Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00584 and BACOVA_00585 are separated by 10 nucleotides BACOVA_00585 and BACOVA_00586 overlap by 26 nucleotides
BACOVA_00584: BACOVA_00584 - RyR domain protein, at 18,646 to 19,734
_00584
BACOVA_00585: BACOVA_00585 - RyR domain protein, at 19,745 to 20,050
_00585
BACOVA_00586: BACOVA_00586 - tetratricopeptide repeat protein, at 20,025 to 23,306
_00586
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.912 kb on + strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.996 kb on + strand, within BACOVA_00584 at 19.001 kb on + strand, within BACOVA_00584 at 19.002 kb on - strand, within BACOVA_00584 at 19.057 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.113 kb on + strand, within BACOVA_00584 at 19.114 kb on - strand, within BACOVA_00584 at 19.134 kb on + strand, within BACOVA_00584 at 19.135 kb on - strand, within BACOVA_00584 at 19.148 kb on + strand, within BACOVA_00584 at 19.154 kb on - strand, within BACOVA_00584 at 19.167 kb on - strand, within BACOVA_00584 at 19.179 kb on - strand, within BACOVA_00584 at 19.252 kb on - strand, within BACOVA_00584 at 19.326 kb on + strand, within BACOVA_00584 at 19.505 kb on - strand, within BACOVA_00584 at 19.530 kb on + strand, within BACOVA_00584 at 19.542 kb on + strand, within BACOVA_00584 at 19.570 kb on + strand, within BACOVA_00584 at 19.572 kb on + strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.576 kb on - strand, within BACOVA_00584 at 19.674 kb on + strand at 19.687 kb on + strand at 19.738 kb on - strand at 19.739 kb on + strand at 19.739 kb on + strand at 19.740 kb on - strand at 19.740 kb on - strand at 19.766 kb on + strand at 19.820 kb on + strand, within BACOVA_00585 at 19.892 kb on + strand, within BACOVA_00585 at 19.892 kb on + strand, within BACOVA_00585 at 20.049 kb on - strand at 20.076 kb on - strand at 20.076 kb on - strand at 20.122 kb on + strand at 20.122 kb on + strand at 20.136 kb on + strand at 20.186 kb on + strand at 20.303 kb on + strand at 20.339 kb on + strand at 20.397 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.499 kb on + strand, within BACOVA_00586 at 20.500 kb on - strand, within BACOVA_00586 at 20.500 kb on - strand, within BACOVA_00586 at 20.566 kb on - strand, within BACOVA_00586 at 20.571 kb on + strand, within BACOVA_00586 at 20.611 kb on - strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.634 kb on - strand, within BACOVA_00586 at 20.634 kb on - strand, within BACOVA_00586 at 20.635 kb on + strand, within BACOVA_00586 at 20.635 kb on + strand, within BACOVA_00586 at 20.636 kb on - strand, within BACOVA_00586 at 20.640 kb on + strand, within BACOVA_00586 at 20.684 kb on + strand, within BACOVA_00586 at 20.694 kb on - strand, within BACOVA_00586 at 20.736 kb on + strand, within BACOVA_00586 at 20.816 kb on - strand, within BACOVA_00586 at 20.866 kb on + strand, within BACOVA_00586 at 20.867 kb on - strand, within BACOVA_00586 at 20.867 kb on - strand, within BACOVA_00586 at 20.867 kb on - strand, within BACOVA_00586 at 20.931 kb on - strand, within BACOVA_00586 at 20.932 kb on + strand, within BACOVA_00586 at 20.932 kb on + strand, within BACOVA_00586 at 20.932 kb on + strand, within BACOVA_00586 at 20.932 kb on + strand, within BACOVA_00586 at 20.933 kb on - strand, within BACOVA_00586 at 20.933 kb on - strand, within BACOVA_00586 at 20.933 kb on - strand, within BACOVA_00586 at 20.998 kb on - strand, within BACOVA_00586
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 18,870 + BACOVA_00584 0.21 -1.5 18,870 + BACOVA_00584 0.21 -1.1 18,870 + BACOVA_00584 0.21 -0.4 18,912 + BACOVA_00584 0.24 -1.8 18,928 - BACOVA_00584 0.26 -3.4 18,928 - BACOVA_00584 0.26 -0.9 18,996 + BACOVA_00584 0.32 +0.5 19,001 + BACOVA_00584 0.33 +0.4 19,002 - BACOVA_00584 0.33 -1.6 19,057 - BACOVA_00584 0.38 -2.4 19,071 - BACOVA_00584 0.39 +0.1 19,071 - BACOVA_00584 0.39 -1.9 19,113 + BACOVA_00584 0.43 +0.6 19,114 - BACOVA_00584 0.43 -1.1 19,134 + BACOVA_00584 0.45 -2.1 19,135 - BACOVA_00584 0.45 -0.9 19,148 + BACOVA_00584 0.46 -0.2 19,154 - BACOVA_00584 0.47 +0.1 19,167 - BACOVA_00584 0.48 -1.3 19,179 - BACOVA_00584 0.49 -1.2 19,252 - BACOVA_00584 0.56 +1.3 19,326 + BACOVA_00584 0.62 +0.5 19,505 - BACOVA_00584 0.79 -0.2 19,530 + BACOVA_00584 0.81 -0.2 19,542 + BACOVA_00584 0.82 -0.4 19,570 + BACOVA_00584 0.85 +0.2 19,572 + BACOVA_00584 0.85 -0.8 19,573 - BACOVA_00584 0.85 -1.8 19,573 - BACOVA_00584 0.85 -1.3 19,576 - BACOVA_00584 0.85 -0.4 19,674 + +0.1 19,687 + -1.7 19,738 - -2.2 19,739 + -0.6 19,739 + +2.2 19,740 - +1.0 19,740 - -0.7 19,766 + -3.7 19,820 + BACOVA_00585 0.25 -0.2 19,892 + BACOVA_00585 0.48 -2.2 19,892 + BACOVA_00585 0.48 -0.4 20,049 - +0.9 20,076 - +0.6 20,076 - -2.8 20,122 + -1.6 20,122 + +0.6 20,136 + -2.1 20,186 + -1.9 20,303 + +0.6 20,339 + +2.2 20,397 - BACOVA_00586 0.11 +1.9 20,496 - BACOVA_00586 0.14 +0.3 20,496 - BACOVA_00586 0.14 +1.9 20,496 - BACOVA_00586 0.14 +1.8 20,499 + BACOVA_00586 0.14 -2.7 20,500 - BACOVA_00586 0.14 -1.5 20,500 - BACOVA_00586 0.14 +0.9 20,566 - BACOVA_00586 0.16 -2.4 20,571 + BACOVA_00586 0.17 +2.0 20,611 - BACOVA_00586 0.18 -1.1 20,619 + BACOVA_00586 0.18 -2.8 20,619 + BACOVA_00586 0.18 -2.4 20,619 + BACOVA_00586 0.18 -0.5 20,634 - BACOVA_00586 0.19 +0.7 20,634 - BACOVA_00586 0.19 +0.5 20,635 + BACOVA_00586 0.19 -0.2 20,635 + BACOVA_00586 0.19 +0.7 20,636 - BACOVA_00586 0.19 +0.4 20,640 + BACOVA_00586 0.19 -1.4 20,684 + BACOVA_00586 0.20 -1.4 20,694 - BACOVA_00586 0.20 +1.8 20,736 + BACOVA_00586 0.22 +1.3 20,816 - BACOVA_00586 0.24 +0.1 20,866 + BACOVA_00586 0.26 -0.4 20,867 - BACOVA_00586 0.26 +1.2 20,867 - BACOVA_00586 0.26 -1.3 20,867 - BACOVA_00586 0.26 -0.4 20,931 - BACOVA_00586 0.28 -0.4 20,932 + BACOVA_00586 0.28 -0.1 20,932 + BACOVA_00586 0.28 +1.1 20,932 + BACOVA_00586 0.28 +1.0 20,932 + BACOVA_00586 0.28 +0.1 20,933 - BACOVA_00586 0.28 +2.0 20,933 - BACOVA_00586 0.28 +0.8 20,933 - BACOVA_00586 0.28 -0.9 20,998 - BACOVA_00586 0.30 -2.9
Or see this region's nucleotide sequence