Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01324 and BACOVA_01325 are separated by 181 nucleotides BACOVA_01325 and BACOVA_01326 overlap by 23 nucleotides BACOVA_01326 and BACOVA_01328 are separated by 25 nucleotides
BACOVA_01324: BACOVA_01324 - hypothetical protein, at 129,775 to 132,519
_01324
BACOVA_01325: BACOVA_01325 - hypothetical protein, at 132,701 to 133,483
_01325
BACOVA_01326: BACOVA_01326 - hypothetical protein, at 133,461 to 133,844
_01326
BACOVA_01328: BACOVA_01328 - hypothetical protein, at 133,870 to 135,486
_01328
Position (kb) 132
133
134 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 131.770 kb on + strand, within BACOVA_01324 at 131.788 kb on - strand, within BACOVA_01324 at 131.829 kb on + strand, within BACOVA_01324 at 131.829 kb on + strand, within BACOVA_01324 at 131.843 kb on - strand, within BACOVA_01324 at 131.851 kb on - strand, within BACOVA_01324 at 131.867 kb on + strand, within BACOVA_01324 at 131.867 kb on + strand, within BACOVA_01324 at 131.868 kb on - strand, within BACOVA_01324 at 131.868 kb on - strand, within BACOVA_01324 at 131.871 kb on + strand, within BACOVA_01324 at 131.872 kb on - strand, within BACOVA_01324 at 131.872 kb on - strand, within BACOVA_01324 at 131.917 kb on + strand, within BACOVA_01324 at 131.936 kb on + strand, within BACOVA_01324 at 131.936 kb on + strand, within BACOVA_01324 at 132.000 kb on - strand, within BACOVA_01324 at 132.002 kb on - strand, within BACOVA_01324 at 132.003 kb on + strand, within BACOVA_01324 at 132.004 kb on - strand, within BACOVA_01324 at 132.024 kb on + strand, within BACOVA_01324 at 132.024 kb on + strand, within BACOVA_01324 at 132.024 kb on + strand, within BACOVA_01324 at 132.033 kb on + strand, within BACOVA_01324 at 132.033 kb on + strand, within BACOVA_01324 at 132.081 kb on + strand, within BACOVA_01324 at 132.094 kb on - strand, within BACOVA_01324 at 132.099 kb on - strand, within BACOVA_01324 at 132.160 kb on + strand, within BACOVA_01324 at 132.161 kb on - strand, within BACOVA_01324 at 132.184 kb on + strand, within BACOVA_01324 at 132.196 kb on - strand, within BACOVA_01324 at 132.196 kb on - strand, within BACOVA_01324 at 132.201 kb on + strand, within BACOVA_01324 at 132.212 kb on + strand, within BACOVA_01324 at 132.213 kb on - strand, within BACOVA_01324 at 132.231 kb on + strand, within BACOVA_01324 at 132.246 kb on + strand at 132.276 kb on + strand at 132.293 kb on - strand at 132.367 kb on + strand at 132.393 kb on + strand at 132.396 kb on + strand at 132.421 kb on + strand at 132.422 kb on - strand at 132.423 kb on + strand at 132.423 kb on + strand at 132.424 kb on - strand at 132.424 kb on - strand at 132.426 kb on + strand at 132.427 kb on - strand at 132.439 kb on - strand at 132.468 kb on + strand at 132.469 kb on - strand at 132.469 kb on - strand at 132.477 kb on + strand at 132.477 kb on + strand at 132.490 kb on + strand at 132.490 kb on + strand at 132.490 kb on + strand at 132.491 kb on - strand at 132.491 kb on - strand at 132.497 kb on - strand at 132.520 kb on - strand at 132.558 kb on + strand at 132.558 kb on + strand at 132.559 kb on - strand at 132.596 kb on - strand at 132.627 kb on + strand at 132.646 kb on + strand at 132.649 kb on + strand at 132.667 kb on + strand at 132.673 kb on + strand at 132.699 kb on - strand at 132.708 kb on + strand at 132.725 kb on - strand at 132.733 kb on + strand at 132.733 kb on + strand at 132.797 kb on + strand, within BACOVA_01325 at 132.797 kb on + strand, within BACOVA_01325 at 132.798 kb on - strand, within BACOVA_01325 at 132.798 kb on - strand, within BACOVA_01325 at 132.801 kb on + strand, within BACOVA_01325 at 132.802 kb on - strand, within BACOVA_01325 at 132.963 kb on + strand, within BACOVA_01325 at 132.964 kb on - strand, within BACOVA_01325 at 133.032 kb on + strand, within BACOVA_01325 at 133.044 kb on + strand, within BACOVA_01325 at 133.069 kb on - strand, within BACOVA_01325 at 133.071 kb on + strand, within BACOVA_01325 at 133.072 kb on - strand, within BACOVA_01325 at 133.123 kb on + strand, within BACOVA_01325 at 133.124 kb on - strand, within BACOVA_01325 at 133.131 kb on + strand, within BACOVA_01325 at 133.146 kb on + strand, within BACOVA_01325 at 133.175 kb on + strand, within BACOVA_01325 at 133.227 kb on + strand, within BACOVA_01325 at 133.233 kb on + strand, within BACOVA_01325 at 133.245 kb on + strand, within BACOVA_01325 at 133.246 kb on - strand, within BACOVA_01325 at 133.246 kb on - strand, within BACOVA_01325 at 133.278 kb on + strand, within BACOVA_01325 at 133.283 kb on - strand, within BACOVA_01325 at 133.300 kb on - strand, within BACOVA_01325 at 133.402 kb on + strand, within BACOVA_01325 at 133.402 kb on + strand, within BACOVA_01325 at 133.477 kb on + strand at 133.477 kb on + strand at 133.478 kb on - strand at 133.478 kb on - strand at 133.479 kb on + strand at 133.479 kb on + strand at 133.480 kb on - strand at 133.485 kb on + strand at 133.569 kb on + strand, within BACOVA_01326 at 133.569 kb on + strand, within BACOVA_01326 at 133.585 kb on - strand, within BACOVA_01326 at 133.634 kb on + strand, within BACOVA_01326 at 133.634 kb on + strand, within BACOVA_01326 at 133.635 kb on - strand, within BACOVA_01326 at 133.672 kb on + strand, within BACOVA_01326 at 133.672 kb on + strand, within BACOVA_01326 at 133.672 kb on + strand, within BACOVA_01326 at 133.673 kb on - strand, within BACOVA_01326 at 133.703 kb on - strand, within BACOVA_01326 at 133.762 kb on + strand, within BACOVA_01326 at 133.763 kb on - strand, within BACOVA_01326 at 133.763 kb on - strand, within BACOVA_01326 at 133.763 kb on - strand, within BACOVA_01326 at 133.794 kb on - strand, within BACOVA_01326 at 133.838 kb on - strand at 133.884 kb on + strand at 133.886 kb on + strand at 133.886 kb on + strand at 134.013 kb on + strand at 134.014 kb on - strand at 134.023 kb on + strand at 134.051 kb on + strand, within BACOVA_01328 at 134.051 kb on + strand, within BACOVA_01328 at 134.051 kb on + strand, within BACOVA_01328 at 134.051 kb on + strand, within BACOVA_01328 at 134.113 kb on + strand, within BACOVA_01328 at 134.113 kb on + strand, within BACOVA_01328 at 134.123 kb on - strand, within BACOVA_01328 at 134.211 kb on + strand, within BACOVA_01328 at 134.211 kb on + strand, within BACOVA_01328 at 134.253 kb on + strand, within BACOVA_01328 at 134.254 kb on - strand, within BACOVA_01328 at 134.259 kb on + strand, within BACOVA_01328 at 134.295 kb on + strand, within BACOVA_01328 at 134.305 kb on - strand, within BACOVA_01328 at 134.305 kb on - strand, within BACOVA_01328 at 134.359 kb on - strand, within BACOVA_01328 at 134.386 kb on + strand, within BACOVA_01328 at 134.387 kb on - strand, within BACOVA_01328 at 134.391 kb on + strand, within BACOVA_01328 at 134.392 kb on - strand, within BACOVA_01328 at 134.392 kb on - strand, within BACOVA_01328 at 134.400 kb on - strand, within BACOVA_01328 at 134.457 kb on + strand, within BACOVA_01328 at 134.457 kb on + strand, within BACOVA_01328 at 134.457 kb on + strand, within BACOVA_01328 at 134.457 kb on + strand, within BACOVA_01328 at 134.461 kb on + strand, within BACOVA_01328 at 134.462 kb on - strand, within BACOVA_01328 at 134.462 kb on - strand, within BACOVA_01328 at 134.462 kb on - strand, within BACOVA_01328
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 131,770 + BACOVA_01324 0.73 -0.5 131,788 - BACOVA_01324 0.73 +0.4 131,829 + BACOVA_01324 0.75 -1.6 131,829 + BACOVA_01324 0.75 +2.9 131,843 - BACOVA_01324 0.75 +1.1 131,851 - BACOVA_01324 0.76 -1.3 131,867 + BACOVA_01324 0.76 -0.7 131,867 + BACOVA_01324 0.76 +1.1 131,868 - BACOVA_01324 0.76 -2.3 131,868 - BACOVA_01324 0.76 -1.3 131,871 + BACOVA_01324 0.76 +0.4 131,872 - BACOVA_01324 0.76 -2.9 131,872 - BACOVA_01324 0.76 +0.4 131,917 + BACOVA_01324 0.78 -0.4 131,936 + BACOVA_01324 0.79 +2.0 131,936 + BACOVA_01324 0.79 +1.2 132,000 - BACOVA_01324 0.81 -3.6 132,002 - BACOVA_01324 0.81 +1.1 132,003 + BACOVA_01324 0.81 -1.5 132,004 - BACOVA_01324 0.81 -2.8 132,024 + BACOVA_01324 0.82 -0.4 132,024 + BACOVA_01324 0.82 +0.1 132,024 + BACOVA_01324 0.82 -0.2 132,033 + BACOVA_01324 0.82 -0.3 132,033 + BACOVA_01324 0.82 +1.2 132,081 + BACOVA_01324 0.84 -0.9 132,094 - BACOVA_01324 0.84 -2.0 132,099 - BACOVA_01324 0.85 -2.3 132,160 + BACOVA_01324 0.87 +0.5 132,161 - BACOVA_01324 0.87 -0.0 132,184 + BACOVA_01324 0.88 -1.3 132,196 - BACOVA_01324 0.88 -0.4 132,196 - BACOVA_01324 0.88 +2.0 132,201 + BACOVA_01324 0.88 +0.1 132,212 + BACOVA_01324 0.89 +0.1 132,213 - BACOVA_01324 0.89 +0.7 132,231 + BACOVA_01324 0.89 -0.2 132,246 + -0.5 132,276 + -0.7 132,293 - +0.9 132,367 + -1.2 132,393 + +1.7 132,396 + -0.8 132,421 + -1.1 132,422 - +1.2 132,423 + -1.2 132,423 + +1.4 132,424 - -2.1 132,424 - +2.0 132,426 + +1.7 132,427 - -3.8 132,439 - +1.8 132,468 + -2.0 132,469 - +0.5 132,469 - -2.3 132,477 + -0.6 132,477 + -2.0 132,490 + -0.4 132,490 + -1.0 132,490 + -1.9 132,491 - -0.0 132,491 - -0.7 132,497 - -0.7 132,520 - +1.0 132,558 + +0.6 132,558 + -2.3 132,559 - -0.9 132,596 - -0.0 132,627 + +0.1 132,646 + +0.7 132,649 + -3.6 132,667 + -1.2 132,673 + +2.0 132,699 - +1.0 132,708 + -2.5 132,725 - +0.7 132,733 + -0.3 132,733 + -3.2 132,797 + BACOVA_01325 0.12 +3.3 132,797 + BACOVA_01325 0.12 -0.3 132,798 - BACOVA_01325 0.12 -0.7 132,798 - BACOVA_01325 0.12 +0.5 132,801 + BACOVA_01325 0.13 +1.8 132,802 - BACOVA_01325 0.13 +1.2 132,963 + BACOVA_01325 0.33 -2.7 132,964 - BACOVA_01325 0.34 +0.8 133,032 + BACOVA_01325 0.42 -0.3 133,044 + BACOVA_01325 0.44 +2.4 133,069 - BACOVA_01325 0.47 -1.2 133,071 + BACOVA_01325 0.47 -0.5 133,072 - BACOVA_01325 0.47 -1.8 133,123 + BACOVA_01325 0.54 +0.3 133,124 - BACOVA_01325 0.54 -0.5 133,131 + BACOVA_01325 0.55 -1.7 133,146 + BACOVA_01325 0.57 +1.5 133,175 + BACOVA_01325 0.61 +0.7 133,227 + BACOVA_01325 0.67 -1.4 133,233 + BACOVA_01325 0.68 +3.1 133,245 + BACOVA_01325 0.69 +0.3 133,246 - BACOVA_01325 0.70 +2.6 133,246 - BACOVA_01325 0.70 -0.3 133,278 + BACOVA_01325 0.74 -1.4 133,283 - BACOVA_01325 0.74 -2.0 133,300 - BACOVA_01325 0.77 -0.7 133,402 + BACOVA_01325 0.90 -0.7 133,402 + BACOVA_01325 0.90 -1.5 133,477 + -2.9 133,477 + +0.4 133,478 - +0.1 133,478 - -0.2 133,479 + -0.9 133,479 + +1.1 133,480 - +0.1 133,485 + -2.3 133,569 + BACOVA_01326 0.28 -0.9 133,569 + BACOVA_01326 0.28 -1.7 133,585 - BACOVA_01326 0.32 -2.6 133,634 + BACOVA_01326 0.45 -0.7 133,634 + BACOVA_01326 0.45 -0.9 133,635 - BACOVA_01326 0.45 -1.6 133,672 + BACOVA_01326 0.55 +1.0 133,672 + BACOVA_01326 0.55 -0.5 133,672 + BACOVA_01326 0.55 +0.7 133,673 - BACOVA_01326 0.55 -2.0 133,703 - BACOVA_01326 0.63 -0.5 133,762 + BACOVA_01326 0.78 -1.0 133,763 - BACOVA_01326 0.79 -0.3 133,763 - BACOVA_01326 0.79 -2.2 133,763 - BACOVA_01326 0.79 +0.9 133,794 - BACOVA_01326 0.87 -2.7 133,838 - -1.0 133,884 + -0.5 133,886 + +1.8 133,886 + -1.2 134,013 + +1.4 134,014 - +0.9 134,023 + -0.9 134,051 + BACOVA_01328 0.11 -0.6 134,051 + BACOVA_01328 0.11 +0.7 134,051 + BACOVA_01328 0.11 +1.7 134,051 + BACOVA_01328 0.11 +1.9 134,113 + BACOVA_01328 0.15 -0.5 134,113 + BACOVA_01328 0.15 -1.2 134,123 - BACOVA_01328 0.16 +1.1 134,211 + BACOVA_01328 0.21 +0.8 134,211 + BACOVA_01328 0.21 -0.0 134,253 + BACOVA_01328 0.24 +0.6 134,254 - BACOVA_01328 0.24 +0.6 134,259 + BACOVA_01328 0.24 -0.9 134,295 + BACOVA_01328 0.26 +0.1 134,305 - BACOVA_01328 0.27 +1.1 134,305 - BACOVA_01328 0.27 -0.5 134,359 - BACOVA_01328 0.30 -2.3 134,386 + BACOVA_01328 0.32 +1.0 134,387 - BACOVA_01328 0.32 -0.0 134,391 + BACOVA_01328 0.32 -0.3 134,392 - BACOVA_01328 0.32 +0.1 134,392 - BACOVA_01328 0.32 -2.4 134,400 - BACOVA_01328 0.33 +0.4 134,457 + BACOVA_01328 0.36 +1.9 134,457 + BACOVA_01328 0.36 +0.2 134,457 + BACOVA_01328 0.36 +1.8 134,457 + BACOVA_01328 0.36 -1.9 134,461 + BACOVA_01328 0.37 +1.0 134,462 - BACOVA_01328 0.37 +0.1 134,462 - BACOVA_01328 0.37 -3.7 134,462 - BACOVA_01328 0.37 -1.7
Or see this region's nucleotide sequence