Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04032 and BACOVA_04033 are separated by 63 nucleotides BACOVA_04033 and BACOVA_04034 are separated by 63 nucleotides BACOVA_04034 and BACOVA_04035 are separated by 96 nucleotides BACOVA_04035 and BACOVA_04036 are separated by 79 nucleotides
BACOVA_04032: BACOVA_04032 - hypothetical protein, at 364,469 to 365,716
_04032
BACOVA_04033: BACOVA_04033 - hypothetical protein, at 365,780 to 365,908
_04033
BACOVA_04034: BACOVA_04034 - putative YigZ family protein, at 365,972 to 366,589
_04034
BACOVA_04035: BACOVA_04035 - hypothetical protein, at 366,686 to 367,435
_04035
BACOVA_04036: BACOVA_04036 - HpaII restriction endonuclease, at 367,515 to 368,600
_04036
Position (kb) 365
366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 364.979 kb on + strand, within BACOVA_04032 at 365.015 kb on - strand, within BACOVA_04032 at 365.044 kb on + strand, within BACOVA_04032 at 365.056 kb on + strand, within BACOVA_04032 at 365.057 kb on - strand, within BACOVA_04032 at 365.089 kb on + strand, within BACOVA_04032 at 365.186 kb on + strand, within BACOVA_04032 at 365.234 kb on + strand, within BACOVA_04032 at 365.306 kb on + strand, within BACOVA_04032 at 365.333 kb on + strand, within BACOVA_04032 at 365.333 kb on + strand, within BACOVA_04032 at 365.333 kb on + strand, within BACOVA_04032 at 365.333 kb on + strand, within BACOVA_04032 at 365.334 kb on - strand, within BACOVA_04032 at 365.334 kb on - strand, within BACOVA_04032 at 365.377 kb on + strand, within BACOVA_04032 at 365.411 kb on + strand, within BACOVA_04032 at 365.411 kb on + strand, within BACOVA_04032 at 365.412 kb on - strand, within BACOVA_04032 at 365.412 kb on - strand, within BACOVA_04032 at 365.413 kb on + strand, within BACOVA_04032 at 365.414 kb on - strand, within BACOVA_04032 at 365.428 kb on + strand, within BACOVA_04032 at 365.447 kb on - strand, within BACOVA_04032 at 365.485 kb on + strand, within BACOVA_04032 at 365.486 kb on - strand, within BACOVA_04032 at 365.608 kb on + strand at 365.608 kb on + strand at 365.609 kb on - strand at 365.627 kb on - strand at 365.635 kb on + strand at 365.644 kb on + strand at 365.644 kb on + strand at 365.645 kb on - strand at 365.647 kb on + strand at 365.648 kb on - strand at 365.648 kb on - strand at 365.702 kb on - strand at 365.704 kb on + strand at 365.709 kb on + strand at 365.768 kb on + strand at 365.769 kb on - strand at 365.810 kb on + strand, within BACOVA_04033 at 365.811 kb on - strand, within BACOVA_04033 at 365.841 kb on + strand, within BACOVA_04033 at 365.841 kb on + strand, within BACOVA_04033 at 365.842 kb on - strand, within BACOVA_04033 at 365.844 kb on - strand, within BACOVA_04033 at 365.844 kb on - strand, within BACOVA_04033 at 365.919 kb on - strand at 365.919 kb on - strand at 365.987 kb on - strand at 365.990 kb on + strand at 365.991 kb on - strand at 365.991 kb on - strand at 365.992 kb on + strand at 366.020 kb on - strand at 366.024 kb on - strand at 366.024 kb on - strand at 366.053 kb on - strand, within BACOVA_04034 at 366.084 kb on + strand, within BACOVA_04034 at 366.104 kb on + strand, within BACOVA_04034 at 366.117 kb on - strand, within BACOVA_04034 at 366.117 kb on - strand, within BACOVA_04034 at 366.120 kb on - strand, within BACOVA_04034 at 366.136 kb on - strand, within BACOVA_04034 at 366.136 kb on - strand, within BACOVA_04034 at 366.146 kb on + strand, within BACOVA_04034 at 366.146 kb on + strand, within BACOVA_04034 at 366.146 kb on + strand, within BACOVA_04034 at 366.146 kb on + strand, within BACOVA_04034 at 366.147 kb on - strand, within BACOVA_04034 at 366.148 kb on + strand, within BACOVA_04034 at 366.149 kb on - strand, within BACOVA_04034 at 366.221 kb on - strand, within BACOVA_04034 at 366.258 kb on + strand, within BACOVA_04034 at 366.259 kb on - strand, within BACOVA_04034 at 366.365 kb on - strand, within BACOVA_04034 at 366.415 kb on + strand, within BACOVA_04034 at 366.415 kb on + strand, within BACOVA_04034 at 366.473 kb on + strand, within BACOVA_04034 at 366.487 kb on + strand, within BACOVA_04034 at 366.523 kb on + strand, within BACOVA_04034 at 366.524 kb on - strand, within BACOVA_04034 at 366.580 kb on + strand at 366.588 kb on - strand at 366.591 kb on + strand at 366.592 kb on - strand at 366.600 kb on - strand at 366.605 kb on + strand at 366.609 kb on - strand at 366.611 kb on + strand at 366.636 kb on + strand at 366.681 kb on + strand at 366.739 kb on + strand at 366.740 kb on - strand at 366.832 kb on + strand, within BACOVA_04035 at 366.851 kb on - strand, within BACOVA_04035 at 366.860 kb on - strand, within BACOVA_04035 at 366.893 kb on + strand, within BACOVA_04035 at 366.893 kb on + strand, within BACOVA_04035 at 366.965 kb on + strand, within BACOVA_04035 at 366.966 kb on - strand, within BACOVA_04035 at 366.996 kb on - strand, within BACOVA_04035 at 367.012 kb on - strand, within BACOVA_04035 at 367.060 kb on + strand, within BACOVA_04035 at 367.061 kb on - strand, within BACOVA_04035 at 367.087 kb on - strand, within BACOVA_04035 at 367.087 kb on - strand, within BACOVA_04035 at 367.097 kb on + strand, within BACOVA_04035 at 367.099 kb on + strand, within BACOVA_04035 at 367.169 kb on - strand, within BACOVA_04035 at 367.169 kb on - strand, within BACOVA_04035 at 367.235 kb on + strand, within BACOVA_04035 at 367.269 kb on - strand, within BACOVA_04035 at 367.303 kb on - strand, within BACOVA_04035 at 367.347 kb on + strand, within BACOVA_04035 at 367.381 kb on + strand at 367.382 kb on - strand at 367.383 kb on + strand at 367.384 kb on - strand at 367.384 kb on - strand at 367.384 kb on - strand at 367.413 kb on + strand at 367.446 kb on + strand at 367.447 kb on - strand at 367.450 kb on + strand at 367.466 kb on + strand at 367.477 kb on + strand at 367.492 kb on - strand at 367.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 364,979 + BACOVA_04032 0.41 -0.5 365,015 - BACOVA_04032 0.44 +2.6 365,044 + BACOVA_04032 0.46 -1.7 365,056 + BACOVA_04032 0.47 -2.1 365,057 - BACOVA_04032 0.47 +0.9 365,089 + BACOVA_04032 0.50 -0.0 365,186 + BACOVA_04032 0.57 -3.3 365,234 + BACOVA_04032 0.61 -1.5 365,306 + BACOVA_04032 0.67 -1.5 365,333 + BACOVA_04032 0.69 +2.6 365,333 + BACOVA_04032 0.69 +0.5 365,333 + BACOVA_04032 0.69 -2.7 365,333 + BACOVA_04032 0.69 -0.9 365,334 - BACOVA_04032 0.69 +0.6 365,334 - BACOVA_04032 0.69 -0.9 365,377 + BACOVA_04032 0.73 -3.1 365,411 + BACOVA_04032 0.75 -3.0 365,411 + BACOVA_04032 0.75 +0.8 365,412 - BACOVA_04032 0.76 +2.3 365,412 - BACOVA_04032 0.76 -0.4 365,413 + BACOVA_04032 0.76 -2.9 365,414 - BACOVA_04032 0.76 -1.0 365,428 + BACOVA_04032 0.77 +0.6 365,447 - BACOVA_04032 0.78 +0.3 365,485 + BACOVA_04032 0.81 -0.4 365,486 - BACOVA_04032 0.81 -1.2 365,608 + -2.8 365,608 + -2.5 365,609 - +0.3 365,627 - +0.3 365,635 + -2.4 365,644 + -3.0 365,644 + -0.1 365,645 - -2.7 365,647 + -1.0 365,648 - +0.5 365,648 - -1.5 365,702 - -2.5 365,704 + -3.6 365,709 + +0.2 365,768 + +0.5 365,769 - -1.8 365,810 + BACOVA_04033 0.23 -0.5 365,811 - BACOVA_04033 0.24 +2.8 365,841 + BACOVA_04033 0.47 +3.0 365,841 + BACOVA_04033 0.47 -0.5 365,842 - BACOVA_04033 0.48 +1.5 365,844 - BACOVA_04033 0.50 -1.7 365,844 - BACOVA_04033 0.50 -1.6 365,919 - +3.2 365,919 - -2.2 365,987 - +0.1 365,990 + -1.0 365,991 - -2.0 365,991 - -2.4 365,992 + +2.3 366,020 - +1.8 366,024 - +0.9 366,024 - -0.5 366,053 - BACOVA_04034 0.13 +1.3 366,084 + BACOVA_04034 0.18 -1.2 366,104 + BACOVA_04034 0.21 -1.3 366,117 - BACOVA_04034 0.23 +2.9 366,117 - BACOVA_04034 0.23 -2.0 366,120 - BACOVA_04034 0.24 +2.1 366,136 - BACOVA_04034 0.27 -1.0 366,136 - BACOVA_04034 0.27 -3.5 366,146 + BACOVA_04034 0.28 -1.8 366,146 + BACOVA_04034 0.28 -0.1 366,146 + BACOVA_04034 0.28 -2.0 366,146 + BACOVA_04034 0.28 -1.0 366,147 - BACOVA_04034 0.28 -0.9 366,148 + BACOVA_04034 0.28 +0.6 366,149 - BACOVA_04034 0.29 +1.0 366,221 - BACOVA_04034 0.40 -1.7 366,258 + BACOVA_04034 0.46 -1.3 366,259 - BACOVA_04034 0.46 +1.0 366,365 - BACOVA_04034 0.64 -2.0 366,415 + BACOVA_04034 0.72 -0.2 366,415 + BACOVA_04034 0.72 -1.2 366,473 + BACOVA_04034 0.81 -1.3 366,487 + BACOVA_04034 0.83 -0.5 366,523 + BACOVA_04034 0.89 +2.7 366,524 - BACOVA_04034 0.89 -1.2 366,580 + +1.0 366,588 - -1.3 366,591 + +0.1 366,592 - +0.7 366,600 - -1.3 366,605 + +1.7 366,609 - -1.2 366,611 + +1.0 366,636 + -1.3 366,681 + -0.2 366,739 + +0.8 366,740 - -2.0 366,832 + BACOVA_04035 0.19 +0.7 366,851 - BACOVA_04035 0.22 +1.4 366,860 - BACOVA_04035 0.23 -0.9 366,893 + BACOVA_04035 0.28 -0.3 366,893 + BACOVA_04035 0.28 -0.7 366,965 + BACOVA_04035 0.37 -2.0 366,966 - BACOVA_04035 0.37 -3.0 366,996 - BACOVA_04035 0.41 +1.0 367,012 - BACOVA_04035 0.43 +3.0 367,060 + BACOVA_04035 0.50 -2.3 367,061 - BACOVA_04035 0.50 +2.2 367,087 - BACOVA_04035 0.53 +0.0 367,087 - BACOVA_04035 0.53 -1.6 367,097 + BACOVA_04035 0.55 +1.3 367,099 + BACOVA_04035 0.55 -1.3 367,169 - BACOVA_04035 0.64 -1.4 367,169 - BACOVA_04035 0.64 +1.8 367,235 + BACOVA_04035 0.73 +1.0 367,269 - BACOVA_04035 0.78 -0.6 367,303 - BACOVA_04035 0.82 -1.2 367,347 + BACOVA_04035 0.88 +3.0 367,381 + +0.2 367,382 - +0.4 367,383 + -1.5 367,384 - -1.3 367,384 - -0.5 367,384 - +0.8 367,413 + -1.8 367,446 + -1.2 367,447 - -2.0 367,450 + -2.5 367,466 + -0.7 367,477 + -0.9 367,492 - -1.1 367,513 - +1.6
Or see this region's nucleotide sequence