Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00909

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00908 and BACOVA_00909 are separated by 152 nucleotidesBACOVA_00909 and BACOVA_00910 overlap by 13 nucleotidesBACOVA_00910 and BACOVA_00911 are separated by 6 nucleotides BACOVA_00908: BACOVA_00908 - hypothetical protein, at 41,441 to 43,057 _00908 BACOVA_00909: BACOVA_00909 - kinase, PfkB family, at 43,210 to 44,130 _00909 BACOVA_00910: BACOVA_00910 - sugar isomerase, KpsF/GutQ family, at 44,118 to 44,723 _00910 BACOVA_00911: BACOVA_00911 - TIGR00730 family protein, at 44,730 to 45,263 _00911 Position (kb) 43 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 42.236 kb on + strand, within BACOVA_00908at 42.237 kb on - strand, within BACOVA_00908at 42.245 kb on + strand, within BACOVA_00908at 42.248 kb on + strand, within BACOVA_00908at 42.248 kb on + strand, within BACOVA_00908at 42.271 kb on + strand, within BACOVA_00908at 42.281 kb on + strand, within BACOVA_00908at 42.282 kb on - strand, within BACOVA_00908at 42.284 kb on + strand, within BACOVA_00908at 42.284 kb on + strand, within BACOVA_00908at 42.285 kb on - strand, within BACOVA_00908at 42.302 kb on + strand, within BACOVA_00908at 42.316 kb on + strand, within BACOVA_00908at 42.317 kb on - strand, within BACOVA_00908at 42.322 kb on + strand, within BACOVA_00908at 42.366 kb on + strand, within BACOVA_00908at 42.366 kb on + strand, within BACOVA_00908at 42.366 kb on + strand, within BACOVA_00908at 42.367 kb on - strand, within BACOVA_00908at 42.367 kb on - strand, within BACOVA_00908at 42.370 kb on + strand, within BACOVA_00908at 42.372 kb on - strand, within BACOVA_00908at 42.393 kb on + strand, within BACOVA_00908at 42.400 kb on + strand, within BACOVA_00908at 42.400 kb on + strand, within BACOVA_00908at 42.401 kb on - strand, within BACOVA_00908at 42.403 kb on - strand, within BACOVA_00908at 42.428 kb on - strand, within BACOVA_00908at 42.428 kb on - strand, within BACOVA_00908at 42.428 kb on - strand, within BACOVA_00908at 42.428 kb on - strand, within BACOVA_00908at 42.433 kb on + strand, within BACOVA_00908at 42.451 kb on + strand, within BACOVA_00908at 42.477 kb on - strand, within BACOVA_00908at 42.488 kb on + strand, within BACOVA_00908at 42.534 kb on - strand, within BACOVA_00908at 42.543 kb on - strand, within BACOVA_00908at 42.543 kb on - strand, within BACOVA_00908at 42.600 kb on + strand, within BACOVA_00908at 42.647 kb on + strand, within BACOVA_00908at 42.647 kb on + strand, within BACOVA_00908at 42.648 kb on - strand, within BACOVA_00908at 42.673 kb on + strand, within BACOVA_00908at 42.760 kb on + strand, within BACOVA_00908at 42.761 kb on - strand, within BACOVA_00908at 42.795 kb on + strand, within BACOVA_00908at 42.800 kb on + strand, within BACOVA_00908at 42.890 kb on + strand, within BACOVA_00908at 42.891 kb on - strand, within BACOVA_00908at 42.908 kb on + strandat 42.909 kb on - strandat 42.932 kb on - strandat 42.933 kb on + strandat 42.933 kb on + strandat 42.971 kb on + strandat 43.007 kb on + strandat 43.021 kb on + strandat 43.028 kb on + strandat 43.029 kb on - strandat 43.034 kb on + strandat 43.034 kb on + strandat 43.035 kb on - strandat 43.041 kb on - strandat 43.059 kb on + strandat 43.062 kb on + strandat 43.063 kb on - strandat 43.066 kb on + strandat 43.066 kb on + strandat 43.067 kb on - strandat 43.102 kb on - strandat 43.121 kb on + strandat 43.135 kb on + strandat 43.181 kb on + strandat 43.182 kb on - strandat 43.182 kb on - strandat 43.185 kb on + strandat 43.185 kb on + strandat 43.186 kb on - strandat 43.186 kb on - strandat 43.187 kb on + strandat 43.199 kb on + strandat 43.298 kb on - strandat 43.330 kb on + strand, within BACOVA_00909at 43.352 kb on + strand, within BACOVA_00909at 43.352 kb on + strand, within BACOVA_00909at 43.353 kb on - strand, within BACOVA_00909at 43.404 kb on + strand, within BACOVA_00909at 43.404 kb on + strand, within BACOVA_00909at 43.407 kb on + strand, within BACOVA_00909at 43.408 kb on - strand, within BACOVA_00909at 43.444 kb on - strand, within BACOVA_00909at 43.455 kb on + strand, within BACOVA_00909at 43.468 kb on + strand, within BACOVA_00909at 43.521 kb on + strand, within BACOVA_00909at 43.530 kb on - strand, within BACOVA_00909at 43.540 kb on + strand, within BACOVA_00909at 43.541 kb on - strand, within BACOVA_00909at 43.541 kb on - strand, within BACOVA_00909at 43.541 kb on - strand, within BACOVA_00909at 43.555 kb on - strand, within BACOVA_00909at 43.556 kb on + strand, within BACOVA_00909at 43.556 kb on + strand, within BACOVA_00909at 43.557 kb on - strand, within BACOVA_00909at 43.557 kb on - strand, within BACOVA_00909at 43.560 kb on + strand, within BACOVA_00909at 43.560 kb on + strand, within BACOVA_00909at 43.560 kb on + strand, within BACOVA_00909at 43.561 kb on - strand, within BACOVA_00909at 43.561 kb on - strand, within BACOVA_00909at 43.561 kb on - strand, within BACOVA_00909at 43.562 kb on + strand, within BACOVA_00909at 43.562 kb on + strand, within BACOVA_00909at 43.562 kb on + strand, within BACOVA_00909at 43.679 kb on + strand, within BACOVA_00909at 43.680 kb on - strand, within BACOVA_00909at 43.680 kb on - strand, within BACOVA_00909at 43.680 kb on - strand, within BACOVA_00909at 43.711 kb on + strand, within BACOVA_00909at 43.712 kb on - strand, within BACOVA_00909at 43.757 kb on + strand, within BACOVA_00909at 43.758 kb on - strand, within BACOVA_00909at 43.758 kb on - strand, within BACOVA_00909at 43.836 kb on - strand, within BACOVA_00909at 43.844 kb on + strand, within BACOVA_00909at 43.883 kb on - strand, within BACOVA_00909at 43.907 kb on - strand, within BACOVA_00909at 43.912 kb on + strand, within BACOVA_00909at 43.912 kb on + strand, within BACOVA_00909at 43.912 kb on + strand, within BACOVA_00909at 43.913 kb on - strand, within BACOVA_00909at 43.929 kb on + strand, within BACOVA_00909at 43.960 kb on - strand, within BACOVA_00909at 44.006 kb on - strand, within BACOVA_00909at 44.032 kb on - strand, within BACOVA_00909at 44.041 kb on + strandat 44.737 kb on - strandat 44.758 kb on - strandat 44.758 kb on - strandat 44.780 kb on - strandat 44.839 kb on - strand, within BACOVA_00911at 44.839 kb on - strand, within BACOVA_00911at 44.858 kb on - strand, within BACOVA_00911at 44.867 kb on - strand, within BACOVA_00911at 44.914 kb on - strand, within BACOVA_00911at 44.914 kb on - strand, within BACOVA_00911at 44.937 kb on - strand, within BACOVA_00911at 45.031 kb on - strand, within BACOVA_00911at 45.031 kb on - strand, within BACOVA_00911at 45.043 kb on - strand, within BACOVA_00911

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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42,236 + BACOVA_00908 0.49 -1.8
42,237 - BACOVA_00908 0.49 -0.5
42,245 + BACOVA_00908 0.50 -0.1
42,248 + BACOVA_00908 0.50 +0.1
42,248 + BACOVA_00908 0.50 -0.0
42,271 + BACOVA_00908 0.51 +2.4
42,281 + BACOVA_00908 0.52 -0.3
42,282 - BACOVA_00908 0.52 -1.4
42,284 + BACOVA_00908 0.52 +0.7
42,284 + BACOVA_00908 0.52 -1.4
42,285 - BACOVA_00908 0.52 -0.4
42,302 + BACOVA_00908 0.53 -0.2
42,316 + BACOVA_00908 0.54 -0.8
42,317 - BACOVA_00908 0.54 -1.4
42,322 + BACOVA_00908 0.54 -0.6
42,366 + BACOVA_00908 0.57 -0.1
42,366 + BACOVA_00908 0.57 -1.2
42,366 + BACOVA_00908 0.57 +0.8
42,367 - BACOVA_00908 0.57 -0.6
42,367 - BACOVA_00908 0.57 -0.5
42,370 + BACOVA_00908 0.57 +0.3
42,372 - BACOVA_00908 0.58 -0.1
42,393 + BACOVA_00908 0.59 -1.4
42,400 + BACOVA_00908 0.59 -1.0
42,400 + BACOVA_00908 0.59 -0.7
42,401 - BACOVA_00908 0.59 +0.4
42,403 - BACOVA_00908 0.59 +0.9
42,428 - BACOVA_00908 0.61 -0.4
42,428 - BACOVA_00908 0.61 +0.7
42,428 - BACOVA_00908 0.61 -0.2
42,428 - BACOVA_00908 0.61 +0.8
42,433 + BACOVA_00908 0.61 -0.0
42,451 + BACOVA_00908 0.62 +2.2
42,477 - BACOVA_00908 0.64 +1.5
42,488 + BACOVA_00908 0.65 -0.8
42,534 - BACOVA_00908 0.68 -2.0
42,543 - BACOVA_00908 0.68 -2.1
42,543 - BACOVA_00908 0.68 -0.6
42,600 + BACOVA_00908 0.72 +0.6
42,647 + BACOVA_00908 0.75 -0.9
42,647 + BACOVA_00908 0.75 +1.4
42,648 - BACOVA_00908 0.75 -0.4
42,673 + BACOVA_00908 0.76 +1.5
42,760 + BACOVA_00908 0.82 -0.4
42,761 - BACOVA_00908 0.82 +0.5
42,795 + BACOVA_00908 0.84 +0.5
42,800 + BACOVA_00908 0.84 -1.7
42,890 + BACOVA_00908 0.90 +2.1
42,891 - BACOVA_00908 0.90 -0.9
42,908 + +0.8
42,909 - +1.8
42,932 - +0.8
42,933 + +0.1
42,933 + -1.8
42,971 + +1.4
43,007 + -1.6
43,021 + -0.0
43,028 + -1.2
43,029 - +1.5
43,034 + -2.0
43,034 + +1.7
43,035 - +0.4
43,041 - +0.3
43,059 + +0.1
43,062 + -0.8
43,063 - +0.6
43,066 + -0.4
43,066 + -1.8
43,067 - -1.0
43,102 - +3.4
43,121 + +0.7
43,135 + +0.1
43,181 + -1.0
43,182 - +0.1
43,182 - -0.4
43,185 + +0.1
43,185 + -1.1
43,186 - -1.4
43,186 - +0.4
43,187 + -2.4
43,199 + -1.0
43,298 - +0.6
43,330 + BACOVA_00909 0.13 -1.4
43,352 + BACOVA_00909 0.15 -2.3
43,352 + BACOVA_00909 0.15 +1.1
43,353 - BACOVA_00909 0.16 -1.1
43,404 + BACOVA_00909 0.21 -3.0
43,404 + BACOVA_00909 0.21 -0.4
43,407 + BACOVA_00909 0.21 -2.0
43,408 - BACOVA_00909 0.21 +0.4
43,444 - BACOVA_00909 0.25 +0.9
43,455 + BACOVA_00909 0.27 -1.1
43,468 + BACOVA_00909 0.28 +0.4
43,521 + BACOVA_00909 0.34 +1.7
43,530 - BACOVA_00909 0.35 +2.0
43,540 + BACOVA_00909 0.36 -1.6
43,541 - BACOVA_00909 0.36 +1.1
43,541 - BACOVA_00909 0.36 -2.0
43,541 - BACOVA_00909 0.36 +0.8
43,555 - BACOVA_00909 0.37 +1.4
43,556 + BACOVA_00909 0.38 +1.2
43,556 + BACOVA_00909 0.38 -1.0
43,557 - BACOVA_00909 0.38 +1.6
43,557 - BACOVA_00909 0.38 -2.3
43,560 + BACOVA_00909 0.38 +0.9
43,560 + BACOVA_00909 0.38 -0.4
43,560 + BACOVA_00909 0.38 -1.3
43,561 - BACOVA_00909 0.38 +2.4
43,561 - BACOVA_00909 0.38 +1.1
43,561 - BACOVA_00909 0.38 -0.2
43,562 + BACOVA_00909 0.38 +0.2
43,562 + BACOVA_00909 0.38 +0.9
43,562 + BACOVA_00909 0.38 -0.7
43,679 + BACOVA_00909 0.51 -0.9
43,680 - BACOVA_00909 0.51 -0.5
43,680 - BACOVA_00909 0.51 +0.4
43,680 - BACOVA_00909 0.51 +0.8
43,711 + BACOVA_00909 0.54 -0.1
43,712 - BACOVA_00909 0.55 -0.1
43,757 + BACOVA_00909 0.59 -0.2
43,758 - BACOVA_00909 0.60 -0.6
43,758 - BACOVA_00909 0.60 +0.3
43,836 - BACOVA_00909 0.68 +0.1
43,844 + BACOVA_00909 0.69 +1.1
43,883 - BACOVA_00909 0.73 +1.4
43,907 - BACOVA_00909 0.76 -1.8
43,912 + BACOVA_00909 0.76 -2.1
43,912 + BACOVA_00909 0.76 -0.0
43,912 + BACOVA_00909 0.76 -0.4
43,913 - BACOVA_00909 0.76 -0.6
43,929 + BACOVA_00909 0.78 -1.5
43,960 - BACOVA_00909 0.81 +0.4
44,006 - BACOVA_00909 0.86 -1.3
44,032 - BACOVA_00909 0.89 +1.3
44,041 + -1.3
44,737 - +1.3
44,758 - +0.9
44,758 - +1.8
44,780 - +1.2
44,839 - BACOVA_00911 0.20 +0.1
44,839 - BACOVA_00911 0.20 +0.9
44,858 - BACOVA_00911 0.24 +0.1
44,867 - BACOVA_00911 0.26 -0.6
44,914 - BACOVA_00911 0.34 -1.0
44,914 - BACOVA_00911 0.34 -1.7
44,937 - BACOVA_00911 0.39 -0.4
45,031 - BACOVA_00911 0.56 -1.4
45,031 - BACOVA_00911 0.56 -0.2
45,043 - BACOVA_00911 0.59 -0.6

Or see this region's nucleotide sequence