Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05201 and BACOVA_05202 are separated by 99 nucleotides BACOVA_05202 and BACOVA_05203 overlap by 8 nucleotides
BACOVA_05201: BACOVA_05201 - hypothetical protein, at 700,835 to 702,976
_05201
BACOVA_05202: BACOVA_05202 - hypothetical protein, at 703,076 to 703,195
_05202
BACOVA_05203: BACOVA_05203 - tetratricopeptide repeat protein, at 703,188 to 706,541
_05203
Position (kb) 703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 702.507 kb on + strand, within BACOVA_05201 at 702.829 kb on - strand at 702.933 kb on - strand at 702.982 kb on + strand at 702.983 kb on - strand at 702.983 kb on - strand at 702.992 kb on + strand at 702.993 kb on - strand at 702.996 kb on + strand at 702.996 kb on + strand at 703.000 kb on - strand at 703.010 kb on + strand at 703.011 kb on - strand at 703.029 kb on + strand at 703.059 kb on + strand at 703.139 kb on + strand, within BACOVA_05202 at 703.140 kb on - strand, within BACOVA_05202 at 703.167 kb on + strand, within BACOVA_05202 at 703.182 kb on + strand, within BACOVA_05202 at 703.183 kb on - strand, within BACOVA_05202 at 703.183 kb on - strand, within BACOVA_05202 at 703.185 kb on - strand at 703.187 kb on - strand at 703.194 kb on - strand at 703.295 kb on - strand at 703.295 kb on - strand at 703.434 kb on - strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.458 kb on - strand at 703.458 kb on - strand at 703.492 kb on - strand at 703.502 kb on - strand at 703.502 kb on - strand at 703.502 kb on - strand at 703.530 kb on + strand, within BACOVA_05203 at 703.541 kb on - strand, within BACOVA_05203 at 703.598 kb on - strand, within BACOVA_05203 at 703.618 kb on + strand, within BACOVA_05203 at 703.627 kb on - strand, within BACOVA_05203 at 703.632 kb on + strand, within BACOVA_05203 at 703.636 kb on + strand, within BACOVA_05203 at 703.743 kb on + strand, within BACOVA_05203 at 703.767 kb on - strand, within BACOVA_05203 at 703.819 kb on + strand, within BACOVA_05203 at 703.835 kb on + strand, within BACOVA_05203 at 703.895 kb on - strand, within BACOVA_05203 at 704.025 kb on - strand, within BACOVA_05203 at 704.039 kb on + strand, within BACOVA_05203 at 704.040 kb on - strand, within BACOVA_05203 at 704.043 kb on + strand, within BACOVA_05203 at 704.043 kb on + strand, within BACOVA_05203 at 704.063 kb on + strand, within BACOVA_05203 at 704.063 kb on + strand, within BACOVA_05203 at 704.064 kb on - strand, within BACOVA_05203 at 704.101 kb on + strand, within BACOVA_05203 at 704.101 kb on + strand, within BACOVA_05203 at 704.102 kb on - strand, within BACOVA_05203
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 702,507 + BACOVA_05201 0.78 -0.8 702,829 - -0.8 702,933 - +0.1 702,982 + +2.0 702,983 - -1.3 702,983 - -1.3 702,992 + -0.5 702,993 - -0.6 702,996 + -1.6 702,996 + -2.2 703,000 - -2.3 703,010 + +0.8 703,011 - -0.3 703,029 + -0.1 703,059 + +0.9 703,139 + BACOVA_05202 0.53 +0.7 703,140 - BACOVA_05202 0.53 -1.7 703,167 + BACOVA_05202 0.76 +0.2 703,182 + BACOVA_05202 0.88 -0.4 703,183 - BACOVA_05202 0.89 -0.8 703,183 - BACOVA_05202 0.89 -1.7 703,185 - -0.0 703,187 - -0.1 703,194 - -0.4 703,295 - -0.4 703,295 - -0.5 703,434 - +1.0 703,457 + -1.8 703,457 + -2.0 703,457 + +0.7 703,457 + +0.4 703,457 + -0.2 703,458 - +0.1 703,458 - +0.7 703,492 - +0.1 703,502 - +0.7 703,502 - +1.0 703,502 - +0.3 703,530 + BACOVA_05203 0.10 +1.4 703,541 - BACOVA_05203 0.11 +0.9 703,598 - BACOVA_05203 0.12 -3.0 703,618 + BACOVA_05203 0.13 -0.1 703,627 - BACOVA_05203 0.13 +0.1 703,632 + BACOVA_05203 0.13 +0.2 703,636 + BACOVA_05203 0.13 -2.3 703,743 + BACOVA_05203 0.17 +0.7 703,767 - BACOVA_05203 0.17 +0.0 703,819 + BACOVA_05203 0.19 -1.0 703,835 + BACOVA_05203 0.19 +0.2 703,895 - BACOVA_05203 0.21 +0.9 704,025 - BACOVA_05203 0.25 -0.5 704,039 + BACOVA_05203 0.25 +0.5 704,040 - BACOVA_05203 0.25 -1.7 704,043 + BACOVA_05203 0.25 -0.7 704,043 + BACOVA_05203 0.25 +2.1 704,063 + BACOVA_05203 0.26 -0.5 704,063 + BACOVA_05203 0.26 -1.1 704,064 - BACOVA_05203 0.26 -0.9 704,101 + BACOVA_05203 0.27 +0.4 704,101 + BACOVA_05203 0.27 +1.4 704,102 - BACOVA_05203 0.27 -1.5
Or see this region's nucleotide sequence