Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04103

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04100 and BACOVA_04101 are separated by 117 nucleotidesBACOVA_04101 and BACOVA_04102 are separated by 78 nucleotidesBACOVA_04102 and BACOVA_04103 are separated by 86 nucleotidesBACOVA_04103 and BACOVA_04104 are separated by 18 nucleotides BACOVA_04100: BACOVA_04100 - site-specific recombinase, phage integrase family, at 436,427 to 437,662 _04100 BACOVA_04101: BACOVA_04101 - hypothetical protein, at 437,780 to 437,971 _04101 BACOVA_04102: BACOVA_04102 - hypothetical protein, at 438,050 to 438,202 _04102 BACOVA_04103: BACOVA_04103 - TonB-linked outer membrane protein, SusC/RagA family, at 438,289 to 441,117 _04103 BACOVA_04104: BACOVA_04104 - hypothetical protein, at 441,136 to 442,713 _04104 Position (kb) 438 439 440 441 442Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 439.477 kb on - strand, within BACOVA_04103at 439.536 kb on + strand, within BACOVA_04103at 439.537 kb on - strand, within BACOVA_04103at 439.543 kb on - strand, within BACOVA_04103at 439.543 kb on - strand, within BACOVA_04103at 439.543 kb on - strand, within BACOVA_04103at 439.543 kb on - strand, within BACOVA_04103at 439.555 kb on + strand, within BACOVA_04103at 439.556 kb on - strand, within BACOVA_04103at 439.556 kb on - strand, within BACOVA_04103at 439.557 kb on + strand, within BACOVA_04103at 439.557 kb on + strand, within BACOVA_04103at 439.558 kb on - strand, within BACOVA_04103at 439.558 kb on - strand, within BACOVA_04103at 439.564 kb on + strand, within BACOVA_04103at 439.565 kb on - strand, within BACOVA_04103at 439.605 kb on + strand, within BACOVA_04103at 439.609 kb on - strand, within BACOVA_04103at 439.612 kb on - strand, within BACOVA_04103at 439.614 kb on + strand, within BACOVA_04103at 439.647 kb on + strand, within BACOVA_04103at 439.672 kb on + strand, within BACOVA_04103at 439.730 kb on + strand, within BACOVA_04103at 439.730 kb on + strand, within BACOVA_04103at 439.731 kb on - strand, within BACOVA_04103at 439.734 kb on + strand, within BACOVA_04103at 439.735 kb on - strand, within BACOVA_04103at 439.737 kb on + strand, within BACOVA_04103at 439.737 kb on + strand, within BACOVA_04103at 439.737 kb on + strand, within BACOVA_04103at 439.743 kb on + strand, within BACOVA_04103at 439.744 kb on - strand, within BACOVA_04103at 439.756 kb on - strand, within BACOVA_04103at 439.761 kb on + strand, within BACOVA_04103at 439.761 kb on + strand, within BACOVA_04103at 439.766 kb on - strand, within BACOVA_04103at 439.770 kb on + strand, within BACOVA_04103at 439.773 kb on - strand, within BACOVA_04103at 439.784 kb on - strand, within BACOVA_04103at 439.836 kb on + strand, within BACOVA_04103at 439.843 kb on + strand, within BACOVA_04103at 439.844 kb on - strand, within BACOVA_04103at 439.844 kb on - strand, within BACOVA_04103at 439.844 kb on - strand, within BACOVA_04103at 439.844 kb on - strand, within BACOVA_04103at 439.844 kb on - strand, within BACOVA_04103at 439.845 kb on + strand, within BACOVA_04103at 439.863 kb on + strand, within BACOVA_04103at 439.864 kb on - strand, within BACOVA_04103at 439.864 kb on - strand, within BACOVA_04103at 439.959 kb on - strand, within BACOVA_04103at 439.976 kb on - strand, within BACOVA_04103at 440.006 kb on + strand, within BACOVA_04103at 440.007 kb on - strand, within BACOVA_04103at 440.016 kb on + strand, within BACOVA_04103at 440.017 kb on - strand, within BACOVA_04103at 440.023 kb on - strand, within BACOVA_04103at 440.081 kb on + strand, within BACOVA_04103at 440.121 kb on + strand, within BACOVA_04103at 440.124 kb on + strand, within BACOVA_04103at 440.160 kb on + strand, within BACOVA_04103at 440.166 kb on + strand, within BACOVA_04103at 440.167 kb on - strand, within BACOVA_04103at 440.192 kb on - strand, within BACOVA_04103at 440.199 kb on + strand, within BACOVA_04103at 440.200 kb on - strand, within BACOVA_04103at 440.246 kb on + strand, within BACOVA_04103at 440.246 kb on + strand, within BACOVA_04103at 440.247 kb on - strand, within BACOVA_04103at 440.247 kb on - strand, within BACOVA_04103at 440.248 kb on + strand, within BACOVA_04103at 440.256 kb on + strand, within BACOVA_04103at 440.257 kb on - strand, within BACOVA_04103at 440.260 kb on + strand, within BACOVA_04103at 440.261 kb on - strand, within BACOVA_04103at 440.275 kb on - strand, within BACOVA_04103at 440.286 kb on + strand, within BACOVA_04103at 440.307 kb on - strand, within BACOVA_04103at 440.367 kb on - strand, within BACOVA_04103at 440.416 kb on - strand, within BACOVA_04103at 440.443 kb on - strand, within BACOVA_04103at 440.443 kb on - strand, within BACOVA_04103at 440.464 kb on - strand, within BACOVA_04103at 440.470 kb on - strand, within BACOVA_04103at 440.503 kb on + strand, within BACOVA_04103at 440.503 kb on + strand, within BACOVA_04103at 440.503 kb on + strand, within BACOVA_04103at 440.504 kb on - strand, within BACOVA_04103at 440.543 kb on + strand, within BACOVA_04103at 440.544 kb on - strand, within BACOVA_04103at 440.544 kb on - strand, within BACOVA_04103at 440.545 kb on + strand, within BACOVA_04103at 440.548 kb on - strand, within BACOVA_04103at 440.622 kb on - strand, within BACOVA_04103at 440.657 kb on + strand, within BACOVA_04103at 440.673 kb on + strand, within BACOVA_04103at 440.674 kb on - strand, within BACOVA_04103at 440.709 kb on + strand, within BACOVA_04103at 440.710 kb on - strand, within BACOVA_04103at 440.716 kb on - strand, within BACOVA_04103at 440.830 kb on + strand, within BACOVA_04103at 440.865 kb on + strandat 440.865 kb on + strandat 440.869 kb on + strandat 440.873 kb on + strandat 440.873 kb on + strandat 440.874 kb on - strandat 440.874 kb on - strandat 440.875 kb on + strandat 440.877 kb on + strandat 440.877 kb on + strandat 440.878 kb on - strandat 440.883 kb on + strandat 440.941 kb on - strandat 440.941 kb on - strandat 440.958 kb on + strandat 440.995 kb on + strandat 440.996 kb on - strandat 440.997 kb on + strandat 441.000 kb on + strandat 441.040 kb on - strandat 441.044 kb on - strandat 441.044 kb on - strandat 441.101 kb on + strandat 441.107 kb on + strandat 441.144 kb on - strandat 441.168 kb on + strandat 441.169 kb on - strandat 441.180 kb on + strandat 441.181 kb on - strandat 441.204 kb on - strandat 441.222 kb on + strandat 441.235 kb on - strandat 441.306 kb on - strand, within BACOVA_04104at 441.326 kb on + strand, within BACOVA_04104at 441.344 kb on - strand, within BACOVA_04104at 441.393 kb on - strand, within BACOVA_04104at 441.433 kb on + strand, within BACOVA_04104at 441.433 kb on + strand, within BACOVA_04104at 441.434 kb on - strand, within BACOVA_04104at 441.434 kb on - strand, within BACOVA_04104at 441.434 kb on - strand, within BACOVA_04104at 441.435 kb on + strand, within BACOVA_04104at 441.436 kb on - strand, within BACOVA_04104at 441.456 kb on - strand, within BACOVA_04104at 441.456 kb on - strand, within BACOVA_04104at 441.477 kb on + strand, within BACOVA_04104at 441.478 kb on - strand, within BACOVA_04104at 441.482 kb on + strand, within BACOVA_04104at 441.482 kb on + strand, within BACOVA_04104at 441.482 kb on + strand, within BACOVA_04104at 441.497 kb on - strand, within BACOVA_04104at 441.515 kb on + strand, within BACOVA_04104at 441.516 kb on - strand, within BACOVA_04104at 441.543 kb on + strand, within BACOVA_04104at 441.544 kb on - strand, within BACOVA_04104at 441.588 kb on + strand, within BACOVA_04104at 441.589 kb on - strand, within BACOVA_04104at 441.598 kb on - strand, within BACOVA_04104at 441.602 kb on - strand, within BACOVA_04104at 441.602 kb on - strand, within BACOVA_04104at 441.602 kb on - strand, within BACOVA_04104at 441.602 kb on - strand, within BACOVA_04104at 441.637 kb on - strand, within BACOVA_04104at 441.673 kb on + strand, within BACOVA_04104at 441.673 kb on + strand, within BACOVA_04104at 441.673 kb on + strand, within BACOVA_04104at 441.681 kb on + strand, within BACOVA_04104at 441.681 kb on + strand, within BACOVA_04104at 441.708 kb on + strand, within BACOVA_04104at 441.709 kb on - strand, within BACOVA_04104at 441.709 kb on - strand, within BACOVA_04104at 441.725 kb on - strand, within BACOVA_04104at 441.760 kb on - strand, within BACOVA_04104at 441.763 kb on + strand, within BACOVA_04104at 441.763 kb on + strand, within BACOVA_04104at 441.769 kb on - strand, within BACOVA_04104at 441.825 kb on - strand, within BACOVA_04104at 441.828 kb on + strand, within BACOVA_04104at 441.829 kb on - strand, within BACOVA_04104at 441.829 kb on - strand, within BACOVA_04104at 441.840 kb on + strand, within BACOVA_04104at 441.844 kb on - strand, within BACOVA_04104at 441.863 kb on - strand, within BACOVA_04104at 441.889 kb on - strand, within BACOVA_04104at 441.900 kb on + strand, within BACOVA_04104at 441.912 kb on + strand, within BACOVA_04104at 441.928 kb on - strand, within BACOVA_04104at 441.928 kb on - strand, within BACOVA_04104at 441.962 kb on - strand, within BACOVA_04104at 441.974 kb on + strand, within BACOVA_04104at 442.008 kb on + strand, within BACOVA_04104at 442.008 kb on + strand, within BACOVA_04104at 442.008 kb on + strand, within BACOVA_04104at 442.008 kb on + strand, within BACOVA_04104at 442.009 kb on - strand, within BACOVA_04104at 442.009 kb on - strand, within BACOVA_04104at 442.009 kb on - strand, within BACOVA_04104at 442.015 kb on + strand, within BACOVA_04104at 442.028 kb on - strand, within BACOVA_04104at 442.091 kb on - strand, within BACOVA_04104at 442.117 kb on + strand, within BACOVA_04104

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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439,477 - BACOVA_04103 0.42 -1.8
439,536 + BACOVA_04103 0.44 +1.6
439,537 - BACOVA_04103 0.44 -0.7
439,543 - BACOVA_04103 0.44 +0.8
439,543 - BACOVA_04103 0.44 +1.4
439,543 - BACOVA_04103 0.44 -0.5
439,543 - BACOVA_04103 0.44 +3.0
439,555 + BACOVA_04103 0.45 +2.7
439,556 - BACOVA_04103 0.45 +0.1
439,556 - BACOVA_04103 0.45 -1.0
439,557 + BACOVA_04103 0.45 -0.3
439,557 + BACOVA_04103 0.45 -0.8
439,558 - BACOVA_04103 0.45 -3.2
439,558 - BACOVA_04103 0.45 +0.3
439,564 + BACOVA_04103 0.45 +0.6
439,565 - BACOVA_04103 0.45 -0.9
439,605 + BACOVA_04103 0.47 +0.4
439,609 - BACOVA_04103 0.47 +0.3
439,612 - BACOVA_04103 0.47 +0.8
439,614 + BACOVA_04103 0.47 +1.5
439,647 + BACOVA_04103 0.48 -3.0
439,672 + BACOVA_04103 0.49 +1.7
439,730 + BACOVA_04103 0.51 +2.8
439,730 + BACOVA_04103 0.51 -0.2
439,731 - BACOVA_04103 0.51 +1.2
439,734 + BACOVA_04103 0.51 +0.6
439,735 - BACOVA_04103 0.51 +1.5
439,737 + BACOVA_04103 0.51 -1.7
439,737 + BACOVA_04103 0.51 -1.7
439,737 + BACOVA_04103 0.51 +3.5
439,743 + BACOVA_04103 0.51 -0.5
439,744 - BACOVA_04103 0.51 -2.0
439,756 - BACOVA_04103 0.52 +0.7
439,761 + BACOVA_04103 0.52 -1.6
439,761 + BACOVA_04103 0.52 -1.8
439,766 - BACOVA_04103 0.52 +0.5
439,770 + BACOVA_04103 0.52 +0.1
439,773 - BACOVA_04103 0.52 -0.3
439,784 - BACOVA_04103 0.53 +1.2
439,836 + BACOVA_04103 0.55 -2.0
439,843 + BACOVA_04103 0.55 -0.9
439,844 - BACOVA_04103 0.55 -0.5
439,844 - BACOVA_04103 0.55 +0.8
439,844 - BACOVA_04103 0.55 -0.0
439,844 - BACOVA_04103 0.55 -3.0
439,844 - BACOVA_04103 0.55 +1.0
439,845 + BACOVA_04103 0.55 -0.5
439,863 + BACOVA_04103 0.56 -0.5
439,864 - BACOVA_04103 0.56 +0.0
439,864 - BACOVA_04103 0.56 -0.6
439,959 - BACOVA_04103 0.59 -1.9
439,976 - BACOVA_04103 0.60 +2.1
440,006 + BACOVA_04103 0.61 +2.1
440,007 - BACOVA_04103 0.61 -2.3
440,016 + BACOVA_04103 0.61 +0.4
440,017 - BACOVA_04103 0.61 -1.7
440,023 - BACOVA_04103 0.61 -1.0
440,081 + BACOVA_04103 0.63 -2.3
440,121 + BACOVA_04103 0.65 -1.6
440,124 + BACOVA_04103 0.65 +1.0
440,160 + BACOVA_04103 0.66 -2.6
440,166 + BACOVA_04103 0.66 -1.0
440,167 - BACOVA_04103 0.66 -1.6
440,192 - BACOVA_04103 0.67 +2.8
440,199 + BACOVA_04103 0.68 -2.1
440,200 - BACOVA_04103 0.68 -2.6
440,246 + BACOVA_04103 0.69 -1.0
440,246 + BACOVA_04103 0.69 +0.3
440,247 - BACOVA_04103 0.69 +0.6
440,247 - BACOVA_04103 0.69 -1.0
440,248 + BACOVA_04103 0.69 +2.9
440,256 + BACOVA_04103 0.70 -0.2
440,257 - BACOVA_04103 0.70 -0.3
440,260 + BACOVA_04103 0.70 -0.2
440,261 - BACOVA_04103 0.70 +0.1
440,275 - BACOVA_04103 0.70 +2.1
440,286 + BACOVA_04103 0.71 -1.8
440,307 - BACOVA_04103 0.71 -2.3
440,367 - BACOVA_04103 0.73 +0.0
440,416 - BACOVA_04103 0.75 +1.6
440,443 - BACOVA_04103 0.76 -2.6
440,443 - BACOVA_04103 0.76 +0.9
440,464 - BACOVA_04103 0.77 -0.9
440,470 - BACOVA_04103 0.77 +1.1
440,503 + BACOVA_04103 0.78 +1.3
440,503 + BACOVA_04103 0.78 -1.0
440,503 + BACOVA_04103 0.78 -0.9
440,504 - BACOVA_04103 0.78 -1.0
440,543 + BACOVA_04103 0.80 -1.6
440,544 - BACOVA_04103 0.80 -0.2
440,544 - BACOVA_04103 0.80 -0.3
440,545 + BACOVA_04103 0.80 +0.1
440,548 - BACOVA_04103 0.80 +0.5
440,622 - BACOVA_04103 0.82 -3.0
440,657 + BACOVA_04103 0.84 -0.5
440,673 + BACOVA_04103 0.84 -1.0
440,674 - BACOVA_04103 0.84 -0.7
440,709 + BACOVA_04103 0.86 -0.2
440,710 - BACOVA_04103 0.86 +1.1
440,716 - BACOVA_04103 0.86 -0.5
440,830 + BACOVA_04103 0.90 -2.7
440,865 + -0.7
440,865 + +1.3
440,869 + +0.9
440,873 + -1.5
440,873 + +0.8
440,874 - +2.0
440,874 - -3.3
440,875 + -1.0
440,877 + +1.9
440,877 + +1.2
440,878 - +2.9
440,883 + +0.8
440,941 - +0.2
440,941 - +0.5
440,958 + -0.5
440,995 + -0.2
440,996 - -1.5
440,997 + -0.1
441,000 + -0.2
441,040 - +0.9
441,044 - +1.1
441,044 - -1.7
441,101 + -0.3
441,107 + -3.6
441,144 - -3.1
441,168 + +0.1
441,169 - +1.0
441,180 + -2.2
441,181 - -1.0
441,204 - -0.9
441,222 + -1.1
441,235 - +0.8
441,306 - BACOVA_04104 0.11 -1.5
441,326 + BACOVA_04104 0.12 -0.5
441,344 - BACOVA_04104 0.13 -0.5
441,393 - BACOVA_04104 0.16 +0.8
441,433 + BACOVA_04104 0.19 -1.0
441,433 + BACOVA_04104 0.19 -0.9
441,434 - BACOVA_04104 0.19 +0.7
441,434 - BACOVA_04104 0.19 -0.2
441,434 - BACOVA_04104 0.19 -0.6
441,435 + BACOVA_04104 0.19 -0.2
441,436 - BACOVA_04104 0.19 -1.7
441,456 - BACOVA_04104 0.20 +0.0
441,456 - BACOVA_04104 0.20 -1.6
441,477 + BACOVA_04104 0.22 -0.6
441,478 - BACOVA_04104 0.22 +1.3
441,482 + BACOVA_04104 0.22 -1.9
441,482 + BACOVA_04104 0.22 +1.2
441,482 + BACOVA_04104 0.22 -1.8
441,497 - BACOVA_04104 0.23 +0.8
441,515 + BACOVA_04104 0.24 +1.1
441,516 - BACOVA_04104 0.24 +0.8
441,543 + BACOVA_04104 0.26 +0.4
441,544 - BACOVA_04104 0.26 +0.2
441,588 + BACOVA_04104 0.29 -1.6
441,589 - BACOVA_04104 0.29 +0.0
441,598 - BACOVA_04104 0.29 +0.3
441,602 - BACOVA_04104 0.30 -0.8
441,602 - BACOVA_04104 0.30 -0.2
441,602 - BACOVA_04104 0.30 -0.7
441,602 - BACOVA_04104 0.30 -1.0
441,637 - BACOVA_04104 0.32 +0.4
441,673 + BACOVA_04104 0.34 +0.1
441,673 + BACOVA_04104 0.34 +0.0
441,673 + BACOVA_04104 0.34 -2.5
441,681 + BACOVA_04104 0.35 +1.9
441,681 + BACOVA_04104 0.35 -2.1
441,708 + BACOVA_04104 0.36 -1.2
441,709 - BACOVA_04104 0.36 -2.9
441,709 - BACOVA_04104 0.36 -0.7
441,725 - BACOVA_04104 0.37 +0.8
441,760 - BACOVA_04104 0.40 -3.3
441,763 + BACOVA_04104 0.40 +1.1
441,763 + BACOVA_04104 0.40 -2.1
441,769 - BACOVA_04104 0.40 +1.9
441,825 - BACOVA_04104 0.44 -1.8
441,828 + BACOVA_04104 0.44 -0.2
441,829 - BACOVA_04104 0.44 +1.8
441,829 - BACOVA_04104 0.44 -0.9
441,840 + BACOVA_04104 0.45 -1.5
441,844 - BACOVA_04104 0.45 +3.0
441,863 - BACOVA_04104 0.46 +1.8
441,889 - BACOVA_04104 0.48 -1.0
441,900 + BACOVA_04104 0.48 -3.6
441,912 + BACOVA_04104 0.49 -1.9
441,928 - BACOVA_04104 0.50 +1.0
441,928 - BACOVA_04104 0.50 +2.0
441,962 - BACOVA_04104 0.52 -2.0
441,974 + BACOVA_04104 0.53 -0.9
442,008 + BACOVA_04104 0.55 -0.2
442,008 + BACOVA_04104 0.55 -0.9
442,008 + BACOVA_04104 0.55 -2.4
442,008 + BACOVA_04104 0.55 +0.2
442,009 - BACOVA_04104 0.55 -0.1
442,009 - BACOVA_04104 0.55 +1.2
442,009 - BACOVA_04104 0.55 -1.0
442,015 + BACOVA_04104 0.56 -0.9
442,028 - BACOVA_04104 0.57 -0.7
442,091 - BACOVA_04104 0.61 -1.1
442,117 + BACOVA_04104 0.62 -2.1

Or see this region's nucleotide sequence