Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01224 and BACOVA_01225 are separated by 17 nucleotides
BACOVA_01224: BACOVA_01224 - leucine Rich Repeat protein, at 1,454 to 4,108
_01224
BACOVA_01225: BACOVA_01225 - hypothetical protein, at 4,126 to 5,688
_01225
Position (kb) 1
2
3
4
5 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 0.467 kb on + strand at 0.472 kb on + strand at 0.481 kb on + strand at 0.489 kb on + strand at 0.494 kb on - strand at 0.511 kb on - strand at 0.514 kb on + strand at 0.515 kb on - strand at 0.550 kb on + strand at 0.551 kb on - strand at 0.611 kb on - strand at 0.645 kb on + strand at 0.710 kb on - strand at 0.730 kb on + strand at 0.731 kb on - strand at 0.740 kb on + strand at 0.830 kb on + strand at 0.830 kb on + strand at 0.878 kb on - strand at 0.900 kb on + strand at 0.925 kb on + strand at 0.925 kb on + strand at 0.926 kb on - strand at 0.929 kb on - strand at 0.932 kb on - strand at 0.935 kb on - strand at 0.938 kb on - strand at 0.964 kb on - strand at 0.981 kb on - strand at 0.989 kb on - strand at 0.998 kb on + strand at 1.000 kb on + strand at 1.015 kb on + strand at 1.091 kb on + strand at 1.091 kb on + strand at 1.092 kb on - strand at 1.156 kb on + strand at 1.200 kb on - strand at 1.238 kb on + strand at 1.293 kb on - strand at 1.295 kb on - strand at 1.295 kb on - strand at 1.301 kb on + strand at 1.302 kb on - strand at 1.319 kb on - strand at 1.337 kb on - strand at 1.373 kb on - strand at 1.397 kb on + strand at 1.397 kb on + strand at 1.402 kb on - strand at 1.402 kb on - strand at 1.408 kb on + strand at 1.409 kb on - strand at 1.426 kb on - strand at 1.465 kb on - strand at 1.465 kb on - strand at 1.480 kb on + strand at 1.497 kb on + strand at 1.498 kb on - strand at 1.510 kb on - strand at 1.529 kb on - strand at 1.568 kb on - strand at 1.592 kb on - strand at 1.592 kb on - strand at 1.593 kb on + strand at 1.593 kb on + strand at 1.606 kb on + strand at 1.612 kb on + strand at 1.613 kb on - strand at 1.665 kb on - strand at 1.670 kb on + strand at 1.672 kb on + strand at 1.675 kb on + strand at 1.676 kb on - strand at 1.734 kb on + strand, within BACOVA_01224 at 1.734 kb on + strand, within BACOVA_01224 at 1.734 kb on + strand, within BACOVA_01224 at 1.734 kb on + strand, within BACOVA_01224 at 1.734 kb on + strand, within BACOVA_01224 at 1.735 kb on - strand, within BACOVA_01224 at 1.781 kb on - strand, within BACOVA_01224 at 1.797 kb on - strand, within BACOVA_01224 at 1.834 kb on + strand, within BACOVA_01224 at 1.861 kb on + strand, within BACOVA_01224 at 1.912 kb on + strand, within BACOVA_01224 at 1.937 kb on + strand, within BACOVA_01224 at 1.938 kb on - strand, within BACOVA_01224 at 1.958 kb on + strand, within BACOVA_01224 at 2.018 kb on - strand, within BACOVA_01224 at 2.119 kb on + strand, within BACOVA_01224 at 2.125 kb on - strand, within BACOVA_01224 at 2.125 kb on - strand, within BACOVA_01224 at 2.126 kb on + strand, within BACOVA_01224 at 2.127 kb on - strand, within BACOVA_01224 at 2.127 kb on - strand, within BACOVA_01224 at 2.146 kb on + strand, within BACOVA_01224 at 2.146 kb on + strand, within BACOVA_01224 at 2.397 kb on + strand, within BACOVA_01224 at 2.624 kb on - strand, within BACOVA_01224 at 2.637 kb on + strand, within BACOVA_01224 at 2.637 kb on + strand, within BACOVA_01224 at 2.637 kb on + strand, within BACOVA_01224 at 2.638 kb on - strand, within BACOVA_01224 at 2.638 kb on - strand, within BACOVA_01224 at 2.638 kb on - strand, within BACOVA_01224 at 2.638 kb on - strand, within BACOVA_01224 at 2.638 kb on - strand, within BACOVA_01224 at 2.639 kb on + strand, within BACOVA_01224 at 2.640 kb on - strand, within BACOVA_01224 at 2.640 kb on - strand, within BACOVA_01224 at 2.640 kb on - strand, within BACOVA_01224 at 2.640 kb on - strand, within BACOVA_01224 at 2.671 kb on + strand, within BACOVA_01224 at 2.715 kb on - strand, within BACOVA_01224 at 2.723 kb on + strand, within BACOVA_01224 at 2.750 kb on + strand, within BACOVA_01224 at 2.774 kb on - strand, within BACOVA_01224 at 2.812 kb on + strand, within BACOVA_01224 at 2.813 kb on - strand, within BACOVA_01224 at 2.836 kb on + strand, within BACOVA_01224 at 2.859 kb on + strand, within BACOVA_01224 at 2.926 kb on + strand, within BACOVA_01224 at 2.930 kb on - strand, within BACOVA_01224 at 2.936 kb on + strand, within BACOVA_01224 at 2.936 kb on + strand, within BACOVA_01224 at 2.937 kb on - strand, within BACOVA_01224 at 2.957 kb on + strand, within BACOVA_01224 at 2.972 kb on - strand, within BACOVA_01224 at 3.032 kb on - strand, within BACOVA_01224 at 3.089 kb on + strand, within BACOVA_01224 at 3.097 kb on + strand, within BACOVA_01224 at 3.126 kb on - strand, within BACOVA_01224 at 3.126 kb on - strand, within BACOVA_01224 at 3.132 kb on + strand, within BACOVA_01224 at 3.137 kb on - strand, within BACOVA_01224 at 3.137 kb on - strand, within BACOVA_01224 at 3.222 kb on + strand, within BACOVA_01224 at 3.235 kb on + strand, within BACOVA_01224 at 3.235 kb on + strand, within BACOVA_01224 at 3.235 kb on + strand, within BACOVA_01224 at 3.235 kb on + strand, within BACOVA_01224 at 3.236 kb on - strand, within BACOVA_01224 at 3.277 kb on + strand, within BACOVA_01224 at 3.341 kb on - strand, within BACOVA_01224 at 3.350 kb on + strand, within BACOVA_01224 at 3.352 kb on + strand, within BACOVA_01224 at 3.376 kb on - strand, within BACOVA_01224 at 3.454 kb on + strand, within BACOVA_01224 at 3.457 kb on - strand, within BACOVA_01224 at 3.516 kb on - strand, within BACOVA_01224 at 3.521 kb on - strand, within BACOVA_01224 at 3.523 kb on + strand, within BACOVA_01224 at 3.523 kb on + strand, within BACOVA_01224 at 3.525 kb on + strand, within BACOVA_01224 at 3.525 kb on + strand, within BACOVA_01224 at 3.526 kb on - strand, within BACOVA_01224 at 3.526 kb on - strand, within BACOVA_01224 at 3.546 kb on + strand, within BACOVA_01224 at 3.635 kb on + strand, within BACOVA_01224 at 3.635 kb on + strand, within BACOVA_01224 at 3.635 kb on + strand, within BACOVA_01224 at 3.645 kb on - strand, within BACOVA_01224 at 3.645 kb on - strand, within BACOVA_01224 at 3.670 kb on + strand, within BACOVA_01224 at 3.671 kb on - strand, within BACOVA_01224 at 3.725 kb on - strand, within BACOVA_01224 at 3.739 kb on + strand, within BACOVA_01224 at 3.742 kb on - strand, within BACOVA_01224 at 3.742 kb on - strand, within BACOVA_01224 at 3.743 kb on + strand, within BACOVA_01224 at 3.743 kb on + strand, within BACOVA_01224 at 3.743 kb on + strand, within BACOVA_01224 at 3.744 kb on - strand, within BACOVA_01224 at 3.769 kb on + strand, within BACOVA_01224 at 3.770 kb on - strand, within BACOVA_01224 at 3.770 kb on - strand, within BACOVA_01224 at 3.815 kb on - strand, within BACOVA_01224 at 3.839 kb on + strand, within BACOVA_01224 at 3.860 kb on - strand at 3.931 kb on + strand at 3.932 kb on - strand at 3.968 kb on - strand at 4.008 kb on - strand at 4.088 kb on - strand at 4.091 kb on + strand at 4.111 kb on + strand at 4.117 kb on - strand at 4.117 kb on - strand at 4.136 kb on + strand at 4.137 kb on - strand at 4.151 kb on - strand at 4.153 kb on + strand at 4.156 kb on + strand at 4.156 kb on + strand at 4.156 kb on + strand at 4.157 kb on - strand at 4.163 kb on + strand at 4.163 kb on + strand at 4.163 kb on + strand at 4.163 kb on + strand at 4.163 kb on + strand at 4.164 kb on - strand at 4.191 kb on + strand at 4.192 kb on - strand at 4.224 kb on + strand at 4.229 kb on + strand at 4.229 kb on + strand at 4.230 kb on - strand at 4.274 kb on - strand at 4.314 kb on + strand, within BACOVA_01225 at 4.318 kb on - strand, within BACOVA_01225 at 4.318 kb on - strand, within BACOVA_01225 at 4.321 kb on - strand, within BACOVA_01225 at 4.332 kb on + strand, within BACOVA_01225 at 4.342 kb on - strand, within BACOVA_01225 at 4.371 kb on + strand, within BACOVA_01225 at 4.371 kb on + strand, within BACOVA_01225 at 4.398 kb on - strand, within BACOVA_01225 at 4.404 kb on + strand, within BACOVA_01225 at 4.404 kb on + strand, within BACOVA_01225 at 4.404 kb on + strand, within BACOVA_01225 at 4.407 kb on - strand, within BACOVA_01225 at 4.419 kb on + strand, within BACOVA_01225 at 4.463 kb on + strand, within BACOVA_01225 at 4.478 kb on - strand, within BACOVA_01225 at 4.499 kb on + strand, within BACOVA_01225 at 4.500 kb on - strand, within BACOVA_01225 at 4.500 kb on - strand, within BACOVA_01225 at 4.500 kb on - strand, within BACOVA_01225 at 4.515 kb on + strand, within BACOVA_01225 at 4.517 kb on + strand, within BACOVA_01225 at 4.545 kb on + strand, within BACOVA_01225 at 4.546 kb on - strand, within BACOVA_01225 at 4.569 kb on + strand, within BACOVA_01225 at 4.584 kb on - strand, within BACOVA_01225 at 4.587 kb on + strand, within BACOVA_01225 at 4.587 kb on + strand, within BACOVA_01225 at 4.588 kb on - strand, within BACOVA_01225 at 4.591 kb on - strand, within BACOVA_01225 at 4.600 kb on + strand, within BACOVA_01225 at 4.655 kb on + strand, within BACOVA_01225 at 4.657 kb on + strand, within BACOVA_01225 at 4.683 kb on - strand, within BACOVA_01225 at 4.776 kb on + strand, within BACOVA_01225 at 4.776 kb on + strand, within BACOVA_01225 at 4.785 kb on + strand, within BACOVA_01225 at 4.833 kb on + strand, within BACOVA_01225 at 4.833 kb on + strand, within BACOVA_01225 at 4.835 kb on + strand, within BACOVA_01225 at 4.836 kb on - strand, within BACOVA_01225 at 4.850 kb on + strand, within BACOVA_01225 at 4.851 kb on - strand, within BACOVA_01225 at 4.851 kb on - strand, within BACOVA_01225 at 4.854 kb on + strand, within BACOVA_01225 at 4.854 kb on + strand, within BACOVA_01225 at 4.855 kb on - strand, within BACOVA_01225 at 4.856 kb on + strand, within BACOVA_01225 at 4.856 kb on + strand, within BACOVA_01225 at 4.882 kb on + strand, within BACOVA_01225 at 4.904 kb on + strand, within BACOVA_01225 at 4.917 kb on + strand, within BACOVA_01225 at 4.917 kb on + strand, within BACOVA_01225 at 4.951 kb on - strand, within BACOVA_01225 at 4.951 kb on - strand, within BACOVA_01225 at 4.969 kb on - strand, within BACOVA_01225 at 4.971 kb on + strand, within BACOVA_01225 at 4.972 kb on - strand, within BACOVA_01225 at 4.980 kb on + strand, within BACOVA_01225 at 4.981 kb on - strand, within BACOVA_01225
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 467 + -0.4 472 + -0.2 481 + -0.7 489 + -2.8 494 - +1.8 511 - -0.7 514 + -2.8 515 - -2.1 550 + +1.1 551 - +0.9 611 - -3.6 645 + -0.9 710 - -1.3 730 + -1.0 731 - -0.4 740 + -1.9 830 + +0.4 830 + +0.1 878 - -0.3 900 + -2.7 925 + -2.0 925 + -0.4 926 - -1.9 929 - +0.7 932 - -0.5 935 - +0.3 938 - +1.8 964 - -2.8 981 - +0.1 989 - -2.8 998 + +0.5 1,000 + +0.2 1,015 + -0.0 1,091 + +1.1 1,091 + +1.1 1,092 - -0.7 1,156 + -0.5 1,200 - +1.9 1,238 + -0.4 1,293 - -0.6 1,295 - -1.5 1,295 - +2.8 1,301 + -0.8 1,302 - +3.0 1,319 - -1.2 1,337 - -0.1 1,373 - +1.6 1,397 + +2.1 1,397 + -1.8 1,402 - -0.5 1,402 - -1.3 1,408 + +1.1 1,409 - +1.1 1,426 - +0.6 1,465 - +0.6 1,465 - +1.3 1,480 + +0.9 1,497 + -1.4 1,498 - -0.9 1,510 - -1.2 1,529 - +0.4 1,568 - -0.0 1,592 - -1.3 1,592 - -1.6 1,593 + -0.9 1,593 + -0.6 1,606 + -1.0 1,612 + -2.7 1,613 - +0.3 1,665 - -2.0 1,670 + +1.0 1,672 + +1.7 1,675 + +0.2 1,676 - +2.3 1,734 + BACOVA_01224 0.11 +0.4 1,734 + BACOVA_01224 0.11 +3.0 1,734 + BACOVA_01224 0.11 +0.3 1,734 + BACOVA_01224 0.11 +0.7 1,734 + BACOVA_01224 0.11 +2.0 1,735 - BACOVA_01224 0.11 -0.3 1,781 - BACOVA_01224 0.12 +0.3 1,797 - BACOVA_01224 0.13 -0.9 1,834 + BACOVA_01224 0.14 +0.4 1,861 + BACOVA_01224 0.15 -2.7 1,912 + BACOVA_01224 0.17 -0.3 1,937 + BACOVA_01224 0.18 -3.0 1,938 - BACOVA_01224 0.18 -0.5 1,958 + BACOVA_01224 0.19 -0.9 2,018 - BACOVA_01224 0.21 +1.7 2,119 + BACOVA_01224 0.25 +1.3 2,125 - BACOVA_01224 0.25 -0.7 2,125 - BACOVA_01224 0.25 -0.3 2,126 + BACOVA_01224 0.25 +1.1 2,127 - BACOVA_01224 0.25 +1.7 2,127 - BACOVA_01224 0.25 -0.2 2,146 + BACOVA_01224 0.26 -0.7 2,146 + BACOVA_01224 0.26 +1.7 2,397 + BACOVA_01224 0.36 -0.5 2,624 - BACOVA_01224 0.44 +2.2 2,637 + BACOVA_01224 0.45 -1.6 2,637 + BACOVA_01224 0.45 +3.2 2,637 + BACOVA_01224 0.45 +1.6 2,638 - BACOVA_01224 0.45 -0.1 2,638 - BACOVA_01224 0.45 -0.9 2,638 - BACOVA_01224 0.45 +1.3 2,638 - BACOVA_01224 0.45 -1.8 2,638 - BACOVA_01224 0.45 +0.3 2,639 + BACOVA_01224 0.45 -0.2 2,640 - BACOVA_01224 0.45 +1.1 2,640 - BACOVA_01224 0.45 +2.4 2,640 - BACOVA_01224 0.45 +1.3 2,640 - BACOVA_01224 0.45 +1.7 2,671 + BACOVA_01224 0.46 -1.5 2,715 - BACOVA_01224 0.47 -1.0 2,723 + BACOVA_01224 0.48 -1.5 2,750 + BACOVA_01224 0.49 -0.2 2,774 - BACOVA_01224 0.50 -2.1 2,812 + BACOVA_01224 0.51 -0.6 2,813 - BACOVA_01224 0.51 -0.0 2,836 + BACOVA_01224 0.52 -0.3 2,859 + BACOVA_01224 0.53 +0.6 2,926 + BACOVA_01224 0.55 -2.4 2,930 - BACOVA_01224 0.56 -0.0 2,936 + BACOVA_01224 0.56 -0.5 2,936 + BACOVA_01224 0.56 +1.6 2,937 - BACOVA_01224 0.56 -0.3 2,957 + BACOVA_01224 0.57 +1.3 2,972 - BACOVA_01224 0.57 +0.3 3,032 - BACOVA_01224 0.59 +2.5 3,089 + BACOVA_01224 0.62 +1.8 3,097 + BACOVA_01224 0.62 -0.7 3,126 - BACOVA_01224 0.63 +0.5 3,126 - BACOVA_01224 0.63 +2.9 3,132 + BACOVA_01224 0.63 +0.5 3,137 - BACOVA_01224 0.63 -0.4 3,137 - BACOVA_01224 0.63 -0.2 3,222 + BACOVA_01224 0.67 +0.3 3,235 + BACOVA_01224 0.67 +2.4 3,235 + BACOVA_01224 0.67 -2.0 3,235 + BACOVA_01224 0.67 -0.0 3,235 + BACOVA_01224 0.67 -2.8 3,236 - BACOVA_01224 0.67 -0.0 3,277 + BACOVA_01224 0.69 +1.5 3,341 - BACOVA_01224 0.71 +0.3 3,350 + BACOVA_01224 0.71 +0.6 3,352 + BACOVA_01224 0.71 +2.4 3,376 - BACOVA_01224 0.72 -0.2 3,454 + BACOVA_01224 0.75 +2.8 3,457 - BACOVA_01224 0.75 +2.0 3,516 - BACOVA_01224 0.78 -0.4 3,521 - BACOVA_01224 0.78 +0.8 3,523 + BACOVA_01224 0.78 -3.0 3,523 + BACOVA_01224 0.78 -0.3 3,525 + BACOVA_01224 0.78 -1.2 3,525 + BACOVA_01224 0.78 -0.5 3,526 - BACOVA_01224 0.78 -2.5 3,526 - BACOVA_01224 0.78 +0.4 3,546 + BACOVA_01224 0.79 -3.1 3,635 + BACOVA_01224 0.82 +0.4 3,635 + BACOVA_01224 0.82 -2.3 3,635 + BACOVA_01224 0.82 +2.3 3,645 - BACOVA_01224 0.83 -0.0 3,645 - BACOVA_01224 0.83 -3.5 3,670 + BACOVA_01224 0.83 -0.7 3,671 - BACOVA_01224 0.84 -2.5 3,725 - BACOVA_01224 0.86 -0.1 3,739 + BACOVA_01224 0.86 +1.1 3,742 - BACOVA_01224 0.86 +0.8 3,742 - BACOVA_01224 0.86 +0.1 3,743 + BACOVA_01224 0.86 -0.1 3,743 + BACOVA_01224 0.86 +0.8 3,743 + BACOVA_01224 0.86 -2.4 3,744 - BACOVA_01224 0.86 -0.1 3,769 + BACOVA_01224 0.87 +1.9 3,770 - BACOVA_01224 0.87 +0.5 3,770 - BACOVA_01224 0.87 -2.3 3,815 - BACOVA_01224 0.89 +1.1 3,839 + BACOVA_01224 0.90 -1.9 3,860 - +0.0 3,931 + +1.3 3,932 - +0.8 3,968 - +2.3 4,008 - -1.7 4,088 - +1.1 4,091 + +0.8 4,111 + +0.3 4,117 - -1.1 4,117 - -1.9 4,136 + +0.6 4,137 - +1.8 4,151 - +2.4 4,153 + -0.0 4,156 + +0.2 4,156 + +0.2 4,156 + -0.9 4,157 - +0.0 4,163 + -1.3 4,163 + +0.7 4,163 + -0.4 4,163 + -0.3 4,163 + +0.6 4,164 - -0.8 4,191 + -0.5 4,192 - +0.8 4,224 + -0.4 4,229 + +1.6 4,229 + -2.3 4,230 - -0.7 4,274 - +0.9 4,314 + BACOVA_01225 0.12 -0.3 4,318 - BACOVA_01225 0.12 -1.3 4,318 - BACOVA_01225 0.12 -1.3 4,321 - BACOVA_01225 0.12 -1.1 4,332 + BACOVA_01225 0.13 -3.4 4,342 - BACOVA_01225 0.14 -0.9 4,371 + BACOVA_01225 0.16 -4.6 4,371 + BACOVA_01225 0.16 +0.5 4,398 - BACOVA_01225 0.17 -2.4 4,404 + BACOVA_01225 0.18 -2.3 4,404 + BACOVA_01225 0.18 -0.8 4,404 + BACOVA_01225 0.18 +0.5 4,407 - BACOVA_01225 0.18 +2.7 4,419 + BACOVA_01225 0.19 +0.8 4,463 + BACOVA_01225 0.22 +1.3 4,478 - BACOVA_01225 0.23 -2.9 4,499 + BACOVA_01225 0.24 +0.3 4,500 - BACOVA_01225 0.24 +2.0 4,500 - BACOVA_01225 0.24 -2.3 4,500 - BACOVA_01225 0.24 -0.7 4,515 + BACOVA_01225 0.25 -3.1 4,517 + BACOVA_01225 0.25 +0.7 4,545 + BACOVA_01225 0.27 -1.3 4,546 - BACOVA_01225 0.27 -0.7 4,569 + BACOVA_01225 0.28 -1.8 4,584 - BACOVA_01225 0.29 -0.7 4,587 + BACOVA_01225 0.29 +1.8 4,587 + BACOVA_01225 0.29 -0.2 4,588 - BACOVA_01225 0.30 +0.8 4,591 - BACOVA_01225 0.30 +1.8 4,600 + BACOVA_01225 0.30 +0.6 4,655 + BACOVA_01225 0.34 +0.3 4,657 + BACOVA_01225 0.34 -2.5 4,683 - BACOVA_01225 0.36 -0.7 4,776 + BACOVA_01225 0.42 +0.0 4,776 + BACOVA_01225 0.42 +0.0 4,785 + BACOVA_01225 0.42 -1.6 4,833 + BACOVA_01225 0.45 +1.1 4,833 + BACOVA_01225 0.45 +0.5 4,835 + BACOVA_01225 0.45 -1.4 4,836 - BACOVA_01225 0.45 +0.6 4,850 + BACOVA_01225 0.46 -0.9 4,851 - BACOVA_01225 0.46 -0.5 4,851 - BACOVA_01225 0.46 -2.1 4,854 + BACOVA_01225 0.47 +2.0 4,854 + BACOVA_01225 0.47 -1.7 4,855 - BACOVA_01225 0.47 +0.9 4,856 + BACOVA_01225 0.47 +0.8 4,856 + BACOVA_01225 0.47 -0.7 4,882 + BACOVA_01225 0.48 +0.2 4,904 + BACOVA_01225 0.50 -2.0 4,917 + BACOVA_01225 0.51 -1.6 4,917 + BACOVA_01225 0.51 +1.5 4,951 - BACOVA_01225 0.53 +0.0 4,951 - BACOVA_01225 0.53 -0.3 4,969 - BACOVA_01225 0.54 -0.5 4,971 + BACOVA_01225 0.54 +0.6 4,972 - BACOVA_01225 0.54 -1.2 4,980 + BACOVA_01225 0.55 +1.1 4,981 - BACOVA_01225 0.55 -0.2
Or see this region's nucleotide sequence