Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00608 and BACOVA_00609 are separated by 51 nucleotides BACOVA_00609 and BACOVA_00610 are separated by 441 nucleotides BACOVA_00610 and BACOVA_00612 are separated by 26 nucleotides
BACOVA_00608: BACOVA_00608 - WD40-like protein, at 44,192 to 47,476
_00608
BACOVA_00609: BACOVA_00609 - YihY family protein, at 47,528 to 48,847
_00609
BACOVA_00610: BACOVA_00610 - hypothetical protein, at 49,289 to 49,417
_00610
BACOVA_00612: BACOVA_00612 - NlpC/P60 family protein, at 49,444 to 50,424
_00612
Position (kb)
47
48
49 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 46.558 kb on + strand, within BACOVA_00608 at 46.558 kb on + strand, within BACOVA_00608 at 46.559 kb on - strand, within BACOVA_00608 at 46.589 kb on + strand, within BACOVA_00608 at 46.589 kb on + strand, within BACOVA_00608 at 46.590 kb on - strand, within BACOVA_00608 at 46.591 kb on + strand, within BACOVA_00608 at 46.591 kb on + strand, within BACOVA_00608 at 46.592 kb on - strand, within BACOVA_00608 at 46.621 kb on + strand, within BACOVA_00608 at 46.627 kb on + strand, within BACOVA_00608 at 46.629 kb on + strand, within BACOVA_00608 at 46.644 kb on + strand, within BACOVA_00608 at 46.741 kb on + strand, within BACOVA_00608 at 46.751 kb on + strand, within BACOVA_00608 at 46.752 kb on - strand, within BACOVA_00608 at 46.778 kb on + strand, within BACOVA_00608 at 46.782 kb on + strand, within BACOVA_00608 at 46.783 kb on - strand, within BACOVA_00608 at 46.786 kb on - strand, within BACOVA_00608 at 46.786 kb on - strand, within BACOVA_00608 at 46.878 kb on + strand, within BACOVA_00608 at 46.878 kb on + strand, within BACOVA_00608 at 46.878 kb on + strand, within BACOVA_00608 at 46.878 kb on + strand, within BACOVA_00608 at 46.879 kb on - strand, within BACOVA_00608 at 46.900 kb on + strand, within BACOVA_00608 at 46.901 kb on - strand, within BACOVA_00608 at 46.901 kb on - strand, within BACOVA_00608 at 46.926 kb on + strand, within BACOVA_00608 at 46.927 kb on - strand, within BACOVA_00608 at 46.927 kb on - strand, within BACOVA_00608 at 46.953 kb on + strand, within BACOVA_00608 at 46.954 kb on - strand, within BACOVA_00608 at 46.972 kb on + strand, within BACOVA_00608 at 46.973 kb on - strand, within BACOVA_00608 at 47.044 kb on - strand, within BACOVA_00608 at 47.251 kb on + strand at 47.338 kb on - strand at 47.338 kb on - strand at 47.405 kb on + strand at 47.439 kb on - strand at 47.459 kb on + strand at 47.460 kb on - strand at 47.495 kb on - strand at 47.529 kb on + strand at 47.546 kb on + strand at 47.547 kb on - strand at 47.551 kb on + strand at 47.552 kb on - strand at 47.565 kb on + strand at 47.568 kb on + strand at 47.568 kb on + strand at 47.649 kb on + strand at 47.771 kb on + strand, within BACOVA_00609 at 47.839 kb on + strand, within BACOVA_00609 at 47.900 kb on - strand, within BACOVA_00609 at 47.973 kb on + strand, within BACOVA_00609 at 48.032 kb on + strand, within BACOVA_00609 at 48.057 kb on + strand, within BACOVA_00609 at 48.069 kb on + strand, within BACOVA_00609 at 48.069 kb on + strand, within BACOVA_00609 at 48.140 kb on - strand, within BACOVA_00609 at 48.192 kb on + strand, within BACOVA_00609 at 48.192 kb on + strand, within BACOVA_00609 at 48.233 kb on - strand, within BACOVA_00609 at 48.304 kb on + strand, within BACOVA_00609 at 48.367 kb on - strand, within BACOVA_00609 at 48.373 kb on + strand, within BACOVA_00609 at 48.384 kb on + strand, within BACOVA_00609 at 48.436 kb on + strand, within BACOVA_00609 at 48.437 kb on - strand, within BACOVA_00609 at 48.440 kb on - strand, within BACOVA_00609 at 48.473 kb on + strand, within BACOVA_00609 at 48.474 kb on - strand, within BACOVA_00609 at 48.496 kb on + strand, within BACOVA_00609 at 48.496 kb on + strand, within BACOVA_00609 at 48.560 kb on + strand, within BACOVA_00609 at 48.671 kb on - strand, within BACOVA_00609 at 48.672 kb on + strand, within BACOVA_00609 at 48.672 kb on + strand, within BACOVA_00609 at 48.673 kb on - strand, within BACOVA_00609 at 48.677 kb on - strand, within BACOVA_00609 at 48.677 kb on - strand, within BACOVA_00609 at 48.725 kb on - strand at 48.811 kb on + strand at 48.825 kb on - strand at 48.884 kb on - strand at 48.884 kb on - strand at 49.349 kb on - strand, within BACOVA_00610 at 49.402 kb on + strand, within BACOVA_00610 at 49.403 kb on - strand, within BACOVA_00610 at 49.424 kb on + strand at 49.443 kb on - strand at 49.494 kb on + strand at 49.514 kb on + strand at 49.548 kb on - strand, within BACOVA_00612 at 49.551 kb on - strand, within BACOVA_00612 at 49.554 kb on + strand, within BACOVA_00612 at 49.555 kb on - strand, within BACOVA_00612 at 49.645 kb on + strand, within BACOVA_00612 at 49.645 kb on + strand, within BACOVA_00612 at 49.664 kb on + strand, within BACOVA_00612 at 49.682 kb on - strand, within BACOVA_00612 at 49.732 kb on + strand, within BACOVA_00612 at 49.732 kb on + strand, within BACOVA_00612 at 49.768 kb on - strand, within BACOVA_00612 at 49.789 kb on + strand, within BACOVA_00612 at 49.790 kb on - strand, within BACOVA_00612
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 46,558 + BACOVA_00608 0.72 -0.7 46,558 + BACOVA_00608 0.72 -1.2 46,559 - BACOVA_00608 0.72 +0.8 46,589 + BACOVA_00608 0.73 -2.1 46,589 + BACOVA_00608 0.73 -3.0 46,590 - BACOVA_00608 0.73 +0.5 46,591 + BACOVA_00608 0.73 -0.7 46,591 + BACOVA_00608 0.73 -1.4 46,592 - BACOVA_00608 0.73 -2.1 46,621 + BACOVA_00608 0.74 -0.8 46,627 + BACOVA_00608 0.74 +1.1 46,629 + BACOVA_00608 0.74 +0.6 46,644 + BACOVA_00608 0.75 +1.3 46,741 + BACOVA_00608 0.78 -1.0 46,751 + BACOVA_00608 0.78 -0.4 46,752 - BACOVA_00608 0.78 -0.1 46,778 + BACOVA_00608 0.79 +2.1 46,782 + BACOVA_00608 0.79 -1.3 46,783 - BACOVA_00608 0.79 +1.3 46,786 - BACOVA_00608 0.79 -1.0 46,786 - BACOVA_00608 0.79 -1.5 46,878 + BACOVA_00608 0.82 +0.5 46,878 + BACOVA_00608 0.82 -0.0 46,878 + BACOVA_00608 0.82 +0.7 46,878 + BACOVA_00608 0.82 +0.4 46,879 - BACOVA_00608 0.82 -1.9 46,900 + BACOVA_00608 0.82 -1.1 46,901 - BACOVA_00608 0.82 +2.0 46,901 - BACOVA_00608 0.82 +2.2 46,926 + BACOVA_00608 0.83 +0.3 46,927 - BACOVA_00608 0.83 +1.1 46,927 - BACOVA_00608 0.83 +1.7 46,953 + BACOVA_00608 0.84 -1.2 46,954 - BACOVA_00608 0.84 +1.5 46,972 + BACOVA_00608 0.85 +1.2 46,973 - BACOVA_00608 0.85 -0.8 47,044 - BACOVA_00608 0.87 -2.1 47,251 + -0.9 47,338 - +0.5 47,338 - -2.4 47,405 + +1.3 47,439 - +0.4 47,459 + -0.5 47,460 - -0.4 47,495 - -3.1 47,529 + +1.9 47,546 + -2.1 47,547 - -1.3 47,551 + -1.3 47,552 - -1.7 47,565 + +0.5 47,568 + -1.5 47,568 + +1.6 47,649 + +0.5 47,771 + BACOVA_00609 0.18 +0.8 47,839 + BACOVA_00609 0.24 -0.6 47,900 - BACOVA_00609 0.28 -0.4 47,973 + BACOVA_00609 0.34 +2.1 48,032 + BACOVA_00609 0.38 -2.8 48,057 + BACOVA_00609 0.40 +1.7 48,069 + BACOVA_00609 0.41 +1.1 48,069 + BACOVA_00609 0.41 -0.6 48,140 - BACOVA_00609 0.46 +0.4 48,192 + BACOVA_00609 0.50 +2.3 48,192 + BACOVA_00609 0.50 -1.3 48,233 - BACOVA_00609 0.53 +2.7 48,304 + BACOVA_00609 0.59 +1.7 48,367 - BACOVA_00609 0.64 +0.4 48,373 + BACOVA_00609 0.64 +0.9 48,384 + BACOVA_00609 0.65 -2.4 48,436 + BACOVA_00609 0.69 +0.5 48,437 - BACOVA_00609 0.69 +0.3 48,440 - BACOVA_00609 0.69 -2.2 48,473 + BACOVA_00609 0.72 +0.9 48,474 - BACOVA_00609 0.72 -1.6 48,496 + BACOVA_00609 0.73 -0.2 48,496 + BACOVA_00609 0.73 -1.5 48,560 + BACOVA_00609 0.78 +0.4 48,671 - BACOVA_00609 0.87 -0.6 48,672 + BACOVA_00609 0.87 -2.8 48,672 + BACOVA_00609 0.87 +1.5 48,673 - BACOVA_00609 0.87 -0.8 48,677 - BACOVA_00609 0.87 +1.7 48,677 - BACOVA_00609 0.87 -1.6 48,725 - +0.1 48,811 + -0.8 48,825 - -2.3 48,884 - -0.2 48,884 - -0.1 49,349 - BACOVA_00610 0.47 -1.5 49,402 + BACOVA_00610 0.88 -0.5 49,403 - BACOVA_00610 0.88 -2.3 49,424 + -1.8 49,443 - -2.6 49,494 + -3.4 49,514 + -0.6 49,548 - BACOVA_00612 0.11 -1.1 49,551 - BACOVA_00612 0.11 -2.1 49,554 + BACOVA_00612 0.11 -2.8 49,555 - BACOVA_00612 0.11 +1.8 49,645 + BACOVA_00612 0.20 +0.2 49,645 + BACOVA_00612 0.20 +1.9 49,664 + BACOVA_00612 0.22 +1.0 49,682 - BACOVA_00612 0.24 -1.9 49,732 + BACOVA_00612 0.29 -1.9 49,732 + BACOVA_00612 0.29 +0.6 49,768 - BACOVA_00612 0.33 -1.2 49,789 + BACOVA_00612 0.35 +1.3 49,790 - BACOVA_00612 0.35 +2.8
Or see this region's nucleotide sequence