Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00253 and BACOVA_00254 are separated by 9 nucleotides BACOVA_00254 and BACOVA_00255 are separated by 394 nucleotides BACOVA_00255 and BACOVA_00256 are separated by 145 nucleotides
BACOVA_00253: BACOVA_00253 - hypothetical protein, at 36,222 to 36,485
_00253
BACOVA_00254: BACOVA_00254 - hypothetical protein, at 36,495 to 36,836
_00254
BACOVA_00255: BACOVA_00255 - transposase, IS4 family, at 37,231 to 38,133
_00255
BACOVA_00256: BACOVA_00256 - hypothetical protein, at 38,279 to 40,264
_00256
Position (kb) 37
38
39 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 36.241 kb on - strand at 36.245 kb on + strand at 36.246 kb on - strand at 36.249 kb on - strand, within BACOVA_00253 at 36.251 kb on + strand, within BACOVA_00253 at 36.251 kb on + strand, within BACOVA_00253 at 36.251 kb on + strand, within BACOVA_00253 at 36.251 kb on + strand, within BACOVA_00253 at 36.252 kb on - strand, within BACOVA_00253 at 36.252 kb on - strand, within BACOVA_00253 at 36.252 kb on - strand, within BACOVA_00253 at 36.280 kb on - strand, within BACOVA_00253 at 36.281 kb on + strand, within BACOVA_00253 at 36.352 kb on + strand, within BACOVA_00253 at 36.352 kb on + strand, within BACOVA_00253 at 36.452 kb on + strand, within BACOVA_00253 at 36.453 kb on - strand, within BACOVA_00253 at 36.466 kb on + strand at 36.466 kb on + strand at 36.467 kb on - strand at 36.483 kb on + strand at 36.494 kb on - strand at 36.564 kb on - strand, within BACOVA_00254 at 36.571 kb on + strand, within BACOVA_00254 at 36.575 kb on + strand, within BACOVA_00254 at 36.576 kb on - strand, within BACOVA_00254 at 36.576 kb on - strand, within BACOVA_00254 at 36.576 kb on - strand, within BACOVA_00254 at 36.589 kb on + strand, within BACOVA_00254 at 36.590 kb on - strand, within BACOVA_00254 at 36.605 kb on + strand, within BACOVA_00254 at 36.606 kb on - strand, within BACOVA_00254 at 36.606 kb on - strand, within BACOVA_00254 at 36.608 kb on + strand, within BACOVA_00254 at 36.628 kb on + strand, within BACOVA_00254 at 36.629 kb on - strand, within BACOVA_00254 at 36.629 kb on - strand, within BACOVA_00254 at 36.657 kb on - strand, within BACOVA_00254 at 36.671 kb on + strand, within BACOVA_00254 at 36.689 kb on + strand, within BACOVA_00254 at 36.689 kb on + strand, within BACOVA_00254 at 36.690 kb on - strand, within BACOVA_00254 at 36.692 kb on + strand, within BACOVA_00254 at 36.693 kb on - strand, within BACOVA_00254 at 36.698 kb on - strand, within BACOVA_00254 at 36.698 kb on - strand, within BACOVA_00254 at 36.725 kb on + strand, within BACOVA_00254 at 36.726 kb on - strand, within BACOVA_00254 at 36.726 kb on - strand, within BACOVA_00254 at 36.790 kb on + strand, within BACOVA_00254 at 36.802 kb on - strand at 36.805 kb on + strand at 36.806 kb on - strand at 36.815 kb on - strand at 36.820 kb on - strand at 36.820 kb on - strand at 36.855 kb on - strand at 36.858 kb on + strand at 36.865 kb on + strand at 36.880 kb on + strand at 36.893 kb on + strand at 36.904 kb on - strand at 36.915 kb on + strand at 36.915 kb on + strand at 36.918 kb on - strand at 36.918 kb on - strand at 36.925 kb on + strand at 37.057 kb on - strand at 37.078 kb on + strand at 37.098 kb on + strand at 37.098 kb on + strand at 37.098 kb on + strand at 37.099 kb on - strand at 37.104 kb on + strand at 37.145 kb on + strand at 37.146 kb on - strand at 37.153 kb on + strand at 37.154 kb on - strand at 37.165 kb on + strand at 37.166 kb on - strand at 37.166 kb on - strand at 37.232 kb on + strand at 37.249 kb on + strand at 37.249 kb on + strand at 37.250 kb on - strand at 37.294 kb on + strand at 37.294 kb on + strand at 37.295 kb on - strand at 37.295 kb on - strand at 37.295 kb on - strand at 37.297 kb on - strand at 37.297 kb on - strand at 37.363 kb on - strand, within BACOVA_00255 at 37.379 kb on + strand, within BACOVA_00255 at 37.380 kb on - strand, within BACOVA_00255 at 37.434 kb on + strand, within BACOVA_00255 at 37.435 kb on - strand, within BACOVA_00255 at 37.443 kb on + strand, within BACOVA_00255 at 37.443 kb on + strand, within BACOVA_00255 at 37.499 kb on + strand, within BACOVA_00255 at 37.500 kb on - strand, within BACOVA_00255 at 37.522 kb on - strand, within BACOVA_00255 at 37.523 kb on + strand, within BACOVA_00255 at 37.523 kb on + strand, within BACOVA_00255 at 37.524 kb on - strand, within BACOVA_00255 at 37.524 kb on - strand, within BACOVA_00255 at 37.542 kb on + strand, within BACOVA_00255 at 37.543 kb on - strand, within BACOVA_00255 at 37.543 kb on - strand, within BACOVA_00255 at 37.543 kb on - strand, within BACOVA_00255 at 37.543 kb on - strand, within BACOVA_00255 at 37.544 kb on + strand, within BACOVA_00255 at 37.613 kb on - strand, within BACOVA_00255 at 37.664 kb on + strand, within BACOVA_00255 at 37.664 kb on + strand, within BACOVA_00255 at 37.664 kb on + strand, within BACOVA_00255 at 37.665 kb on - strand, within BACOVA_00255 at 37.665 kb on - strand, within BACOVA_00255 at 37.666 kb on + strand, within BACOVA_00255 at 37.667 kb on - strand, within BACOVA_00255 at 37.667 kb on - strand, within BACOVA_00255 at 37.667 kb on - strand, within BACOVA_00255 at 37.672 kb on - strand, within BACOVA_00255 at 37.672 kb on - strand, within BACOVA_00255 at 37.672 kb on - strand, within BACOVA_00255 at 37.767 kb on + strand, within BACOVA_00255 at 37.833 kb on - strand, within BACOVA_00255 at 37.846 kb on - strand, within BACOVA_00255 at 37.850 kb on + strand, within BACOVA_00255 at 37.850 kb on + strand, within BACOVA_00255 at 37.857 kb on + strand, within BACOVA_00255 at 37.857 kb on + strand, within BACOVA_00255 at 38.033 kb on + strand, within BACOVA_00255 at 38.057 kb on - strand at 38.057 kb on - strand at 38.063 kb on + strand at 38.080 kb on - strand at 38.096 kb on - strand at 38.096 kb on - strand at 38.111 kb on + strand at 38.115 kb on + strand at 38.192 kb on + strand at 38.197 kb on - strand at 38.254 kb on - strand at 38.254 kb on - strand at 38.261 kb on + strand at 38.261 kb on + strand at 38.270 kb on + strand at 38.271 kb on - strand at 38.271 kb on - strand at 38.278 kb on - strand at 38.305 kb on - strand at 38.348 kb on - strand at 38.404 kb on + strand at 38.405 kb on - strand at 38.405 kb on - strand at 38.405 kb on - strand at 38.406 kb on + strand at 38.408 kb on + strand at 38.408 kb on + strand at 38.408 kb on + strand at 38.409 kb on - strand at 38.409 kb on - strand at 38.410 kb on + strand at 38.410 kb on + strand at 38.410 kb on + strand at 38.410 kb on + strand at 38.410 kb on + strand at 38.410 kb on + strand at 38.411 kb on - strand at 38.415 kb on + strand at 38.416 kb on - strand at 38.418 kb on - strand at 38.465 kb on - strand at 38.527 kb on - strand, within BACOVA_00256 at 38.537 kb on + strand, within BACOVA_00256 at 38.603 kb on + strand, within BACOVA_00256 at 38.674 kb on + strand, within BACOVA_00256 at 38.706 kb on - strand, within BACOVA_00256 at 38.838 kb on - strand, within BACOVA_00256 at 38.852 kb on - strand, within BACOVA_00256 at 38.894 kb on + strand, within BACOVA_00256 at 38.970 kb on - strand, within BACOVA_00256 at 39.008 kb on + strand, within BACOVA_00256
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 36,241 - -2.9 36,245 + +1.7 36,246 - +1.0 36,249 - BACOVA_00253 0.10 +0.6 36,251 + BACOVA_00253 0.11 +1.4 36,251 + BACOVA_00253 0.11 +2.1 36,251 + BACOVA_00253 0.11 -1.6 36,251 + BACOVA_00253 0.11 +0.8 36,252 - BACOVA_00253 0.11 -0.5 36,252 - BACOVA_00253 0.11 -2.3 36,252 - BACOVA_00253 0.11 -1.1 36,280 - BACOVA_00253 0.22 -1.4 36,281 + BACOVA_00253 0.22 +1.3 36,352 + BACOVA_00253 0.49 -0.8 36,352 + BACOVA_00253 0.49 -2.2 36,452 + BACOVA_00253 0.87 -1.0 36,453 - BACOVA_00253 0.88 -1.5 36,466 + +1.6 36,466 + -1.4 36,467 - -3.4 36,483 + -1.8 36,494 - -0.0 36,564 - BACOVA_00254 0.20 -0.4 36,571 + BACOVA_00254 0.22 +0.4 36,575 + BACOVA_00254 0.23 +1.2 36,576 - BACOVA_00254 0.24 -3.7 36,576 - BACOVA_00254 0.24 +2.1 36,576 - BACOVA_00254 0.24 -1.8 36,589 + BACOVA_00254 0.27 -4.1 36,590 - BACOVA_00254 0.28 -0.0 36,605 + BACOVA_00254 0.32 +0.7 36,606 - BACOVA_00254 0.32 -0.7 36,606 - BACOVA_00254 0.32 +0.1 36,608 + BACOVA_00254 0.33 +1.1 36,628 + BACOVA_00254 0.39 +0.1 36,629 - BACOVA_00254 0.39 +0.3 36,629 - BACOVA_00254 0.39 -1.2 36,657 - BACOVA_00254 0.47 +0.1 36,671 + BACOVA_00254 0.51 -2.6 36,689 + BACOVA_00254 0.57 -1.3 36,689 + BACOVA_00254 0.57 -1.0 36,690 - BACOVA_00254 0.57 +0.3 36,692 + BACOVA_00254 0.58 +0.0 36,693 - BACOVA_00254 0.58 -0.3 36,698 - BACOVA_00254 0.59 -3.1 36,698 - BACOVA_00254 0.59 -0.1 36,725 + BACOVA_00254 0.67 +0.4 36,726 - BACOVA_00254 0.68 -1.3 36,726 - BACOVA_00254 0.68 +0.8 36,790 + BACOVA_00254 0.86 -1.1 36,802 - +0.0 36,805 + -1.3 36,806 - +0.5 36,815 - +1.1 36,820 - -0.5 36,820 - -1.6 36,855 - +1.3 36,858 + +1.4 36,865 + -0.9 36,880 + -3.1 36,893 + +1.1 36,904 - +1.7 36,915 + +1.6 36,915 + -1.8 36,918 - -2.1 36,918 - +0.7 36,925 + +1.2 37,057 - -1.0 37,078 + -0.8 37,098 + +0.5 37,098 + +0.3 37,098 + +1.3 37,099 - -1.3 37,104 + -1.2 37,145 + -1.4 37,146 - -0.2 37,153 + +1.5 37,154 - -0.1 37,165 + -0.8 37,166 - +0.4 37,166 - -1.7 37,232 + +0.5 37,249 + -0.4 37,249 + +0.3 37,250 - -0.7 37,294 + -2.5 37,294 + -3.3 37,295 - +0.0 37,295 - -0.7 37,295 - +1.2 37,297 - -1.2 37,297 - -1.4 37,363 - BACOVA_00255 0.15 -0.1 37,379 + BACOVA_00255 0.16 -2.6 37,380 - BACOVA_00255 0.17 -0.2 37,434 + BACOVA_00255 0.22 +0.8 37,435 - BACOVA_00255 0.23 +0.1 37,443 + BACOVA_00255 0.23 +1.1 37,443 + BACOVA_00255 0.23 -2.2 37,499 + BACOVA_00255 0.30 -0.0 37,500 - BACOVA_00255 0.30 -3.2 37,522 - BACOVA_00255 0.32 -0.2 37,523 + BACOVA_00255 0.32 +0.1 37,523 + BACOVA_00255 0.32 -0.0 37,524 - BACOVA_00255 0.32 -0.3 37,524 - BACOVA_00255 0.32 -0.7 37,542 + BACOVA_00255 0.34 +1.4 37,543 - BACOVA_00255 0.35 +1.5 37,543 - BACOVA_00255 0.35 -0.2 37,543 - BACOVA_00255 0.35 +0.6 37,543 - BACOVA_00255 0.35 -2.1 37,544 + BACOVA_00255 0.35 +1.1 37,613 - BACOVA_00255 0.42 -0.9 37,664 + BACOVA_00255 0.48 -0.5 37,664 + BACOVA_00255 0.48 -3.4 37,664 + BACOVA_00255 0.48 +1.9 37,665 - BACOVA_00255 0.48 -0.7 37,665 - BACOVA_00255 0.48 -0.3 37,666 + BACOVA_00255 0.48 +0.6 37,667 - BACOVA_00255 0.48 -0.0 37,667 - BACOVA_00255 0.48 +0.2 37,667 - BACOVA_00255 0.48 -1.0 37,672 - BACOVA_00255 0.49 +0.5 37,672 - BACOVA_00255 0.49 -0.8 37,672 - BACOVA_00255 0.49 -0.8 37,767 + BACOVA_00255 0.59 +0.3 37,833 - BACOVA_00255 0.67 +1.6 37,846 - BACOVA_00255 0.68 -0.0 37,850 + BACOVA_00255 0.69 -0.7 37,850 + BACOVA_00255 0.69 -3.1 37,857 + BACOVA_00255 0.69 -2.1 37,857 + BACOVA_00255 0.69 -2.3 38,033 + BACOVA_00255 0.89 +0.1 38,057 - -0.9 38,057 - -1.7 38,063 + -2.3 38,080 - +1.4 38,096 - +1.2 38,096 - +0.8 38,111 + -0.5 38,115 + -1.0 38,192 + +3.2 38,197 - +0.1 38,254 - +1.3 38,254 - -1.4 38,261 + -3.6 38,261 + -0.5 38,270 + +2.4 38,271 - +1.9 38,271 - -2.1 38,278 - +2.3 38,305 - -1.6 38,348 - -4.8 38,404 + -0.7 38,405 - +0.9 38,405 - -0.5 38,405 - -1.4 38,406 + +0.6 38,408 + +0.7 38,408 + +0.2 38,408 + -0.2 38,409 - -2.0 38,409 - -1.2 38,410 + +0.3 38,410 + -1.7 38,410 + +0.1 38,410 + -2.6 38,410 + +0.6 38,410 + -3.1 38,411 - -0.1 38,415 + -0.3 38,416 - +2.0 38,418 - -1.2 38,465 - +0.5 38,527 - BACOVA_00256 0.12 +0.8 38,537 + BACOVA_00256 0.13 -0.3 38,603 + BACOVA_00256 0.16 +0.9 38,674 + BACOVA_00256 0.20 -1.5 38,706 - BACOVA_00256 0.22 -0.0 38,838 - BACOVA_00256 0.28 -0.8 38,852 - BACOVA_00256 0.29 -1.0 38,894 + BACOVA_00256 0.31 -0.7 38,970 - BACOVA_00256 0.35 -1.0 39,008 + BACOVA_00256 0.37 +0.3
Or see this region's nucleotide sequence