + BACOVA_04126 0.46 +0.3
480,291 + BACOVA_04126 0.46 +2.0
480,301 + BACOVA_04126 0.46 -0.5
480,302 - BACOVA_04126 0.46 +0.0
480,302 - BACOVA_04126 0.46 +2.6
480,306 + BACOVA_04126 0.47 +0.1
480,306 + BACOVA_04126 0.47 +2.8
480,306 + BACOVA_04126 0.47 +1.1
480,338 - BACOVA_04126 0.47 +0.1
480,338 - BACOVA_04126 0.47 +0.0
480,451 + BACOVA_04126 0.50 +2.3
480,452 - BACOVA_04126 0.50 -0.7
480,452 - BACOVA_04126 0.50 +0.1
480,452 - BACOVA_04126 0.50 -0.5
480,511 - BACOVA_04126 0.52 +1.9
480,557 + BACOVA_04126 0.53 -2.0
480,576 + BACOVA_04126 0.54 -3.4
480,577 - BACOVA_04126 0.54 -1.2
480,592 - BACOVA_04126 0.54 +0.0
480,592 - BACOVA_04126 0.54 -2.6
480,596 + BACOVA_04126 0.54 -1.3
480,596 + BACOVA_04126 0.54 -2.1
480,635 + BACOVA_04126 0.55 -0.9
480,763 - BACOVA_04126 0.58 -2.7
480,813 - BACOVA_04126 0.60 -0.8
480,813 - BACOVA_04126 0.60 -0.5
480,821 + BACOVA_04126 0.60 +0.1
480,821 + BACOVA_04126 0.60 +0.3
480,861 + BACOVA_04126 0.61 -1.2
480,924 - BACOVA_04126 0.63 -1.5
480,999 + BACOVA_04126 0.64 -0.1
481,019 - BACOVA_04126 0.65 -0.1
481,058 + BACOVA_04126 0.66 -0.0
481,073 - BACOVA_04126 0.66 +1.8
481,077 - BACOVA_04126 0.66 +0.1
481,096 - BACOVA_04126 0.67 -0.4
481,096 - BACOVA_04126 0.67 +0.7
481,096 - BACOVA_04126 0.67 -2.5
481,113 + BACOVA_04126 0.67 -3.0
481,114 - BACOVA_04126 0.67 -0.0
481,145 + BACOVA_04126 0.68 -1.2
481,145 + BACOVA_04126 0.68 -0.6
481,146 - BACOVA_04126 0.68 -1.7
481,146 - BACOVA_04126 0.68 +2.1
481,147 + BACOVA_04126 0.68 -1.5
481,147 + BACOVA_04126 0.68 +0.3
481,147 + BACOVA_04126 0.68 +1.9
481,148 - BACOVA_04126 0.68 +1.3
481,148 - BACOVA_04126 0.68 -0.5
481,301 + BACOVA_04126 0.72 +2.1
481,301 + BACOVA_04126 0.72 +0.8
481,396 - BACOVA_04126 0.75 +1.1
481,433 + BACOVA_04126 0.76 -0.9
481,475 + BACOVA_04126 0.77 +2.4
481,491 - BACOVA_04126 0.77 -0.4
481,497 + BACOVA_04126 0.77 -0.5
481,497 + BACOVA_04126 0.77 +0.7
481,516 + BACOVA_04126 0.78 -2.0
481,521 + BACOVA_04126 0.78 -0.1
481,522 - BACOVA_04126 0.78 -3.1
481,545 + BACOVA_04126 0.79 +0.8
481,574 + BACOVA_04126 0.79 +0.2
481,574 + BACOVA_04126 0.79 -2.0
481,622 - BACOVA_04126 0.81 -2.4
481,627 - BACOVA_04126 0.81 -3.7
481,635 + BACOVA_04126 0.81 -2.1
481,654 - BACOVA_04126 0.81 +1.5
481,656 - BACOVA_04126 0.81 -1.5
481,678 + BACOVA_04126 0.82 +1.5
481,713 + BACOVA_04126 0.83 -2.9
481,721 + BACOVA_04126 0.83 -0.4
481,721 + BACOVA_04126 0.83 +1.7
481,831 - BACOVA_04126 0.86 +0.6
481,835 - BACOVA_04126 0.86 -2.1
481,835 - BACOVA_04126 0.86 +0.1
482,035 + -2.4
482,035 + -1.6
482,036 - -1.2
482,110 - -1.5
482,136 + +0.1
482,137 - -1.0
482,159 - -1.5
482,189 + -0.5
482,200 + +0.8
482,260 - +0.1
482,299 + +1.7
482,300 - +0.9
482,305 + +0.5
482,305 + +1.1
482,306 - -0.2
482,315 + -4.0
482,317 + -0.6
482,318 - -3.5
482,356 + -3.3
482,370 + -1.0
482,371 - -1.6
482,407 + +1.1
482,453 + -1.6
482,456 - -2.1
482,457 + -0.5
482,458 - -1.2
482,465 - -2.1
482,468 - -0.9
482,560 - BACOVA_04127 0.11 +2.3
482,569 + BACOVA_04127 0.11 -3.2
482,652 + BACOVA_04127 0.17 -2.4
482,659 - BACOVA_04127 0.18 +2.4
482,659 - BACOVA_04127 0.18 +1.3
482,826 + BACOVA_04127 0.29 -1.8
482,827 - BACOVA_04127 0.29 -2.0
482,847 + BACOVA_04127 0.30 +0.5
482,848 - BACOVA_04127 0.30 -0.7
482,872 + BACOVA_04127 0.32 -1.5
482,899 - BACOVA_04127 0.34 -0.5
482,902 + BACOVA_04127 0.34 -2.0
483,331 + BACOVA_04127 0.63 -2.0
483,346 + BACOVA_04127 0.64 +1.8
483,347 - BACOVA_04127 0.64 +1.2
483,348 + BACOVA_04127 0.64 -3.5

Or see this region's nucleotide sequence