Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03500 and BACOVA_03501 are separated by 101 nucleotides BACOVA_03501 and BACOVA_03502 are separated by 146 nucleotides
BACOVA_03500: BACOVA_03500 - acetate kinase, at 257,539 to 258,738
_03500
BACOVA_03501: BACOVA_03501 - glycosyltransferase, group 2 family protein, at 258,840 to 259,829
_03501
BACOVA_03502: BACOVA_03502 - glycosyl hydrolase family 20, catalytic domain protein, at 259,976 to 261,991
_03502
Position (kb) 258
259
260 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 258.723 kb on + strand at 258.733 kb on - strand at 258.750 kb on + strand at 258.757 kb on - strand at 258.819 kb on + strand at 258.823 kb on + strand at 258.823 kb on + strand at 258.846 kb on + strand at 259.827 kb on + strand at 259.847 kb on + strand at 259.850 kb on + strand at 259.850 kb on + strand at 259.851 kb on - strand at 259.902 kb on + strand at 259.902 kb on + strand at 259.931 kb on + strand at 259.932 kb on - strand at 259.934 kb on - strand at 259.934 kb on - strand at 259.953 kb on - strand at 259.979 kb on + strand at 259.984 kb on + strand at 259.985 kb on - strand at 259.985 kb on - strand at 259.985 kb on - strand at 260.025 kb on - strand at 260.078 kb on - strand at 260.127 kb on + strand at 260.245 kb on - strand, within BACOVA_03502 at 260.245 kb on - strand, within BACOVA_03502 at 260.395 kb on - strand, within BACOVA_03502 at 260.395 kb on - strand, within BACOVA_03502 at 260.416 kb on + strand, within BACOVA_03502 at 260.422 kb on + strand, within BACOVA_03502 at 260.423 kb on - strand, within BACOVA_03502 at 260.489 kb on + strand, within BACOVA_03502 at 260.490 kb on - strand, within BACOVA_03502 at 260.490 kb on - strand, within BACOVA_03502 at 260.561 kb on + strand, within BACOVA_03502 at 260.627 kb on + strand, within BACOVA_03502 at 260.627 kb on + strand, within BACOVA_03502 at 260.627 kb on + strand, within BACOVA_03502 at 260.629 kb on + strand, within BACOVA_03502 at 260.629 kb on + strand, within BACOVA_03502 at 260.633 kb on + strand, within BACOVA_03502 at 260.634 kb on - strand, within BACOVA_03502 at 260.634 kb on - strand, within BACOVA_03502 at 260.757 kb on + strand, within BACOVA_03502 at 260.757 kb on + strand, within BACOVA_03502 at 260.758 kb on - strand, within BACOVA_03502 at 260.759 kb on + strand, within BACOVA_03502 at 260.783 kb on - strand, within BACOVA_03502 at 260.791 kb on - strand, within BACOVA_03502 at 260.813 kb on + strand, within BACOVA_03502
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 258,723 + -1.5 258,733 - +0.1 258,750 + +0.2 258,757 - -0.2 258,819 + +0.5 258,823 + -1.5 258,823 + -2.5 258,846 + -1.1 259,827 + -1.1 259,847 + -0.4 259,850 + -0.4 259,850 + +0.8 259,851 - -2.7 259,902 + +0.5 259,902 + +0.4 259,931 + -0.6 259,932 - -1.4 259,934 - -4.1 259,934 - +1.0 259,953 - +0.3 259,979 + -2.0 259,984 + -0.3 259,985 - +0.7 259,985 - +1.7 259,985 - -0.4 260,025 - +1.0 260,078 - -1.0 260,127 + +0.4 260,245 - BACOVA_03502 0.13 -0.8 260,245 - BACOVA_03502 0.13 -3.0 260,395 - BACOVA_03502 0.21 -0.6 260,395 - BACOVA_03502 0.21 -2.2 260,416 + BACOVA_03502 0.22 -2.3 260,422 + BACOVA_03502 0.22 +0.4 260,423 - BACOVA_03502 0.22 -0.1 260,489 + BACOVA_03502 0.25 -0.8 260,490 - BACOVA_03502 0.25 -3.0 260,490 - BACOVA_03502 0.25 +2.5 260,561 + BACOVA_03502 0.29 -0.9 260,627 + BACOVA_03502 0.32 +0.5 260,627 + BACOVA_03502 0.32 +3.2 260,627 + BACOVA_03502 0.32 -0.2 260,629 + BACOVA_03502 0.32 -0.2 260,629 + BACOVA_03502 0.32 +1.8 260,633 + BACOVA_03502 0.33 -0.2 260,634 - BACOVA_03502 0.33 +1.3 260,634 - BACOVA_03502 0.33 +0.0 260,757 + BACOVA_03502 0.39 +0.3 260,757 + BACOVA_03502 0.39 -2.1 260,758 - BACOVA_03502 0.39 +0.1 260,759 + BACOVA_03502 0.39 +1.5 260,783 - BACOVA_03502 0.40 +1.2 260,791 - BACOVA_03502 0.40 -1.8 260,813 + BACOVA_03502 0.42 -1.4
Or see this region's nucleotide sequence