Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02407

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02405 and BACOVA_02406 are separated by 101 nucleotidesBACOVA_02406 and BACOVA_02407 are separated by 33 nucleotidesBACOVA_02407 and BACOVA_02408 are separated by 24 nucleotidesBACOVA_02408 and BACOVA_02409 are separated by 97 nucleotides BACOVA_02405: BACOVA_02405 - hypothetical protein, at 172,530 to 174,047 _02405 BACOVA_02406: BACOVA_02406 - chloramphenicol O-acetyltransferase, at 174,149 to 174,772 _02406 BACOVA_02407: BACOVA_02407 - hypothetical protein, at 174,806 to 176,200 _02407 BACOVA_02408: BACOVA_02408 - cyclic nucleotide-binding domain protein, at 176,225 to 176,788 _02408 BACOVA_02409: BACOVA_02409 - acyltransferase, at 176,886 to 178,037 _02409 Position (kb) 174 175 176 177Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 173.831 kb on + strand, within BACOVA_02405at 173.831 kb on + strand, within BACOVA_02405at 173.831 kb on + strand, within BACOVA_02405at 173.832 kb on - strand, within BACOVA_02405at 173.840 kb on + strand, within BACOVA_02405at 173.841 kb on - strand, within BACOVA_02405at 173.859 kb on + strand, within BACOVA_02405at 173.859 kb on + strand, within BACOVA_02405at 173.860 kb on - strand, within BACOVA_02405at 173.863 kb on + strand, within BACOVA_02405at 174.060 kb on + strandat 174.093 kb on - strandat 174.145 kb on + strandat 174.146 kb on - strandat 174.203 kb on + strandat 174.203 kb on + strandat 174.256 kb on - strand, within BACOVA_02406at 174.312 kb on + strand, within BACOVA_02406at 174.379 kb on + strand, within BACOVA_02406at 174.392 kb on + strand, within BACOVA_02406at 174.437 kb on - strand, within BACOVA_02406at 174.735 kb on - strandat 174.752 kb on - strandat 174.770 kb on + strandat 174.800 kb on + strandat 174.803 kb on + strandat 174.804 kb on - strandat 174.804 kb on - strandat 174.805 kb on + strandat 174.805 kb on + strandat 174.805 kb on + strandat 174.806 kb on - strandat 174.806 kb on - strandat 174.806 kb on - strandat 174.806 kb on - strandat 174.813 kb on + strandat 174.814 kb on - strandat 174.820 kb on - strandat 174.934 kb on - strandat 175.044 kb on + strand, within BACOVA_02407at 175.045 kb on - strand, within BACOVA_02407at 175.069 kb on - strand, within BACOVA_02407at 175.103 kb on + strand, within BACOVA_02407at 175.404 kb on - strand, within BACOVA_02407at 175.476 kb on - strand, within BACOVA_02407at 175.604 kb on + strand, within BACOVA_02407at 175.727 kb on + strand, within BACOVA_02407at 175.727 kb on + strand, within BACOVA_02407at 175.728 kb on - strand, within BACOVA_02407at 175.728 kb on - strand, within BACOVA_02407at 175.796 kb on + strand, within BACOVA_02407at 175.809 kb on - strand, within BACOVA_02407at 175.809 kb on - strand, within BACOVA_02407at 175.845 kb on - strand, within BACOVA_02407at 175.852 kb on + strand, within BACOVA_02407at 175.865 kb on + strand, within BACOVA_02407at 175.866 kb on - strand, within BACOVA_02407at 175.889 kb on + strand, within BACOVA_02407at 176.055 kb on - strand, within BACOVA_02407at 176.112 kb on - strandat 176.141 kb on + strandat 176.173 kb on + strandat 176.176 kb on + strandat 176.177 kb on - strandat 176.180 kb on + strandat 176.186 kb on - strandat 176.190 kb on + strandat 176.209 kb on - strandat 176.242 kb on + strandat 176.243 kb on - strandat 176.258 kb on + strandat 176.307 kb on + strand, within BACOVA_02408at 176.308 kb on - strand, within BACOVA_02408at 176.312 kb on + strand, within BACOVA_02408at 176.312 kb on + strand, within BACOVA_02408at 176.312 kb on + strand, within BACOVA_02408at 176.313 kb on - strand, within BACOVA_02408at 176.313 kb on - strand, within BACOVA_02408at 176.327 kb on - strand, within BACOVA_02408at 176.366 kb on + strand, within BACOVA_02408at 176.366 kb on + strand, within BACOVA_02408at 176.397 kb on + strand, within BACOVA_02408at 176.398 kb on - strand, within BACOVA_02408at 176.425 kb on + strand, within BACOVA_02408at 176.425 kb on + strand, within BACOVA_02408at 176.528 kb on + strand, within BACOVA_02408at 176.531 kb on + strand, within BACOVA_02408at 176.571 kb on - strand, within BACOVA_02408at 176.572 kb on + strand, within BACOVA_02408at 176.573 kb on - strand, within BACOVA_02408at 176.580 kb on + strand, within BACOVA_02408at 176.627 kb on - strand, within BACOVA_02408at 176.627 kb on - strand, within BACOVA_02408at 176.673 kb on - strand, within BACOVA_02408at 176.707 kb on - strand, within BACOVA_02408at 176.773 kb on - strandat 176.794 kb on - strandat 176.869 kb on + strandat 176.875 kb on + strandat 176.969 kb on + strandat 176.970 kb on - strandat 177.017 kb on + strand, within BACOVA_02409at 177.023 kb on + strand, within BACOVA_02409at 177.049 kb on + strand, within BACOVA_02409at 177.100 kb on - strand, within BACOVA_02409at 177.157 kb on + strand, within BACOVA_02409at 177.200 kb on + strand, within BACOVA_02409

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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173,831 + BACOVA_02405 0.86 -1.0
173,831 + BACOVA_02405 0.86 -1.5
173,831 + BACOVA_02405 0.86 -0.4
173,832 - BACOVA_02405 0.86 +1.7
173,840 + BACOVA_02405 0.86 -1.2
173,841 - BACOVA_02405 0.86 +1.4
173,859 + BACOVA_02405 0.88 -0.6
173,859 + BACOVA_02405 0.88 -1.3
173,860 - BACOVA_02405 0.88 -0.1
173,863 + BACOVA_02405 0.88 -1.6
174,060 + -0.8
174,093 - +1.5
174,145 + +1.0
174,146 - -0.5
174,203 + -0.8
174,203 + +1.0
174,256 - BACOVA_02406 0.17 +0.7
174,312 + BACOVA_02406 0.26 -3.0
174,379 + BACOVA_02406 0.37 -3.9
174,392 + BACOVA_02406 0.39 +1.4
174,437 - BACOVA_02406 0.46 -0.3
174,735 - -1.8
174,752 - +0.4
174,770 + +0.5
174,800 + +0.4
174,803 + -2.4
174,804 - -0.5
174,804 - -0.5
174,805 + +1.0
174,805 + -1.9
174,805 + +0.8
174,806 - -0.6
174,806 - +1.8
174,806 - +2.9
174,806 - +0.0
174,813 + +1.4
174,814 - -0.3
174,820 - -0.6
174,934 - -1.6
175,044 + BACOVA_02407 0.17 +0.6
175,045 - BACOVA_02407 0.17 -1.0
175,069 - BACOVA_02407 0.19 +2.0
175,103 + BACOVA_02407 0.21 -0.8
175,404 - BACOVA_02407 0.43 +0.4
175,476 - BACOVA_02407 0.48 -2.0
175,604 + BACOVA_02407 0.57 -2.1
175,727 + BACOVA_02407 0.66 +1.2
175,727 + BACOVA_02407 0.66 -0.3
175,728 - BACOVA_02407 0.66 -0.4
175,728 - BACOVA_02407 0.66 +1.4
175,796 + BACOVA_02407 0.71 +0.0
175,809 - BACOVA_02407 0.72 +2.2
175,809 - BACOVA_02407 0.72 -0.8
175,845 - BACOVA_02407 0.74 +0.8
175,852 + BACOVA_02407 0.75 +3.5
175,865 + BACOVA_02407 0.76 -0.5
175,866 - BACOVA_02407 0.76 +1.7
175,889 + BACOVA_02407 0.78 -0.8
176,055 - BACOVA_02407 0.90 +0.8
176,112 - -0.4
176,141 + -1.0
176,173 + -0.8
176,176 + -1.0
176,177 - -1.4
176,180 + -0.8
176,186 - -0.4
176,190 + -0.8
176,209 - -0.6
176,242 + -0.0
176,243 - -1.0
176,258 + -2.4
176,307 + BACOVA_02408 0.15 -0.3
176,308 - BACOVA_02408 0.15 -1.0
176,312 + BACOVA_02408 0.15 -0.6
176,312 + BACOVA_02408 0.15 -2.8
176,312 + BACOVA_02408 0.15 -0.4
176,313 - BACOVA_02408 0.16 +0.3
176,313 - BACOVA_02408 0.16 -1.9
176,327 - BACOVA_02408 0.18 -0.1
176,366 + BACOVA_02408 0.25 +4.3
176,366 + BACOVA_02408 0.25 -2.5
176,397 + BACOVA_02408 0.30 +1.0
176,398 - BACOVA_02408 0.31 -1.4
176,425 + BACOVA_02408 0.35 -0.8
176,425 + BACOVA_02408 0.35 +2.0
176,528 + BACOVA_02408 0.54 +1.5
176,531 + BACOVA_02408 0.54 +1.4
176,571 - BACOVA_02408 0.61 -2.6
176,572 + BACOVA_02408 0.62 -1.8
176,573 - BACOVA_02408 0.62 +0.2
176,580 + BACOVA_02408 0.63 +1.0
176,627 - BACOVA_02408 0.71 +0.7
176,627 - BACOVA_02408 0.71 +0.5
176,673 - BACOVA_02408 0.79 +1.4
176,707 - BACOVA_02408 0.85 -0.2
176,773 - -2.4
176,794 - +1.0
176,869 + +1.6
176,875 + -0.6
176,969 + +2.1
176,970 - -1.1
177,017 + BACOVA_02409 0.11 -1.3
177,023 + BACOVA_02409 0.12 -0.1
177,049 + BACOVA_02409 0.14 +0.3
177,100 - BACOVA_02409 0.19 +1.5
177,157 + BACOVA_02409 0.24 -0.5
177,200 + BACOVA_02409 0.27 -1.6

Or see this region's nucleotide sequence