Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02029 and BACOVA_02030 are separated by 346 nucleotides BACOVA_02030 and BACOVA_02031 are separated by 30 nucleotides BACOVA_02031 and BACOVA_02032 are separated by 7 nucleotides
BACOVA_02029: BACOVA_02029 - hypothetical protein, at 333,174 to 333,371
_02029
BACOVA_02030: BACOVA_02030 - comF family protein, at 333,718 to 334,422
_02030
BACOVA_02031: BACOVA_02031 - inositol monophosphatase family protein, at 334,453 to 335,256
_02031
BACOVA_02032: BACOVA_02032 - hypothetical protein, at 335,264 to 335,404
_02032
Position (kb) 333
334
335 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 332.729 kb on - strand at 332.754 kb on - strand at 332.766 kb on - strand at 332.783 kb on - strand at 332.786 kb on - strand at 332.824 kb on - strand at 332.824 kb on - strand at 332.903 kb on - strand at 332.954 kb on - strand at 332.954 kb on - strand at 332.954 kb on - strand at 332.957 kb on + strand at 332.963 kb on + strand at 332.963 kb on + strand at 332.964 kb on - strand at 332.964 kb on - strand at 332.986 kb on + strand at 333.025 kb on + strand at 333.036 kb on + strand at 333.042 kb on + strand at 333.109 kb on - strand at 333.152 kb on + strand at 333.190 kb on - strand at 333.198 kb on - strand, within BACOVA_02029 at 333.222 kb on + strand, within BACOVA_02029 at 333.223 kb on - strand, within BACOVA_02029 at 333.223 kb on - strand, within BACOVA_02029 at 333.224 kb on + strand, within BACOVA_02029 at 333.226 kb on + strand, within BACOVA_02029 at 333.246 kb on + strand, within BACOVA_02029 at 333.251 kb on + strand, within BACOVA_02029 at 333.252 kb on - strand, within BACOVA_02029 at 333.284 kb on - strand, within BACOVA_02029 at 333.400 kb on + strand at 333.400 kb on + strand at 333.400 kb on + strand at 333.400 kb on + strand at 333.400 kb on + strand at 333.401 kb on - strand at 333.409 kb on + strand at 333.409 kb on + strand at 333.410 kb on - strand at 333.410 kb on - strand at 333.411 kb on + strand at 333.413 kb on + strand at 333.414 kb on - strand at 333.414 kb on - strand at 333.443 kb on - strand at 333.469 kb on + strand at 333.470 kb on - strand at 333.517 kb on - strand at 333.572 kb on - strand at 333.626 kb on + strand at 333.627 kb on - strand at 333.627 kb on - strand at 333.636 kb on + strand at 333.673 kb on - strand at 333.698 kb on + strand at 333.699 kb on - strand at 333.701 kb on - strand at 333.739 kb on + strand at 333.741 kb on + strand at 333.741 kb on + strand at 333.742 kb on - strand at 333.745 kb on - strand at 333.745 kb on - strand at 333.795 kb on + strand, within BACOVA_02030 at 333.824 kb on - strand, within BACOVA_02030 at 333.824 kb on - strand, within BACOVA_02030 at 333.829 kb on + strand, within BACOVA_02030 at 333.830 kb on - strand, within BACOVA_02030 at 333.830 kb on - strand, within BACOVA_02030 at 333.830 kb on - strand, within BACOVA_02030 at 333.830 kb on - strand, within BACOVA_02030 at 333.874 kb on - strand, within BACOVA_02030 at 333.874 kb on - strand, within BACOVA_02030 at 333.886 kb on - strand, within BACOVA_02030 at 333.940 kb on + strand, within BACOVA_02030 at 333.954 kb on + strand, within BACOVA_02030 at 333.973 kb on + strand, within BACOVA_02030 at 334.011 kb on + strand, within BACOVA_02030 at 334.012 kb on - strand, within BACOVA_02030 at 334.012 kb on - strand, within BACOVA_02030 at 334.107 kb on + strand, within BACOVA_02030 at 334.110 kb on - strand, within BACOVA_02030 at 334.129 kb on + strand, within BACOVA_02030 at 334.129 kb on + strand, within BACOVA_02030 at 334.130 kb on - strand, within BACOVA_02030 at 334.130 kb on - strand, within BACOVA_02030 at 334.148 kb on + strand, within BACOVA_02030 at 334.257 kb on + strand, within BACOVA_02030 at 334.275 kb on - strand, within BACOVA_02030 at 334.297 kb on - strand, within BACOVA_02030 at 334.297 kb on - strand, within BACOVA_02030 at 334.299 kb on + strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.308 kb on + strand, within BACOVA_02030 at 334.314 kb on + strand, within BACOVA_02030 at 334.315 kb on - strand, within BACOVA_02030 at 334.315 kb on - strand, within BACOVA_02030 at 334.334 kb on - strand, within BACOVA_02030 at 334.378 kb on + strand at 334.379 kb on - strand at 334.379 kb on - strand at 334.389 kb on + strand at 334.389 kb on + strand at 334.390 kb on - strand at 334.390 kb on - strand at 334.422 kb on + strand at 334.425 kb on + strand at 334.426 kb on - strand at 334.428 kb on + strand at 334.429 kb on - strand at 334.443 kb on - strand at 334.448 kb on - strand at 334.454 kb on + strand at 334.454 kb on + strand at 334.458 kb on + strand at 334.527 kb on + strand at 334.528 kb on - strand at 334.528 kb on - strand at 334.528 kb on - strand at 334.670 kb on + strand, within BACOVA_02031 at 334.671 kb on - strand, within BACOVA_02031 at 334.708 kb on - strand, within BACOVA_02031 at 334.725 kb on - strand, within BACOVA_02031 at 334.760 kb on + strand, within BACOVA_02031 at 334.775 kb on + strand, within BACOVA_02031 at 334.882 kb on + strand, within BACOVA_02031 at 334.901 kb on + strand, within BACOVA_02031 at 334.901 kb on + strand, within BACOVA_02031 at 334.936 kb on + strand, within BACOVA_02031 at 334.937 kb on - strand, within BACOVA_02031 at 334.975 kb on - strand, within BACOVA_02031 at 334.975 kb on - strand, within BACOVA_02031 at 334.976 kb on + strand, within BACOVA_02031 at 334.976 kb on + strand, within BACOVA_02031 at 334.977 kb on - strand, within BACOVA_02031 at 335.015 kb on + strand, within BACOVA_02031 at 335.030 kb on + strand, within BACOVA_02031 at 335.083 kb on - strand, within BACOVA_02031 at 335.083 kb on - strand, within BACOVA_02031 at 335.124 kb on - strand, within BACOVA_02031 at 335.124 kb on - strand, within BACOVA_02031 at 335.132 kb on + strand, within BACOVA_02031 at 335.132 kb on + strand, within BACOVA_02031 at 335.133 kb on - strand, within BACOVA_02031 at 335.133 kb on - strand, within BACOVA_02031 at 335.224 kb on + strand at 335.235 kb on + strand at 335.235 kb on + strand at 335.236 kb on - strand at 335.259 kb on - strand at 335.356 kb on + strand, within BACOVA_02032 at 335.380 kb on + strand, within BACOVA_02032 at 335.380 kb on + strand, within BACOVA_02032 at 335.381 kb on - strand, within BACOVA_02032 at 335.381 kb on - strand, within BACOVA_02032 at 335.384 kb on + strand, within BACOVA_02032 at 335.385 kb on + strand, within BACOVA_02032 at 335.396 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 332,729 - -0.9 332,754 - +1.1 332,766 - -0.5 332,783 - +0.9 332,786 - -1.3 332,824 - +0.8 332,824 - +0.6 332,903 - +0.7 332,954 - -0.7 332,954 - +1.6 332,954 - -0.8 332,957 + +1.2 332,963 + -0.2 332,963 + -0.6 332,964 - +1.1 332,964 - +0.9 332,986 + -0.9 333,025 + +1.3 333,036 + -0.5 333,042 + -0.7 333,109 - -2.8 333,152 + +0.2 333,190 - -0.5 333,198 - BACOVA_02029 0.12 -1.3 333,222 + BACOVA_02029 0.24 +1.2 333,223 - BACOVA_02029 0.25 -4.7 333,223 - BACOVA_02029 0.25 +0.2 333,224 + BACOVA_02029 0.25 -0.2 333,226 + BACOVA_02029 0.26 -1.4 333,246 + BACOVA_02029 0.36 -1.5 333,251 + BACOVA_02029 0.39 -1.2 333,252 - BACOVA_02029 0.39 +0.4 333,284 - BACOVA_02029 0.56 +1.0 333,400 + -0.1 333,400 + +0.6 333,400 + +1.5 333,400 + +1.7 333,400 + -2.5 333,401 - +1.0 333,409 + +1.0 333,409 + +0.9 333,410 - -2.0 333,410 - -0.2 333,411 + +0.7 333,413 + -0.3 333,414 - -1.1 333,414 - -1.5 333,443 - -3.6 333,469 + -1.4 333,470 - -0.5 333,517 - -1.3 333,572 - +3.1 333,626 + -0.9 333,627 - +0.2 333,627 - -1.2 333,636 + -0.4 333,673 - +1.3 333,698 + -0.3 333,699 - -1.2 333,701 - +1.4 333,739 + +1.1 333,741 + +0.7 333,741 + -0.5 333,742 - +0.5 333,745 - -1.6 333,745 - +0.3 333,795 + BACOVA_02030 0.11 +0.8 333,824 - BACOVA_02030 0.15 -1.9 333,824 - BACOVA_02030 0.15 -0.4 333,829 + BACOVA_02030 0.16 +0.7 333,830 - BACOVA_02030 0.16 -1.4 333,830 - BACOVA_02030 0.16 -0.4 333,830 - BACOVA_02030 0.16 -0.3 333,830 - BACOVA_02030 0.16 +1.6 333,874 - BACOVA_02030 0.22 -0.6 333,874 - BACOVA_02030 0.22 -1.6 333,886 - BACOVA_02030 0.24 -0.5 333,940 + BACOVA_02030 0.31 +1.6 333,954 + BACOVA_02030 0.33 +1.2 333,973 + BACOVA_02030 0.36 -0.0 334,011 + BACOVA_02030 0.42 -0.0 334,012 - BACOVA_02030 0.42 -0.8 334,012 - BACOVA_02030 0.42 -0.5 334,107 + BACOVA_02030 0.55 -0.0 334,110 - BACOVA_02030 0.56 +0.4 334,129 + BACOVA_02030 0.58 +0.7 334,129 + BACOVA_02030 0.58 -1.9 334,130 - BACOVA_02030 0.58 -0.5 334,130 - BACOVA_02030 0.58 +0.2 334,148 + BACOVA_02030 0.61 +1.1 334,257 + BACOVA_02030 0.76 -0.0 334,275 - BACOVA_02030 0.79 -0.2 334,297 - BACOVA_02030 0.82 +0.9 334,297 - BACOVA_02030 0.82 +0.2 334,299 + BACOVA_02030 0.82 -0.4 334,300 - BACOVA_02030 0.83 -0.1 334,300 - BACOVA_02030 0.83 -0.2 334,300 - BACOVA_02030 0.83 -1.8 334,300 - BACOVA_02030 0.83 -0.2 334,300 - BACOVA_02030 0.83 +0.8 334,308 + BACOVA_02030 0.84 -2.6 334,314 + BACOVA_02030 0.85 +0.5 334,315 - BACOVA_02030 0.85 +1.2 334,315 - BACOVA_02030 0.85 -1.8 334,334 - BACOVA_02030 0.87 +0.7 334,378 + +0.2 334,379 - +0.3 334,379 - -0.2 334,389 + +0.8 334,389 + +0.2 334,390 - -0.5 334,390 - -0.3 334,422 + +1.7 334,425 + -1.2 334,426 - +0.4 334,428 + -0.2 334,429 - -0.4 334,443 - +3.2 334,448 - -0.2 334,454 + -0.1 334,454 + -1.1 334,458 + -0.8 334,527 + -0.8 334,528 - -0.0 334,528 - +0.7 334,528 - +0.8 334,670 + BACOVA_02031 0.27 -1.6 334,671 - BACOVA_02031 0.27 -4.3 334,708 - BACOVA_02031 0.32 +2.1 334,725 - BACOVA_02031 0.34 -0.9 334,760 + BACOVA_02031 0.38 -0.0 334,775 + BACOVA_02031 0.40 -0.2 334,882 + BACOVA_02031 0.53 -1.2 334,901 + BACOVA_02031 0.56 +0.3 334,901 + BACOVA_02031 0.56 -0.0 334,936 + BACOVA_02031 0.60 +0.2 334,937 - BACOVA_02031 0.60 +0.3 334,975 - BACOVA_02031 0.65 +0.5 334,975 - BACOVA_02031 0.65 +0.6 334,976 + BACOVA_02031 0.65 +0.3 334,976 + BACOVA_02031 0.65 +2.7 334,977 - BACOVA_02031 0.65 -0.5 335,015 + BACOVA_02031 0.70 -2.1 335,030 + BACOVA_02031 0.72 +0.9 335,083 - BACOVA_02031 0.78 +0.8 335,083 - BACOVA_02031 0.78 -1.4 335,124 - BACOVA_02031 0.83 +1.2 335,124 - BACOVA_02031 0.83 +1.8 335,132 + BACOVA_02031 0.84 +2.0 335,132 + BACOVA_02031 0.84 +0.7 335,133 - BACOVA_02031 0.85 +0.1 335,133 - BACOVA_02031 0.85 -2.9 335,224 + +0.9 335,235 + -0.2 335,235 + -0.5 335,236 - -0.1 335,259 - +2.6 335,356 + BACOVA_02032 0.65 -0.7 335,380 + BACOVA_02032 0.82 -0.5 335,380 + BACOVA_02032 0.82 +0.9 335,381 - BACOVA_02032 0.83 -0.6 335,381 - BACOVA_02032 0.83 -0.1 335,384 + BACOVA_02032 0.85 -0.2 335,385 + BACOVA_02032 0.86 +0.0 335,396 + +1.6
Or see this region's nucleotide sequence