Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00462

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00459 and BACOVA_00460 are separated by 58 nucleotidesBACOVA_00460 and BACOVA_00461 overlap by 4 nucleotidesBACOVA_00461 and BACOVA_00462 are separated by 21 nucleotidesBACOVA_00462 and BACOVA_00463 are separated by 2 nucleotidesBACOVA_00463 and BACOVA_00464 overlap by 4 nucleotides BACOVA_00459: BACOVA_00459 - conjugative transposon TraM protein, at 31,451 to 32,641 _00459 BACOVA_00460: BACOVA_00460 - hypothetical protein, at 32,700 to 32,999 _00460 BACOVA_00461: BACOVA_00461 - conjugative transposon TraK protein, at 32,996 to 33,619 _00461 BACOVA_00462: BACOVA_00462 - conjugative transposon TraJ protein, at 33,641 to 34,654 _00462 BACOVA_00463: BACOVA_00463 - hypothetical protein, at 34,657 to 35,301 _00463 BACOVA_00464: BACOVA_00464 - hypothetical protein, at 35,298 to 35,669 _00464 Position (kb) 33 34 35Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 32.656 kb on + strandat 32.657 kb on - strandat 32.658 kb on + strandat 32.658 kb on + strandat 32.658 kb on + strandat 32.658 kb on + strandat 32.715 kb on - strandat 32.749 kb on + strand, within BACOVA_00460at 32.750 kb on - strand, within BACOVA_00460at 32.750 kb on - strand, within BACOVA_00460at 32.750 kb on - strand, within BACOVA_00460at 32.750 kb on - strand, within BACOVA_00460at 32.774 kb on + strand, within BACOVA_00460at 32.774 kb on + strand, within BACOVA_00460at 32.774 kb on + strand, within BACOVA_00460at 32.774 kb on + strand, within BACOVA_00460at 32.791 kb on - strand, within BACOVA_00460at 32.793 kb on - strand, within BACOVA_00460at 32.793 kb on - strand, within BACOVA_00460at 32.808 kb on - strand, within BACOVA_00460at 32.808 kb on - strand, within BACOVA_00460at 32.870 kb on - strand, within BACOVA_00460at 32.885 kb on + strand, within BACOVA_00460at 32.885 kb on + strand, within BACOVA_00460at 32.955 kb on + strand, within BACOVA_00460at 33.014 kb on + strandat 33.160 kb on - strand, within BACOVA_00461at 33.174 kb on + strand, within BACOVA_00461at 33.175 kb on - strand, within BACOVA_00461at 33.175 kb on - strand, within BACOVA_00461at 33.253 kb on - strand, within BACOVA_00461at 33.253 kb on - strand, within BACOVA_00461at 33.279 kb on + strand, within BACOVA_00461at 33.279 kb on + strand, within BACOVA_00461at 33.279 kb on + strand, within BACOVA_00461at 33.280 kb on - strand, within BACOVA_00461at 33.283 kb on - strand, within BACOVA_00461at 33.288 kb on + strand, within BACOVA_00461at 33.472 kb on - strand, within BACOVA_00461at 33.504 kb on + strand, within BACOVA_00461at 33.548 kb on + strand, within BACOVA_00461at 33.548 kb on + strand, within BACOVA_00461at 33.653 kb on + strandat 33.653 kb on + strandat 33.654 kb on - strandat 33.656 kb on - strandat 33.667 kb on + strandat 33.715 kb on + strandat 33.715 kb on + strandat 33.744 kb on + strand, within BACOVA_00462at 33.744 kb on + strand, within BACOVA_00462at 33.744 kb on + strand, within BACOVA_00462at 33.745 kb on - strand, within BACOVA_00462at 33.802 kb on - strand, within BACOVA_00462at 33.834 kb on + strand, within BACOVA_00462at 33.835 kb on - strand, within BACOVA_00462at 33.889 kb on + strand, within BACOVA_00462at 33.915 kb on - strand, within BACOVA_00462at 33.971 kb on + strand, within BACOVA_00462at 33.971 kb on + strand, within BACOVA_00462at 33.972 kb on - strand, within BACOVA_00462at 33.973 kb on + strand, within BACOVA_00462at 33.974 kb on - strand, within BACOVA_00462at 33.975 kb on + strand, within BACOVA_00462at 33.976 kb on - strand, within BACOVA_00462at 33.976 kb on - strand, within BACOVA_00462at 34.089 kb on - strand, within BACOVA_00462at 34.089 kb on - strand, within BACOVA_00462at 34.164 kb on + strand, within BACOVA_00462at 34.165 kb on - strand, within BACOVA_00462at 34.182 kb on + strand, within BACOVA_00462at 34.267 kb on - strand, within BACOVA_00462at 34.267 kb on - strand, within BACOVA_00462at 34.524 kb on + strand, within BACOVA_00462at 34.525 kb on - strand, within BACOVA_00462at 34.600 kb on - strandat 34.650 kb on - strandat 34.685 kb on + strandat 34.686 kb on - strandat 34.686 kb on - strandat 34.686 kb on - strandat 34.733 kb on + strand, within BACOVA_00463at 34.758 kb on + strand, within BACOVA_00463at 34.759 kb on - strand, within BACOVA_00463at 34.759 kb on - strand, within BACOVA_00463at 34.763 kb on + strand, within BACOVA_00463at 34.882 kb on + strand, within BACOVA_00463at 35.078 kb on + strand, within BACOVA_00463at 35.079 kb on - strand, within BACOVA_00463at 35.079 kb on - strand, within BACOVA_00463at 35.100 kb on - strand, within BACOVA_00463at 35.155 kb on - strand, within BACOVA_00463at 35.163 kb on + strand, within BACOVA_00463at 35.259 kb on + strandat 35.259 kb on + strandat 35.260 kb on - strandat 35.284 kb on + strandat 35.319 kb on + strandat 35.323 kb on + strandat 35.368 kb on + strand, within BACOVA_00464at 35.368 kb on + strand, within BACOVA_00464at 35.369 kb on - strand, within BACOVA_00464at 35.373 kb on + strand, within BACOVA_00464at 35.374 kb on - strand, within BACOVA_00464at 35.486 kb on + strand, within BACOVA_00464

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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32,656 + -0.7
32,657 - +2.0
32,658 + +0.0
32,658 + +0.3
32,658 + -2.3
32,658 + -1.3
32,715 - -2.2
32,749 + BACOVA_00460 0.16 +0.6
32,750 - BACOVA_00460 0.17 -1.8
32,750 - BACOVA_00460 0.17 -2.1
32,750 - BACOVA_00460 0.17 -1.9
32,750 - BACOVA_00460 0.17 -2.3
32,774 + BACOVA_00460 0.25 +0.9
32,774 + BACOVA_00460 0.25 -0.6
32,774 + BACOVA_00460 0.25 -1.4
32,774 + BACOVA_00460 0.25 -2.4
32,791 - BACOVA_00460 0.30 -2.3
32,793 - BACOVA_00460 0.31 +1.5
32,793 - BACOVA_00460 0.31 -2.1
32,808 - BACOVA_00460 0.36 -1.2
32,808 - BACOVA_00460 0.36 -1.9
32,870 - BACOVA_00460 0.57 -0.3
32,885 + BACOVA_00460 0.62 -0.2
32,885 + BACOVA_00460 0.62 +0.7
32,955 + BACOVA_00460 0.85 +0.6
33,014 + -2.0
33,160 - BACOVA_00461 0.26 -3.8
33,174 + BACOVA_00461 0.29 -2.6
33,175 - BACOVA_00461 0.29 -1.0
33,175 - BACOVA_00461 0.29 -0.3
33,253 - BACOVA_00461 0.41 -0.4
33,253 - BACOVA_00461 0.41 -2.0
33,279 + BACOVA_00461 0.45 -1.1
33,279 + BACOVA_00461 0.45 -0.2
33,279 + BACOVA_00461 0.45 -0.2
33,280 - BACOVA_00461 0.46 -1.5
33,283 - BACOVA_00461 0.46 +0.0
33,288 + BACOVA_00461 0.47 -0.3
33,472 - BACOVA_00461 0.76 -1.0
33,504 + BACOVA_00461 0.81 -0.5
33,548 + BACOVA_00461 0.88 -0.0
33,548 + BACOVA_00461 0.88 +0.7
33,653 + +1.3
33,653 + +0.0
33,654 - -0.4
33,656 - -3.4
33,667 + -0.6
33,715 + -1.0
33,715 + -1.1
33,744 + BACOVA_00462 0.10 +0.3
33,744 + BACOVA_00462 0.10 +1.2
33,744 + BACOVA_00462 0.10 -0.4
33,745 - BACOVA_00462 0.10 -1.2
33,802 - BACOVA_00462 0.16 -1.1
33,834 + BACOVA_00462 0.19 +1.2
33,835 - BACOVA_00462 0.19 +2.4
33,889 + BACOVA_00462 0.24 -4.3
33,915 - BACOVA_00462 0.27 -2.6
33,971 + BACOVA_00462 0.33 -2.0
33,971 + BACOVA_00462 0.33 -1.1
33,972 - BACOVA_00462 0.33 +2.1
33,973 + BACOVA_00462 0.33 -0.2
33,974 - BACOVA_00462 0.33 -1.1
33,975 + BACOVA_00462 0.33 +1.6
33,976 - BACOVA_00462 0.33 +2.5
33,976 - BACOVA_00462 0.33 -0.2
34,089 - BACOVA_00462 0.44 -2.3
34,089 - BACOVA_00462 0.44 -0.6
34,164 + BACOVA_00462 0.52 -0.2
34,165 - BACOVA_00462 0.52 -1.1
34,182 + BACOVA_00462 0.53 -0.1
34,267 - BACOVA_00462 0.62 -0.4
34,267 - BACOVA_00462 0.62 +2.6
34,524 + BACOVA_00462 0.87 +0.2
34,525 - BACOVA_00462 0.87 -2.6
34,600 - +0.9
34,650 - +1.9
34,685 + -0.3
34,686 - -0.9
34,686 - -0.4
34,686 - -2.0
34,733 + BACOVA_00463 0.12 +2.9
34,758 + BACOVA_00463 0.16 +0.4
34,759 - BACOVA_00463 0.16 +1.4
34,759 - BACOVA_00463 0.16 -1.0
34,763 + BACOVA_00463 0.16 +0.6
34,882 + BACOVA_00463 0.35 -1.1
35,078 + BACOVA_00463 0.65 -0.3
35,079 - BACOVA_00463 0.65 +0.9
35,079 - BACOVA_00463 0.65 +0.8
35,100 - BACOVA_00463 0.69 +1.0
35,155 - BACOVA_00463 0.77 -0.2
35,163 + BACOVA_00463 0.78 +0.0
35,259 + +0.5
35,259 + +0.5
35,260 - -1.8
35,284 + +1.9
35,319 + +0.8
35,323 + +0.6
35,368 + BACOVA_00464 0.19 -0.4
35,368 + BACOVA_00464 0.19 +0.7
35,369 - BACOVA_00464 0.19 -1.5
35,373 + BACOVA_00464 0.20 +0.3
35,374 - BACOVA_00464 0.20 +0.9
35,486 + BACOVA_00464 0.51 -2.2

Or see this region's nucleotide sequence