Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02439

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02437 and BACOVA_02438 are separated by 23 nucleotidesBACOVA_02438 and BACOVA_02439 are separated by 12 nucleotidesBACOVA_02439 and BACOVA_02440 are separated by 132 nucleotides BACOVA_02437: BACOVA_02437 - hypothetical protein, at 200,708 to 201,481 _02437 BACOVA_02438: BACOVA_02438 - response regulator receiver domain protein, at 201,505 to 202,200 _02438 BACOVA_02439: BACOVA_02439 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 202,213 to 203,730 _02439 BACOVA_02440: BACOVA_02440 - TonB-dependent receptor, at 203,863 to 205,971 _02440 Position (kb) 202 203 204Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 201.220 kb on + strand, within BACOVA_02437at 201.232 kb on + strand, within BACOVA_02437at 201.232 kb on + strand, within BACOVA_02437at 201.239 kb on - strand, within BACOVA_02437at 201.254 kb on + strand, within BACOVA_02437at 201.256 kb on + strand, within BACOVA_02437at 201.256 kb on + strand, within BACOVA_02437at 201.256 kb on + strand, within BACOVA_02437at 201.257 kb on - strand, within BACOVA_02437at 201.257 kb on - strand, within BACOVA_02437at 201.257 kb on - strand, within BACOVA_02437at 201.308 kb on + strand, within BACOVA_02437at 201.310 kb on + strand, within BACOVA_02437at 201.350 kb on + strand, within BACOVA_02437at 201.434 kb on - strandat 201.506 kb on + strandat 201.523 kb on - strandat 201.549 kb on + strandat 201.549 kb on + strandat 201.553 kb on + strandat 201.554 kb on - strandat 201.554 kb on - strandat 201.752 kb on - strand, within BACOVA_02438at 201.871 kb on + strand, within BACOVA_02438at 202.040 kb on - strand, within BACOVA_02438at 202.045 kb on + strand, within BACOVA_02438at 202.102 kb on - strand, within BACOVA_02438at 202.141 kb on - strandat 202.168 kb on + strandat 202.174 kb on + strandat 202.183 kb on - strandat 202.215 kb on - strandat 202.216 kb on + strandat 202.217 kb on - strandat 202.217 kb on - strandat 202.266 kb on + strandat 202.290 kb on + strandat 202.301 kb on + strandat 202.327 kb on + strandat 202.328 kb on - strandat 202.328 kb on - strandat 202.330 kb on - strandat 202.458 kb on + strand, within BACOVA_02439at 202.497 kb on + strand, within BACOVA_02439at 202.498 kb on - strand, within BACOVA_02439at 202.498 kb on - strand, within BACOVA_02439at 202.498 kb on - strand, within BACOVA_02439at 202.501 kb on + strand, within BACOVA_02439at 202.544 kb on - strand, within BACOVA_02439at 202.581 kb on + strand, within BACOVA_02439at 202.586 kb on - strand, within BACOVA_02439at 202.722 kb on + strand, within BACOVA_02439at 202.753 kb on + strand, within BACOVA_02439at 202.754 kb on - strand, within BACOVA_02439at 202.754 kb on - strand, within BACOVA_02439at 202.843 kb on + strand, within BACOVA_02439at 202.857 kb on + strand, within BACOVA_02439at 202.866 kb on + strand, within BACOVA_02439at 202.975 kb on - strand, within BACOVA_02439at 203.049 kb on + strand, within BACOVA_02439at 203.049 kb on + strand, within BACOVA_02439at 203.058 kb on - strand, within BACOVA_02439at 203.098 kb on - strand, within BACOVA_02439at 203.113 kb on + strand, within BACOVA_02439at 203.113 kb on + strand, within BACOVA_02439at 203.114 kb on - strand, within BACOVA_02439at 203.114 kb on - strand, within BACOVA_02439at 203.118 kb on + strand, within BACOVA_02439at 203.127 kb on - strand, within BACOVA_02439at 203.128 kb on + strand, within BACOVA_02439at 203.128 kb on + strand, within BACOVA_02439at 203.128 kb on + strand, within BACOVA_02439at 203.128 kb on + strand, within BACOVA_02439at 203.129 kb on - strand, within BACOVA_02439at 203.184 kb on + strand, within BACOVA_02439at 203.193 kb on + strand, within BACOVA_02439at 203.194 kb on - strand, within BACOVA_02439at 203.248 kb on + strand, within BACOVA_02439at 203.248 kb on + strand, within BACOVA_02439at 203.248 kb on + strand, within BACOVA_02439at 203.248 kb on + strand, within BACOVA_02439at 203.248 kb on + strand, within BACOVA_02439at 203.249 kb on + strand, within BACOVA_02439at 203.249 kb on - strand, within BACOVA_02439at 203.249 kb on - strand, within BACOVA_02439at 203.252 kb on + strand, within BACOVA_02439at 203.252 kb on + strand, within BACOVA_02439at 203.252 kb on + strand, within BACOVA_02439at 203.252 kb on + strand, within BACOVA_02439at 203.252 kb on + strand, within BACOVA_02439at 203.253 kb on - strand, within BACOVA_02439at 203.253 kb on - strand, within BACOVA_02439at 203.253 kb on - strand, within BACOVA_02439at 203.253 kb on - strand, within BACOVA_02439at 203.253 kb on - strand, within BACOVA_02439at 203.253 kb on - strand, within BACOVA_02439at 203.382 kb on + strand, within BACOVA_02439at 203.406 kb on + strand, within BACOVA_02439at 203.407 kb on - strand, within BACOVA_02439at 203.407 kb on - strand, within BACOVA_02439at 203.409 kb on + strand, within BACOVA_02439at 203.577 kb on + strand, within BACOVA_02439at 203.667 kb on - strandat 203.683 kb on + strandat 203.709 kb on + strandat 203.710 kb on - strandat 203.742 kb on + strandat 203.753 kb on + strandat 203.775 kb on - strandat 203.780 kb on + strandat 203.790 kb on + strandat 203.794 kb on + strandat 203.794 kb on + strandat 203.794 kb on + strandat 203.806 kb on - strandat 203.806 kb on - strandat 203.897 kb on + strandat 203.897 kb on + strandat 203.897 kb on + strandat 203.969 kb on + strandat 203.977 kb on - strandat 204.016 kb on - strandat 204.099 kb on + strand, within BACOVA_02440at 204.106 kb on + strand, within BACOVA_02440at 204.138 kb on - strand, within BACOVA_02440at 204.150 kb on + strand, within BACOVA_02440at 204.176 kb on + strand, within BACOVA_02440at 204.280 kb on + strand, within BACOVA_02440at 204.281 kb on - strand, within BACOVA_02440at 204.298 kb on + strand, within BACOVA_02440at 204.330 kb on - strand, within BACOVA_02440at 204.332 kb on + strand, within BACOVA_02440at 204.333 kb on - strand, within BACOVA_02440at 204.376 kb on + strand, within BACOVA_02440at 204.444 kb on + strand, within BACOVA_02440at 204.479 kb on - strand, within BACOVA_02440at 204.553 kb on - strand, within BACOVA_02440at 204.594 kb on - strand, within BACOVA_02440at 204.635 kb on + strand, within BACOVA_02440at 204.687 kb on + strand, within BACOVA_02440

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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201,220 + BACOVA_02437 0.66 -0.4
201,232 + BACOVA_02437 0.68 -2.9
201,232 + BACOVA_02437 0.68 +0.5
201,239 - BACOVA_02437 0.69 +0.4
201,254 + BACOVA_02437 0.71 +0.7
201,256 + BACOVA_02437 0.71 -0.3
201,256 + BACOVA_02437 0.71 -3.2
201,256 + BACOVA_02437 0.71 +0.7
201,257 - BACOVA_02437 0.71 +1.2
201,257 - BACOVA_02437 0.71 +0.9
201,257 - BACOVA_02437 0.71 -2.6
201,308 + BACOVA_02437 0.78 -3.1
201,310 + BACOVA_02437 0.78 -0.2
201,350 + BACOVA_02437 0.83 -1.7
201,434 - +0.8
201,506 + -2.4
201,523 - -3.3
201,549 + +0.6
201,549 + -0.7
201,553 + +3.2
201,554 - +0.0
201,554 - -0.6
201,752 - BACOVA_02438 0.35 -2.3
201,871 + BACOVA_02438 0.53 +0.1
202,040 - BACOVA_02438 0.77 -3.8
202,045 + BACOVA_02438 0.78 -1.7
202,102 - BACOVA_02438 0.86 +2.8
202,141 - +0.4
202,168 + +0.1
202,174 + -0.6
202,183 - -0.2
202,215 - +1.6
202,216 + +1.4
202,217 - -1.9
202,217 - +1.4
202,266 + -0.3
202,290 + +0.2
202,301 + +0.6
202,327 + +1.4
202,328 - +1.6
202,328 - -1.8
202,330 - -1.3
202,458 + BACOVA_02439 0.16 -0.9
202,497 + BACOVA_02439 0.19 -2.7
202,498 - BACOVA_02439 0.19 +1.0
202,498 - BACOVA_02439 0.19 -2.0
202,498 - BACOVA_02439 0.19 -1.8
202,501 + BACOVA_02439 0.19 +0.0
202,544 - BACOVA_02439 0.22 +1.2
202,581 + BACOVA_02439 0.24 +1.0
202,586 - BACOVA_02439 0.25 +2.2
202,722 + BACOVA_02439 0.34 -2.1
202,753 + BACOVA_02439 0.36 -2.5
202,754 - BACOVA_02439 0.36 +0.8
202,754 - BACOVA_02439 0.36 +0.7
202,843 + BACOVA_02439 0.42 -2.3
202,857 + BACOVA_02439 0.42 +0.7
202,866 + BACOVA_02439 0.43 +0.3
202,975 - BACOVA_02439 0.50 -1.4
203,049 + BACOVA_02439 0.55 -3.7
203,049 + BACOVA_02439 0.55 -3.5
203,058 - BACOVA_02439 0.56 -1.1
203,098 - BACOVA_02439 0.58 -0.0
203,113 + BACOVA_02439 0.59 +0.7
203,113 + BACOVA_02439 0.59 +0.2
203,114 - BACOVA_02439 0.59 -0.3
203,114 - BACOVA_02439 0.59 -1.0
203,118 + BACOVA_02439 0.60 +0.2
203,127 - BACOVA_02439 0.60 -1.6
203,128 + BACOVA_02439 0.60 -2.3
203,128 + BACOVA_02439 0.60 +1.2
203,128 + BACOVA_02439 0.60 +2.0
203,128 + BACOVA_02439 0.60 +1.0
203,129 - BACOVA_02439 0.60 +1.9
203,184 + BACOVA_02439 0.64 -1.1
203,193 + BACOVA_02439 0.65 -1.0
203,194 - BACOVA_02439 0.65 +2.0
203,248 + BACOVA_02439 0.68 -0.7
203,248 + BACOVA_02439 0.68 +0.2
203,248 + BACOVA_02439 0.68 -0.6
203,248 + BACOVA_02439 0.68 +1.7
203,248 + BACOVA_02439 0.68 -2.3
203,249 + BACOVA_02439 0.68 -0.4
203,249 - BACOVA_02439 0.68 +0.4
203,249 - BACOVA_02439 0.68 +0.8
203,252 + BACOVA_02439 0.68 -0.4
203,252 + BACOVA_02439 0.68 +0.8
203,252 + BACOVA_02439 0.68 -0.5
203,252 + BACOVA_02439 0.68 -0.9
203,252 + BACOVA_02439 0.68 -0.1
203,253 - BACOVA_02439 0.69 -0.4
203,253 - BACOVA_02439 0.69 -0.4
203,253 - BACOVA_02439 0.69 +1.3
203,253 - BACOVA_02439 0.69 +1.5
203,253 - BACOVA_02439 0.69 -1.1
203,253 - BACOVA_02439 0.69 -2.7
203,382 + BACOVA_02439 0.77 -2.7
203,406 + BACOVA_02439 0.79 -1.0
203,407 - BACOVA_02439 0.79 +0.8
203,407 - BACOVA_02439 0.79 -0.8
203,409 + BACOVA_02439 0.79 +0.8
203,577 + BACOVA_02439 0.90 -1.0
203,667 - -0.1
203,683 + -0.3
203,709 + -1.4
203,710 - -3.9
203,742 + +1.8
203,753 + +2.1
203,775 - -1.3
203,780 + -0.4
203,790 + -2.3
203,794 + -1.6
203,794 + +1.0
203,794 + +1.0
203,806 - -1.5
203,806 - -3.2
203,897 + -2.5
203,897 + -1.1
203,897 + -1.0
203,969 + -0.3
203,977 - -3.5
204,016 - +1.0
204,099 + BACOVA_02440 0.11 -0.4
204,106 + BACOVA_02440 0.12 -2.6
204,138 - BACOVA_02440 0.13 -0.1
204,150 + BACOVA_02440 0.14 -0.8
204,176 + BACOVA_02440 0.15 -0.0
204,280 + BACOVA_02440 0.20 +2.0
204,281 - BACOVA_02440 0.20 +1.0
204,298 + BACOVA_02440 0.21 -2.4
204,330 - BACOVA_02440 0.22 +2.0
204,332 + BACOVA_02440 0.22 +0.7
204,333 - BACOVA_02440 0.22 -1.5
204,376 + BACOVA_02440 0.24 -1.5
204,444 + BACOVA_02440 0.28 +0.9
204,479 - BACOVA_02440 0.29 -0.3
204,553 - BACOVA_02440 0.33 +2.4
204,594 - BACOVA_02440 0.35 -1.6
204,635 + BACOVA_02440 0.37 -0.1
204,687 + BACOVA_02440 0.39 +0.6

Or see this region's nucleotide sequence