Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04015

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04014 and BACOVA_04015 overlap by 11 nucleotidesBACOVA_04015 and BACOVA_04016 are separated by 117 nucleotides BACOVA_04014: BACOVA_04014 - hypothetical protein, at 345,559 to 346,887 _04014 BACOVA_04015: BACOVA_04015 - hypothetical protein, at 346,877 to 348,994 _04015 BACOVA_04016: BACOVA_04016 - hypothetical protein, at 349,112 to 349,858 _04016 Position (kb) 346 347 348 349Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 346.079 kb on + strand, within BACOVA_04014at 346.080 kb on - strand, within BACOVA_04014at 346.135 kb on + strand, within BACOVA_04014at 346.136 kb on - strand, within BACOVA_04014at 346.141 kb on + strand, within BACOVA_04014at 346.141 kb on + strand, within BACOVA_04014at 346.142 kb on - strand, within BACOVA_04014at 346.144 kb on - strand, within BACOVA_04014at 346.189 kb on + strand, within BACOVA_04014at 346.190 kb on - strand, within BACOVA_04014at 346.277 kb on + strand, within BACOVA_04014at 346.277 kb on + strand, within BACOVA_04014at 346.278 kb on - strand, within BACOVA_04014at 346.407 kb on + strand, within BACOVA_04014at 346.408 kb on - strand, within BACOVA_04014at 346.408 kb on - strand, within BACOVA_04014at 346.408 kb on - strand, within BACOVA_04014at 346.526 kb on - strand, within BACOVA_04014at 346.585 kb on + strand, within BACOVA_04014at 346.592 kb on - strand, within BACOVA_04014at 346.609 kb on - strand, within BACOVA_04014at 346.689 kb on + strand, within BACOVA_04014at 346.689 kb on + strand, within BACOVA_04014at 346.691 kb on + strand, within BACOVA_04014at 346.740 kb on + strand, within BACOVA_04014at 346.758 kb on + strandat 346.764 kb on + strandat 346.799 kb on - strandat 346.810 kb on + strandat 346.870 kb on + strandat 346.871 kb on - strandat 346.916 kb on - strandat 346.919 kb on + strandat 346.928 kb on + strandat 346.943 kb on - strandat 346.980 kb on - strandat 346.987 kb on + strandat 346.989 kb on + strandat 347.222 kb on + strand, within BACOVA_04015at 347.282 kb on - strand, within BACOVA_04015at 347.308 kb on - strand, within BACOVA_04015at 347.327 kb on + strand, within BACOVA_04015at 347.345 kb on - strand, within BACOVA_04015at 347.414 kb on - strand, within BACOVA_04015at 347.454 kb on - strand, within BACOVA_04015at 347.491 kb on - strand, within BACOVA_04015at 347.544 kb on - strand, within BACOVA_04015at 347.552 kb on - strand, within BACOVA_04015at 347.552 kb on - strand, within BACOVA_04015at 347.633 kb on + strand, within BACOVA_04015at 347.645 kb on - strand, within BACOVA_04015at 347.648 kb on + strand, within BACOVA_04015at 347.799 kb on + strand, within BACOVA_04015at 347.800 kb on - strand, within BACOVA_04015at 347.852 kb on + strand, within BACOVA_04015at 347.853 kb on - strand, within BACOVA_04015at 347.909 kb on + strand, within BACOVA_04015at 347.909 kb on + strand, within BACOVA_04015at 347.923 kb on + strand, within BACOVA_04015at 347.998 kb on - strand, within BACOVA_04015at 348.008 kb on + strand, within BACOVA_04015at 348.013 kb on - strand, within BACOVA_04015at 348.023 kb on + strand, within BACOVA_04015at 348.024 kb on - strand, within BACOVA_04015at 348.032 kb on + strand, within BACOVA_04015at 348.043 kb on + strand, within BACOVA_04015at 348.085 kb on + strand, within BACOVA_04015at 348.250 kb on - strand, within BACOVA_04015at 348.334 kb on + strand, within BACOVA_04015at 348.351 kb on + strand, within BACOVA_04015at 348.351 kb on + strand, within BACOVA_04015at 348.418 kb on - strand, within BACOVA_04015at 348.459 kb on + strand, within BACOVA_04015at 348.591 kb on + strand, within BACOVA_04015at 348.596 kb on - strand, within BACOVA_04015at 348.596 kb on - strand, within BACOVA_04015at 348.613 kb on - strand, within BACOVA_04015at 348.616 kb on - strand, within BACOVA_04015at 348.627 kb on + strand, within BACOVA_04015at 348.655 kb on + strand, within BACOVA_04015at 348.655 kb on + strand, within BACOVA_04015at 348.656 kb on - strand, within BACOVA_04015at 348.657 kb on + strand, within BACOVA_04015at 348.658 kb on - strand, within BACOVA_04015at 348.658 kb on - strand, within BACOVA_04015at 348.710 kb on + strand, within BACOVA_04015at 348.714 kb on - strand, within BACOVA_04015at 348.741 kb on - strand, within BACOVA_04015at 348.751 kb on - strand, within BACOVA_04015at 348.756 kb on + strand, within BACOVA_04015at 348.757 kb on - strand, within BACOVA_04015at 348.757 kb on - strand, within BACOVA_04015at 348.763 kb on - strand, within BACOVA_04015at 348.815 kb on + strandat 348.872 kb on - strandat 348.923 kb on - strandat 348.951 kb on - strandat 348.960 kb on + strandat 348.960 kb on + strandat 348.960 kb on + strandat 349.003 kb on + strandat 349.004 kb on - strandat 349.006 kb on - strandat 349.009 kb on - strandat 349.047 kb on - strandat 349.050 kb on - strandat 349.076 kb on + strandat 349.077 kb on - strandat 349.104 kb on + strandat 349.141 kb on + strandat 349.183 kb on + strandat 349.191 kb on + strand, within BACOVA_04016at 349.191 kb on + strand, within BACOVA_04016at 349.191 kb on + strand, within BACOVA_04016at 349.192 kb on - strand, within BACOVA_04016at 349.223 kb on - strand, within BACOVA_04016at 349.227 kb on - strand, within BACOVA_04016at 349.294 kb on + strand, within BACOVA_04016at 349.294 kb on + strand, within BACOVA_04016at 349.328 kb on + strand, within BACOVA_04016at 349.356 kb on + strand, within BACOVA_04016at 349.356 kb on + strand, within BACOVA_04016at 349.357 kb on - strand, within BACOVA_04016at 349.367 kb on - strand, within BACOVA_04016at 349.422 kb on - strand, within BACOVA_04016at 349.472 kb on + strand, within BACOVA_04016at 349.496 kb on + strand, within BACOVA_04016at 349.503 kb on + strand, within BACOVA_04016at 349.527 kb on + strand, within BACOVA_04016at 349.561 kb on - strand, within BACOVA_04016at 349.739 kb on + strand, within BACOVA_04016at 349.764 kb on - strand, within BACOVA_04016at 349.808 kb on - strandat 349.823 kb on + strandat 349.823 kb on + strandat 349.847 kb on - strandat 349.872 kb on + strandat 349.893 kb on - strandat 349.906 kb on - strandat 349.924 kb on + strandat 349.924 kb on + strandat 349.938 kb on + strandat 349.938 kb on + strandat 349.938 kb on + strandat 349.939 kb on - strandat 349.945 kb on + strandat 349.946 kb on - strandat 349.951 kb on - strandat 349.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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346,079 + BACOVA_04014 0.39 +1.1
346,080 - BACOVA_04014 0.39 -0.7
346,135 + BACOVA_04014 0.43 +1.8
346,136 - BACOVA_04014 0.43 +0.9
346,141 + BACOVA_04014 0.44 -2.0
346,141 + BACOVA_04014 0.44 -1.3
346,142 - BACOVA_04014 0.44 -0.5
346,144 - BACOVA_04014 0.44 -2.8
346,189 + BACOVA_04014 0.47 -0.1
346,190 - BACOVA_04014 0.47 -0.9
346,277 + BACOVA_04014 0.54 -0.6
346,277 + BACOVA_04014 0.54 -1.3
346,278 - BACOVA_04014 0.54 -1.8
346,407 + BACOVA_04014 0.64 -1.2
346,408 - BACOVA_04014 0.64 -1.3
346,408 - BACOVA_04014 0.64 +1.7
346,408 - BACOVA_04014 0.64 -0.5
346,526 - BACOVA_04014 0.73 +0.3
346,585 + BACOVA_04014 0.77 +1.7
346,592 - BACOVA_04014 0.78 -0.5
346,609 - BACOVA_04014 0.79 -2.0
346,689 + BACOVA_04014 0.85 -0.5
346,689 + BACOVA_04014 0.85 -2.8
346,691 + BACOVA_04014 0.85 -0.2
346,740 + BACOVA_04014 0.89 -0.9
346,758 + +0.1
346,764 + -0.5
346,799 - -0.2
346,810 + -2.1
346,870 + -3.6
346,871 - -0.5
346,916 - +1.1
346,919 + +0.0
346,928 + -1.7
346,943 - -2.3
346,980 - +0.3
346,987 + -1.6
346,989 + -1.9
347,222 + BACOVA_04015 0.16 +0.1
347,282 - BACOVA_04015 0.19 +3.1
347,308 - BACOVA_04015 0.20 -0.9
347,327 + BACOVA_04015 0.21 +2.1
347,345 - BACOVA_04015 0.22 -2.3
347,414 - BACOVA_04015 0.25 -1.4
347,454 - BACOVA_04015 0.27 -2.8
347,491 - BACOVA_04015 0.29 -1.0
347,544 - BACOVA_04015 0.31 -0.5
347,552 - BACOVA_04015 0.32 -2.2
347,552 - BACOVA_04015 0.32 -1.3
347,633 + BACOVA_04015 0.36 +0.5
347,645 - BACOVA_04015 0.36 +0.8
347,648 + BACOVA_04015 0.36 +1.6
347,799 + BACOVA_04015 0.44 +1.3
347,800 - BACOVA_04015 0.44 +1.2
347,852 + BACOVA_04015 0.46 -0.5
347,853 - BACOVA_04015 0.46 -2.0
347,909 + BACOVA_04015 0.49 -1.6
347,909 + BACOVA_04015 0.49 -1.5
347,923 + BACOVA_04015 0.49 +0.7
347,998 - BACOVA_04015 0.53 -1.3
348,008 + BACOVA_04015 0.53 -0.2
348,013 - BACOVA_04015 0.54 -3.5
348,023 + BACOVA_04015 0.54 -0.5
348,024 - BACOVA_04015 0.54 -0.1
348,032 + BACOVA_04015 0.55 +1.7
348,043 + BACOVA_04015 0.55 -1.3
348,085 + BACOVA_04015 0.57 -1.2
348,250 - BACOVA_04015 0.65 +2.1
348,334 + BACOVA_04015 0.69 +0.5
348,351 + BACOVA_04015 0.70 +1.4
348,351 + BACOVA_04015 0.70 -0.9
348,418 - BACOVA_04015 0.73 +1.3
348,459 + BACOVA_04015 0.75 -3.7
348,591 + BACOVA_04015 0.81 +1.2
348,596 - BACOVA_04015 0.81 +0.7
348,596 - BACOVA_04015 0.81 +0.1
348,613 - BACOVA_04015 0.82 +0.9
348,616 - BACOVA_04015 0.82 -0.5
348,627 + BACOVA_04015 0.83 -1.7
348,655 + BACOVA_04015 0.84 -1.0
348,655 + BACOVA_04015 0.84 -1.0
348,656 - BACOVA_04015 0.84 +2.4
348,657 + BACOVA_04015 0.84 +1.8
348,658 - BACOVA_04015 0.84 -0.2
348,658 - BACOVA_04015 0.84 -1.6
348,710 + BACOVA_04015 0.87 +1.6
348,714 - BACOVA_04015 0.87 +1.0
348,741 - BACOVA_04015 0.88 +0.0
348,751 - BACOVA_04015 0.88 +2.0
348,756 + BACOVA_04015 0.89 +1.7
348,757 - BACOVA_04015 0.89 +1.1
348,757 - BACOVA_04015 0.89 -1.1
348,763 - BACOVA_04015 0.89 -1.1
348,815 + -0.9
348,872 - +0.1
348,923 - -0.5
348,951 - +0.9
348,960 + +1.1
348,960 + -2.0
348,960 + -1.5
349,003 + +1.4
349,004 - -0.2
349,006 - +1.1
349,009 - +2.7
349,047 - +0.1
349,050 - -2.5
349,076 + -1.3
349,077 - -0.7
349,104 + +0.9
349,141 + +1.5
349,183 + +2.1
349,191 + BACOVA_04016 0.11 -2.2
349,191 + BACOVA_04016 0.11 -1.0
349,191 + BACOVA_04016 0.11 +1.8
349,192 - BACOVA_04016 0.11 +2.6
349,223 - BACOVA_04016 0.15 +1.6
349,227 - BACOVA_04016 0.15 -1.3
349,294 + BACOVA_04016 0.24 -2.8
349,294 + BACOVA_04016 0.24 -2.7
349,328 + BACOVA_04016 0.29 -0.7
349,356 + BACOVA_04016 0.33 -2.5
349,356 + BACOVA_04016 0.33 -1.0
349,357 - BACOVA_04016 0.33 +1.8
349,367 - BACOVA_04016 0.34 -4.2
349,422 - BACOVA_04016 0.41 +0.1
349,472 + BACOVA_04016 0.48 -1.0
349,496 + BACOVA_04016 0.51 -0.9
349,503 + BACOVA_04016 0.52 +1.5
349,527 + BACOVA_04016 0.56 -0.9
349,561 - BACOVA_04016 0.60 -0.7
349,739 + BACOVA_04016 0.84 +2.2
349,764 - BACOVA_04016 0.87 -2.0
349,808 - -3.3
349,823 + +0.5
349,823 + -3.7
349,847 - -1.2
349,872 + +1.6
349,893 - -0.9
349,906 - +0.9
349,924 + -0.9
349,924 + +2.3
349,938 + -0.3
349,938 + -0.6
349,938 + +1.4
349,939 - -2.3
349,945 + +0.5
349,946 - -2.5
349,951 - -0.8
349,988 - +0.5

Or see this region's nucleotide sequence