Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01044 and BACOVA_01045 are separated by 51 nucleotides BACOVA_01045 and BACOVA_01046 are separated by 10 nucleotides BACOVA_01046 and BACOVA_01047 are separated by 28 nucleotides BACOVA_01047 and BACOVA_01048 are separated by 85 nucleotides BACOVA_01048 and BACOVA_01049 are separated by 97 nucleotides BACOVA_01049 and BACOVA_01050 are separated by 17 nucleotides
BACOVA_01044: BACOVA_01044 - putative translation elongation factor Tu, at 255,517 to 256,701
_01044
BACOVA_01045: BACOVA_01045 - tRNA-Thr, at 256,753 to 256,824
_01045
BACOVA_01046: BACOVA_01046 - tRNA-Gly, at 256,835 to 256,907
_01046
BACOVA_01047: BACOVA_01047 - tRNA-Tyr, at 256,936 to 257,018
_01047
BACOVA_01048: BACOVA_01048 - tRNA-Thr, at 257,104 to 257,177
_01048
BACOVA_01049: BACOVA_01049 - hypothetical protein, at 257,275 to 257,574
_01049
BACOVA_01050: BACOVA_01050 - site-specific recombinase, phage integrase family/ribosomal subunit interface protein, at 257,592 to 258,473
_01050
Position (kb) 257
258 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 256.741 kb on - strand at 256.741 kb on - strand at 256.750 kb on - strand at 256.819 kb on - strand at 257.236 kb on - strand at 257.300 kb on + strand at 257.300 kb on + strand at 257.301 kb on - strand at 257.304 kb on + strand at 257.317 kb on + strand, within BACOVA_01049 at 257.358 kb on + strand, within BACOVA_01049 at 257.358 kb on + strand, within BACOVA_01049 at 257.359 kb on - strand, within BACOVA_01049 at 257.379 kb on - strand, within BACOVA_01049 at 257.402 kb on - strand, within BACOVA_01049 at 257.443 kb on + strand, within BACOVA_01049 at 257.453 kb on - strand, within BACOVA_01049 at 257.464 kb on + strand, within BACOVA_01049 at 257.475 kb on + strand, within BACOVA_01049 at 257.575 kb on - strand at 257.578 kb on + strand at 257.616 kb on - strand at 257.616 kb on - strand at 257.745 kb on - strand, within BACOVA_01050 at 257.814 kb on - strand, within BACOVA_01050
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 256,741 - -2.3 256,741 - -2.3 256,750 - -1.7 256,819 - -0.4 257,236 - -2.0 257,300 + -0.6 257,300 + -0.3 257,301 - -2.5 257,304 + -3.1 257,317 + BACOVA_01049 0.14 -0.0 257,358 + BACOVA_01049 0.28 +0.7 257,358 + BACOVA_01049 0.28 -0.6 257,359 - BACOVA_01049 0.28 -0.5 257,379 - BACOVA_01049 0.35 -0.1 257,402 - BACOVA_01049 0.42 -0.7 257,443 + BACOVA_01049 0.56 -1.8 257,453 - BACOVA_01049 0.59 +0.0 257,464 + BACOVA_01049 0.63 -0.6 257,475 + BACOVA_01049 0.67 -0.2 257,575 - -0.3 257,578 + -0.9 257,616 - -1.0 257,616 - +0.7 257,745 - BACOVA_01050 0.17 -3.0 257,814 - BACOVA_01050 0.25 +0.1
Or see this region's nucleotide sequence