Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02067 and BACOVA_02068 are separated by 84 nucleotides BACOVA_02068 and BACOVA_02069 are separated by 177 nucleotides BACOVA_02069 and BACOVA_02070 are separated by 277 nucleotides BACOVA_02070 and BACOVA_02071 are separated by 310 nucleotides
BACOVA_02067: BACOVA_02067 - alkyl hydroperoxide reductase, F subunit, at 387,029 to 388,579
_02067
BACOVA_02068: BACOVA_02068 - peroxiredoxin, at 388,664 to 389,230
_02068
BACOVA_02069: BACOVA_02069 - hydrolase, NUDIX family, at 389,408 to 389,968
_02069
BACOVA_02070: BACOVA_02070 - hypothetical protein, at 390,246 to 390,413
_02070
BACOVA_02071: BACOVA_02071 - hypothetical protein, at 390,724 to 392,034
_02071
Position (kb) 389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 388.429 kb on + strand at 388.448 kb on + strand at 388.500 kb on - strand at 388.505 kb on + strand at 388.505 kb on + strand at 388.506 kb on - strand at 388.506 kb on - strand at 388.506 kb on - strand at 388.506 kb on - strand at 388.506 kb on - strand at 388.508 kb on - strand at 388.550 kb on + strand at 388.551 kb on - strand at 388.551 kb on - strand at 388.551 kb on - strand at 388.574 kb on + strand at 388.579 kb on + strand at 388.601 kb on + strand at 388.652 kb on + strand at 388.663 kb on - strand at 388.672 kb on + strand at 388.677 kb on - strand at 388.702 kb on + strand at 388.808 kb on - strand, within BACOVA_02068 at 388.813 kb on + strand, within BACOVA_02068 at 388.814 kb on - strand, within BACOVA_02068 at 388.814 kb on - strand, within BACOVA_02068 at 388.864 kb on + strand, within BACOVA_02068 at 388.864 kb on + strand, within BACOVA_02068 at 388.896 kb on + strand, within BACOVA_02068 at 388.896 kb on + strand, within BACOVA_02068 at 388.897 kb on - strand, within BACOVA_02068 at 388.897 kb on - strand, within BACOVA_02068 at 388.897 kb on - strand, within BACOVA_02068 at 388.899 kb on - strand, within BACOVA_02068 at 388.899 kb on - strand, within BACOVA_02068 at 388.899 kb on - strand, within BACOVA_02068 at 389.031 kb on - strand, within BACOVA_02068 at 389.090 kb on + strand, within BACOVA_02068 at 389.091 kb on - strand, within BACOVA_02068 at 389.091 kb on - strand, within BACOVA_02068 at 389.099 kb on - strand, within BACOVA_02068 at 389.118 kb on - strand, within BACOVA_02068 at 389.231 kb on - strand at 389.237 kb on + strand at 389.255 kb on + strand at 389.270 kb on - strand at 389.271 kb on + strand at 389.272 kb on - strand at 389.315 kb on + strand at 389.387 kb on - strand at 389.397 kb on + strand at 389.398 kb on - strand at 389.399 kb on + strand at 389.413 kb on + strand at 389.437 kb on + strand at 389.437 kb on + strand at 389.438 kb on - strand at 389.469 kb on + strand, within BACOVA_02069 at 389.470 kb on - strand, within BACOVA_02069 at 389.506 kb on + strand, within BACOVA_02069 at 389.521 kb on + strand, within BACOVA_02069 at 389.552 kb on + strand, within BACOVA_02069 at 389.578 kb on - strand, within BACOVA_02069 at 389.713 kb on - strand, within BACOVA_02069 at 389.750 kb on + strand, within BACOVA_02069 at 389.751 kb on - strand, within BACOVA_02069 at 389.771 kb on - strand, within BACOVA_02069 at 389.775 kb on - strand, within BACOVA_02069 at 389.780 kb on + strand, within BACOVA_02069 at 389.780 kb on + strand, within BACOVA_02069 at 389.797 kb on - strand, within BACOVA_02069 at 389.800 kb on + strand, within BACOVA_02069 at 389.800 kb on + strand, within BACOVA_02069 at 389.866 kb on - strand, within BACOVA_02069 at 389.883 kb on + strand, within BACOVA_02069 at 389.883 kb on + strand, within BACOVA_02069 at 389.941 kb on + strand at 389.971 kb on + strand at 389.971 kb on + strand at 389.971 kb on + strand at 389.971 kb on + strand at 390.000 kb on - strand at 390.008 kb on + strand at 390.010 kb on + strand at 390.011 kb on - strand at 390.027 kb on + strand at 390.033 kb on - strand at 390.033 kb on - strand at 390.085 kb on - strand at 390.085 kb on - strand at 390.117 kb on + strand at 390.118 kb on - strand at 390.127 kb on + strand at 390.127 kb on + strand at 390.289 kb on - strand, within BACOVA_02070 at 390.303 kb on - strand, within BACOVA_02070 at 390.338 kb on + strand, within BACOVA_02070 at 390.411 kb on + strand at 390.412 kb on - strand at 390.459 kb on - strand at 390.506 kb on - strand at 390.550 kb on + strand at 390.604 kb on + strand at 390.623 kb on + strand at 390.624 kb on - strand at 390.626 kb on - strand at 390.654 kb on - strand at 390.715 kb on - strand at 390.721 kb on - strand at 390.721 kb on - strand at 390.763 kb on + strand at 390.802 kb on - strand at 390.806 kb on + strand at 390.806 kb on + strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.843 kb on - strand at 390.848 kb on + strand at 390.878 kb on - strand, within BACOVA_02071 at 390.879 kb on + strand, within BACOVA_02071 at 390.879 kb on + strand, within BACOVA_02071 at 390.880 kb on - strand, within BACOVA_02071 at 390.880 kb on - strand, within BACOVA_02071 at 390.880 kb on - strand, within BACOVA_02071 at 390.882 kb on - strand, within BACOVA_02071 at 390.882 kb on - strand, within BACOVA_02071 at 390.922 kb on + strand, within BACOVA_02071 at 390.923 kb on - strand, within BACOVA_02071 at 390.962 kb on - strand, within BACOVA_02071
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 388,429 + +0.6 388,448 + -0.6 388,500 - +2.1 388,505 + +3.1 388,505 + -1.0 388,506 - +0.1 388,506 - -0.9 388,506 - +1.0 388,506 - +0.2 388,506 - -1.0 388,508 - +1.2 388,550 + -0.7 388,551 - +0.1 388,551 - -0.6 388,551 - -0.3 388,574 + +0.5 388,579 + -1.0 388,601 + +2.6 388,652 + -0.2 388,663 - -1.2 388,672 + +1.9 388,677 - +0.4 388,702 + -3.3 388,808 - BACOVA_02068 0.25 +0.7 388,813 + BACOVA_02068 0.26 -1.7 388,814 - BACOVA_02068 0.26 +0.2 388,814 - BACOVA_02068 0.26 +0.1 388,864 + BACOVA_02068 0.35 -1.6 388,864 + BACOVA_02068 0.35 -1.3 388,896 + BACOVA_02068 0.41 +0.0 388,896 + BACOVA_02068 0.41 +1.2 388,897 - BACOVA_02068 0.41 -2.7 388,897 - BACOVA_02068 0.41 -0.9 388,897 - BACOVA_02068 0.41 -0.5 388,899 - BACOVA_02068 0.41 +1.3 388,899 - BACOVA_02068 0.41 -0.6 388,899 - BACOVA_02068 0.41 +0.8 389,031 - BACOVA_02068 0.65 -0.4 389,090 + BACOVA_02068 0.75 -2.6 389,091 - BACOVA_02068 0.75 -1.7 389,091 - BACOVA_02068 0.75 +1.2 389,099 - BACOVA_02068 0.77 -0.2 389,118 - BACOVA_02068 0.80 +0.6 389,231 - -1.3 389,237 + -1.3 389,255 + +0.7 389,270 - -2.5 389,271 + -0.4 389,272 - +0.6 389,315 + +0.9 389,387 - +0.3 389,397 + +1.1 389,398 - -0.7 389,399 + +1.1 389,413 + -0.2 389,437 + +0.0 389,437 + +3.0 389,438 - -0.4 389,469 + BACOVA_02069 0.11 -1.9 389,470 - BACOVA_02069 0.11 -0.7 389,506 + BACOVA_02069 0.17 +0.8 389,521 + BACOVA_02069 0.20 -0.1 389,552 + BACOVA_02069 0.26 -0.8 389,578 - BACOVA_02069 0.30 +0.5 389,713 - BACOVA_02069 0.54 -0.3 389,750 + BACOVA_02069 0.61 +2.5 389,751 - BACOVA_02069 0.61 +1.5 389,771 - BACOVA_02069 0.65 +1.2 389,775 - BACOVA_02069 0.65 -0.3 389,780 + BACOVA_02069 0.66 +0.1 389,780 + BACOVA_02069 0.66 -0.9 389,797 - BACOVA_02069 0.69 -0.1 389,800 + BACOVA_02069 0.70 -0.5 389,800 + BACOVA_02069 0.70 +1.4 389,866 - BACOVA_02069 0.82 +3.5 389,883 + BACOVA_02069 0.85 +0.1 389,883 + BACOVA_02069 0.85 +2.3 389,941 + +2.0 389,971 + -2.9 389,971 + -1.1 389,971 + -2.1 389,971 + +1.0 390,000 - +1.4 390,008 + +1.7 390,010 + -0.2 390,011 - +0.6 390,027 + +0.9 390,033 - -1.7 390,033 - -0.3 390,085 - +0.3 390,085 - -0.5 390,117 + -3.2 390,118 - -0.6 390,127 + +0.4 390,127 + -3.6 390,289 - BACOVA_02070 0.26 +0.7 390,303 - BACOVA_02070 0.34 -0.2 390,338 + BACOVA_02070 0.55 -1.3 390,411 + +2.4 390,412 - -1.7 390,459 - -0.4 390,506 - -1.6 390,550 + -0.5 390,604 + +0.4 390,623 + -2.7 390,624 - +0.5 390,626 - -2.0 390,654 - +2.4 390,715 - -0.4 390,721 - +1.6 390,721 - -3.2 390,763 + -0.2 390,802 - -0.9 390,806 + -1.3 390,806 + -0.0 390,807 - +0.1 390,807 - -1.6 390,843 - -1.6 390,848 + -1.8 390,878 - BACOVA_02071 0.12 -1.9 390,879 + BACOVA_02071 0.12 -1.7 390,879 + BACOVA_02071 0.12 -2.4 390,880 - BACOVA_02071 0.12 -0.2 390,880 - BACOVA_02071 0.12 +0.8 390,880 - BACOVA_02071 0.12 +0.1 390,882 - BACOVA_02071 0.12 +0.0 390,882 - BACOVA_02071 0.12 +1.0 390,922 + BACOVA_02071 0.15 +2.3 390,923 - BACOVA_02071 0.15 -0.2 390,962 - BACOVA_02071 0.18 -1.2
Or see this region's nucleotide sequence