Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00904 and BACOVA_00905 are separated by 115 nucleotides BACOVA_00905 and BACOVA_00906 are separated by 243 nucleotides
BACOVA_00904: BACOVA_00904 - DEAD/DEAH box helicase, at 35,278 to 37,212
_00904
BACOVA_00905: BACOVA_00905 - tyrosine phosphatase family, at 37,328 to 38,317
_00905
BACOVA_00906: BACOVA_00906 - hypothetical protein, at 38,561 to 40,027
_00906
Position (kb) 37
38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 36.360 kb on + strand, within BACOVA_00904 at 36.427 kb on + strand, within BACOVA_00904 at 36.463 kb on - strand, within BACOVA_00904 at 36.477 kb on + strand, within BACOVA_00904 at 36.482 kb on + strand, within BACOVA_00904 at 36.507 kb on + strand, within BACOVA_00904 at 36.508 kb on - strand, within BACOVA_00904 at 36.548 kb on + strand, within BACOVA_00904 at 36.692 kb on - strand, within BACOVA_00904 at 36.777 kb on + strand, within BACOVA_00904 at 36.778 kb on - strand, within BACOVA_00904 at 36.781 kb on + strand, within BACOVA_00904 at 36.781 kb on + strand, within BACOVA_00904 at 36.781 kb on + strand, within BACOVA_00904 at 36.782 kb on - strand, within BACOVA_00904 at 36.788 kb on - strand, within BACOVA_00904 at 36.828 kb on + strand, within BACOVA_00904 at 36.833 kb on - strand, within BACOVA_00904 at 36.833 kb on - strand, within BACOVA_00904 at 36.866 kb on - strand, within BACOVA_00904 at 36.866 kb on - strand, within BACOVA_00904 at 36.866 kb on - strand, within BACOVA_00904 at 36.866 kb on - strand, within BACOVA_00904 at 36.893 kb on + strand, within BACOVA_00904 at 36.893 kb on + strand, within BACOVA_00904 at 36.893 kb on + strand, within BACOVA_00904 at 36.893 kb on + strand, within BACOVA_00904 at 36.895 kb on + strand, within BACOVA_00904 at 36.895 kb on + strand, within BACOVA_00904 at 36.895 kb on + strand, within BACOVA_00904 at 36.896 kb on - strand, within BACOVA_00904 at 36.899 kb on - strand, within BACOVA_00904 at 36.902 kb on - strand, within BACOVA_00904 at 36.904 kb on + strand, within BACOVA_00904 at 36.911 kb on - strand, within BACOVA_00904 at 36.923 kb on + strand, within BACOVA_00904 at 36.952 kb on + strand, within BACOVA_00904 at 37.085 kb on - strand at 37.085 kb on - strand at 37.085 kb on - strand at 37.085 kb on - strand at 37.103 kb on - strand at 37.174 kb on + strand at 37.214 kb on - strand at 37.224 kb on - strand at 37.279 kb on + strand at 37.283 kb on - strand at 37.307 kb on + strand at 37.319 kb on + strand at 37.319 kb on + strand at 37.329 kb on + strand at 37.330 kb on - strand at 37.330 kb on - strand at 37.344 kb on - strand at 37.401 kb on + strand at 37.402 kb on - strand at 37.410 kb on - strand at 37.419 kb on + strand at 37.474 kb on - strand, within BACOVA_00905 at 37.483 kb on + strand, within BACOVA_00905 at 37.484 kb on - strand, within BACOVA_00905 at 37.513 kb on + strand, within BACOVA_00905 at 37.513 kb on + strand, within BACOVA_00905 at 37.514 kb on - strand, within BACOVA_00905 at 37.514 kb on - strand, within BACOVA_00905 at 37.514 kb on - strand, within BACOVA_00905 at 37.515 kb on + strand, within BACOVA_00905 at 37.515 kb on + strand, within BACOVA_00905 at 37.516 kb on - strand, within BACOVA_00905 at 37.521 kb on + strand, within BACOVA_00905 at 37.522 kb on - strand, within BACOVA_00905 at 37.540 kb on + strand, within BACOVA_00905 at 37.543 kb on + strand, within BACOVA_00905 at 37.543 kb on + strand, within BACOVA_00905 at 37.544 kb on - strand, within BACOVA_00905 at 37.555 kb on + strand, within BACOVA_00905 at 37.566 kb on + strand, within BACOVA_00905 at 37.576 kb on + strand, within BACOVA_00905 at 37.614 kb on - strand, within BACOVA_00905 at 37.651 kb on + strand, within BACOVA_00905 at 37.651 kb on + strand, within BACOVA_00905 at 37.652 kb on - strand, within BACOVA_00905 at 37.722 kb on + strand, within BACOVA_00905 at 37.723 kb on - strand, within BACOVA_00905 at 37.728 kb on - strand, within BACOVA_00905 at 37.734 kb on - strand, within BACOVA_00905 at 37.754 kb on + strand, within BACOVA_00905 at 37.754 kb on + strand, within BACOVA_00905 at 37.764 kb on + strand, within BACOVA_00905 at 37.769 kb on - strand, within BACOVA_00905 at 37.781 kb on + strand, within BACOVA_00905 at 37.840 kb on + strand, within BACOVA_00905 at 37.840 kb on + strand, within BACOVA_00905 at 37.840 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.845 kb on - strand, within BACOVA_00905 at 37.845 kb on - strand, within BACOVA_00905 at 37.845 kb on - strand, within BACOVA_00905 at 37.845 kb on - strand, within BACOVA_00905 at 37.878 kb on + strand, within BACOVA_00905 at 37.904 kb on + strand, within BACOVA_00905 at 37.904 kb on + strand, within BACOVA_00905 at 37.905 kb on - strand, within BACOVA_00905 at 37.905 kb on - strand, within BACOVA_00905 at 37.910 kb on + strand, within BACOVA_00905 at 37.910 kb on + strand, within BACOVA_00905 at 37.911 kb on - strand, within BACOVA_00905 at 37.936 kb on + strand, within BACOVA_00905 at 37.937 kb on - strand, within BACOVA_00905 at 37.986 kb on + strand, within BACOVA_00905 at 37.986 kb on + strand, within BACOVA_00905 at 37.989 kb on - strand, within BACOVA_00905 at 38.032 kb on - strand, within BACOVA_00905 at 38.071 kb on + strand, within BACOVA_00905 at 38.072 kb on - strand, within BACOVA_00905 at 38.072 kb on - strand, within BACOVA_00905 at 38.108 kb on - strand, within BACOVA_00905 at 38.110 kb on + strand, within BACOVA_00905 at 38.114 kb on + strand, within BACOVA_00905 at 38.124 kb on + strand, within BACOVA_00905 at 38.124 kb on + strand, within BACOVA_00905 at 38.125 kb on - strand, within BACOVA_00905 at 38.128 kb on - strand, within BACOVA_00905 at 38.131 kb on - strand, within BACOVA_00905 at 38.154 kb on - strand, within BACOVA_00905 at 38.167 kb on + strand, within BACOVA_00905 at 38.168 kb on - strand, within BACOVA_00905 at 38.212 kb on + strand, within BACOVA_00905 at 38.235 kb on + strand at 38.256 kb on - strand at 38.281 kb on + strand at 38.285 kb on - strand at 38.294 kb on + strand at 38.295 kb on - strand at 38.321 kb on + strand at 38.322 kb on - strand at 38.323 kb on + strand at 38.323 kb on + strand at 38.324 kb on - strand at 38.324 kb on - strand at 38.324 kb on - strand at 38.357 kb on + strand at 38.378 kb on + strand at 38.390 kb on - strand at 38.391 kb on + strand at 38.395 kb on + strand at 38.451 kb on + strand at 38.466 kb on - strand at 38.466 kb on - strand at 38.486 kb on - strand at 38.547 kb on - strand at 38.560 kb on - strand at 38.562 kb on + strand at 38.563 kb on - strand at 38.630 kb on - strand at 38.630 kb on - strand at 38.696 kb on - strand at 38.724 kb on - strand, within BACOVA_00906 at 38.733 kb on - strand, within BACOVA_00906 at 38.767 kb on + strand, within BACOVA_00906 at 38.767 kb on + strand, within BACOVA_00906 at 38.785 kb on + strand, within BACOVA_00906 at 38.785 kb on + strand, within BACOVA_00906 at 38.799 kb on - strand, within BACOVA_00906 at 38.859 kb on + strand, within BACOVA_00906 at 38.905 kb on + strand, within BACOVA_00906 at 38.917 kb on + strand, within BACOVA_00906 at 38.918 kb on - strand, within BACOVA_00906 at 38.918 kb on - strand, within BACOVA_00906 at 38.922 kb on - strand, within BACOVA_00906 at 38.922 kb on - strand, within BACOVA_00906 at 38.922 kb on - strand, within BACOVA_00906 at 38.935 kb on - strand, within BACOVA_00906 at 38.957 kb on + strand, within BACOVA_00906 at 39.010 kb on + strand, within BACOVA_00906 at 39.025 kb on - strand, within BACOVA_00906 at 39.028 kb on + strand, within BACOVA_00906 at 39.028 kb on + strand, within BACOVA_00906 at 39.028 kb on + strand, within BACOVA_00906 at 39.029 kb on - strand, within BACOVA_00906 at 39.029 kb on - strand, within BACOVA_00906 at 39.039 kb on + strand, within BACOVA_00906 at 39.039 kb on + strand, within BACOVA_00906 at 39.039 kb on + strand, within BACOVA_00906 at 39.069 kb on - strand, within BACOVA_00906 at 39.088 kb on + strand, within BACOVA_00906 at 39.089 kb on - strand, within BACOVA_00906 at 39.172 kb on + strand, within BACOVA_00906 at 39.199 kb on + strand, within BACOVA_00906 at 39.199 kb on + strand, within BACOVA_00906 at 39.234 kb on - strand, within BACOVA_00906 at 39.276 kb on - strand, within BACOVA_00906 at 39.280 kb on + strand, within BACOVA_00906
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 36,360 + BACOVA_00904 0.56 +2.1 36,427 + BACOVA_00904 0.59 -0.9 36,463 - BACOVA_00904 0.61 -3.4 36,477 + BACOVA_00904 0.62 +0.5 36,482 + BACOVA_00904 0.62 +1.0 36,507 + BACOVA_00904 0.64 -3.2 36,508 - BACOVA_00904 0.64 +1.2 36,548 + BACOVA_00904 0.66 -3.7 36,692 - BACOVA_00904 0.73 -1.8 36,777 + BACOVA_00904 0.77 -0.3 36,778 - BACOVA_00904 0.78 -0.2 36,781 + BACOVA_00904 0.78 +1.4 36,781 + BACOVA_00904 0.78 +1.4 36,781 + BACOVA_00904 0.78 -1.8 36,782 - BACOVA_00904 0.78 -1.4 36,788 - BACOVA_00904 0.78 +0.1 36,828 + BACOVA_00904 0.80 -1.7 36,833 - BACOVA_00904 0.80 -1.0 36,833 - BACOVA_00904 0.80 -1.7 36,866 - BACOVA_00904 0.82 +1.5 36,866 - BACOVA_00904 0.82 +0.3 36,866 - BACOVA_00904 0.82 +0.6 36,866 - BACOVA_00904 0.82 -3.7 36,893 + BACOVA_00904 0.83 +0.6 36,893 + BACOVA_00904 0.83 -2.3 36,893 + BACOVA_00904 0.83 -0.8 36,893 + BACOVA_00904 0.83 +2.0 36,895 + BACOVA_00904 0.84 -0.4 36,895 + BACOVA_00904 0.84 -0.6 36,895 + BACOVA_00904 0.84 +1.8 36,896 - BACOVA_00904 0.84 +1.9 36,899 - BACOVA_00904 0.84 +0.7 36,902 - BACOVA_00904 0.84 +0.4 36,904 + BACOVA_00904 0.84 +0.6 36,911 - BACOVA_00904 0.84 -2.3 36,923 + BACOVA_00904 0.85 -1.2 36,952 + BACOVA_00904 0.87 -0.6 37,085 - -0.2 37,085 - +0.3 37,085 - +0.4 37,085 - -2.3 37,103 - -3.1 37,174 + -0.5 37,214 - -1.4 37,224 - -2.3 37,279 + +1.0 37,283 - +3.1 37,307 + -0.4 37,319 + -1.4 37,319 + +0.7 37,329 + -0.7 37,330 - +0.2 37,330 - -1.0 37,344 - -0.8 37,401 + -2.8 37,402 - +0.8 37,410 - -1.1 37,419 + -2.9 37,474 - BACOVA_00905 0.15 +0.8 37,483 + BACOVA_00905 0.16 -2.9 37,484 - BACOVA_00905 0.16 -0.3 37,513 + BACOVA_00905 0.19 -1.8 37,513 + BACOVA_00905 0.19 +1.3 37,514 - BACOVA_00905 0.19 -3.0 37,514 - BACOVA_00905 0.19 -1.7 37,514 - BACOVA_00905 0.19 +0.8 37,515 + BACOVA_00905 0.19 +0.4 37,515 + BACOVA_00905 0.19 -0.6 37,516 - BACOVA_00905 0.19 -0.9 37,521 + BACOVA_00905 0.19 -1.3 37,522 - BACOVA_00905 0.20 -1.8 37,540 + BACOVA_00905 0.21 -1.0 37,543 + BACOVA_00905 0.22 -2.2 37,543 + BACOVA_00905 0.22 +0.2 37,544 - BACOVA_00905 0.22 -1.3 37,555 + BACOVA_00905 0.23 -1.8 37,566 + BACOVA_00905 0.24 -0.0 37,576 + BACOVA_00905 0.25 -0.2 37,614 - BACOVA_00905 0.29 -0.2 37,651 + BACOVA_00905 0.33 -3.6 37,651 + BACOVA_00905 0.33 +1.6 37,652 - BACOVA_00905 0.33 +1.3 37,722 + BACOVA_00905 0.40 -3.3 37,723 - BACOVA_00905 0.40 -2.4 37,728 - BACOVA_00905 0.40 +0.4 37,734 - BACOVA_00905 0.41 -0.1 37,754 + BACOVA_00905 0.43 -0.1 37,754 + BACOVA_00905 0.43 -0.7 37,764 + BACOVA_00905 0.44 +0.1 37,769 - BACOVA_00905 0.45 +1.9 37,781 + BACOVA_00905 0.46 +1.7 37,840 + BACOVA_00905 0.52 -0.6 37,840 + BACOVA_00905 0.52 +0.3 37,840 + BACOVA_00905 0.52 +2.8 37,844 + BACOVA_00905 0.52 -0.3 37,844 + BACOVA_00905 0.52 -0.4 37,844 + BACOVA_00905 0.52 +0.3 37,844 + BACOVA_00905 0.52 +0.6 37,844 + BACOVA_00905 0.52 +1.1 37,845 - BACOVA_00905 0.52 +1.7 37,845 - BACOVA_00905 0.52 +0.2 37,845 - BACOVA_00905 0.52 -2.1 37,845 - BACOVA_00905 0.52 +1.8 37,878 + BACOVA_00905 0.56 -2.3 37,904 + BACOVA_00905 0.58 -2.8 37,904 + BACOVA_00905 0.58 -0.8 37,905 - BACOVA_00905 0.58 +0.8 37,905 - BACOVA_00905 0.58 -1.3 37,910 + BACOVA_00905 0.59 -1.2 37,910 + BACOVA_00905 0.59 -0.4 37,911 - BACOVA_00905 0.59 -0.9 37,936 + BACOVA_00905 0.61 +0.1 37,937 - BACOVA_00905 0.62 -0.8 37,986 + BACOVA_00905 0.66 +1.2 37,986 + BACOVA_00905 0.66 +1.8 37,989 - BACOVA_00905 0.67 -0.7 38,032 - BACOVA_00905 0.71 -2.9 38,071 + BACOVA_00905 0.75 +0.0 38,072 - BACOVA_00905 0.75 +1.4 38,072 - BACOVA_00905 0.75 -0.6 38,108 - BACOVA_00905 0.79 -0.9 38,110 + BACOVA_00905 0.79 -2.3 38,114 + BACOVA_00905 0.79 -1.2 38,124 + BACOVA_00905 0.80 +0.3 38,124 + BACOVA_00905 0.80 +1.5 38,125 - BACOVA_00905 0.81 -2.2 38,128 - BACOVA_00905 0.81 +0.8 38,131 - BACOVA_00905 0.81 +1.6 38,154 - BACOVA_00905 0.83 -0.2 38,167 + BACOVA_00905 0.85 +2.3 38,168 - BACOVA_00905 0.85 -0.9 38,212 + BACOVA_00905 0.89 +2.2 38,235 + +0.6 38,256 - -1.5 38,281 + -0.9 38,285 - +1.0 38,294 + -2.3 38,295 - +1.7 38,321 + -3.9 38,322 - +0.5 38,323 + +0.9 38,323 + -1.3 38,324 - -2.8 38,324 - -0.4 38,324 - -0.1 38,357 + +1.3 38,378 + -3.6 38,390 - -0.1 38,391 + -1.7 38,395 + +0.2 38,451 + -0.6 38,466 - -3.0 38,466 - +1.5 38,486 - +1.2 38,547 - +0.5 38,560 - +1.1 38,562 + -1.6 38,563 - +1.5 38,630 - +1.7 38,630 - +0.9 38,696 - -3.0 38,724 - BACOVA_00906 0.11 -1.3 38,733 - BACOVA_00906 0.12 -3.7 38,767 + BACOVA_00906 0.14 +1.4 38,767 + BACOVA_00906 0.14 +2.1 38,785 + BACOVA_00906 0.15 -0.9 38,785 + BACOVA_00906 0.15 -1.9 38,799 - BACOVA_00906 0.16 -0.2 38,859 + BACOVA_00906 0.20 -1.3 38,905 + BACOVA_00906 0.23 -2.0 38,917 + BACOVA_00906 0.24 +1.2 38,918 - BACOVA_00906 0.24 -0.6 38,918 - BACOVA_00906 0.24 -2.5 38,922 - BACOVA_00906 0.25 +0.6 38,922 - BACOVA_00906 0.25 +0.8 38,922 - BACOVA_00906 0.25 -1.8 38,935 - BACOVA_00906 0.25 -1.8 38,957 + BACOVA_00906 0.27 +1.6 39,010 + BACOVA_00906 0.31 -1.2 39,025 - BACOVA_00906 0.32 +0.3 39,028 + BACOVA_00906 0.32 -0.8 39,028 + BACOVA_00906 0.32 +0.3 39,028 + BACOVA_00906 0.32 -1.7 39,029 - BACOVA_00906 0.32 +1.0 39,029 - BACOVA_00906 0.32 +1.8 39,039 + BACOVA_00906 0.33 +0.3 39,039 + BACOVA_00906 0.33 -0.5 39,039 + BACOVA_00906 0.33 -0.6 39,069 - BACOVA_00906 0.35 -1.6 39,088 + BACOVA_00906 0.36 +1.1 39,089 - BACOVA_00906 0.36 -1.2 39,172 + BACOVA_00906 0.42 +2.0 39,199 + BACOVA_00906 0.43 +0.8 39,199 + BACOVA_00906 0.43 +3.4 39,234 - BACOVA_00906 0.46 +0.3 39,276 - BACOVA_00906 0.49 +1.6 39,280 + BACOVA_00906 0.49 -2.7
Or see this region's nucleotide sequence