Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04727 and BACOVA_04728 are separated by 14 nucleotides BACOVA_04728 and BACOVA_04729 are separated by 14 nucleotides BACOVA_04729 and BACOVA_04730 overlap by 20 nucleotides BACOVA_04730 and BACOVA_04731 overlap by 4 nucleotides
BACOVA_04727: BACOVA_04727 - hypothetical protein, at 90,974 to 91,639
_04727
BACOVA_04728: BACOVA_04728 - hypothetical protein, at 91,654 to 92,337
_04728
BACOVA_04729: BACOVA_04729 - hypothetical protein, at 92,352 to 93,041
_04729
BACOVA_04730: BACOVA_04730 - hypothetical protein, at 93,022 to 93,519
_04730
BACOVA_04731: BACOVA_04731 - hypothetical protein, at 93,516 to 94,904
_04731
Position (kb) 92
93
94 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 91.612 kb on - strand at 91.639 kb on + strand at 91.708 kb on + strand at 91.708 kb on + strand at 91.778 kb on + strand, within BACOVA_04728 at 91.846 kb on + strand, within BACOVA_04728 at 92.031 kb on + strand, within BACOVA_04728 at 92.067 kb on - strand, within BACOVA_04728 at 92.068 kb on + strand, within BACOVA_04728 at 92.089 kb on + strand, within BACOVA_04728 at 92.111 kb on + strand, within BACOVA_04728 at 92.237 kb on + strand, within BACOVA_04728 at 92.309 kb on - strand at 92.317 kb on + strand at 92.354 kb on - strand at 92.467 kb on + strand, within BACOVA_04729 at 92.467 kb on + strand, within BACOVA_04729 at 92.468 kb on - strand, within BACOVA_04729 at 92.470 kb on + strand, within BACOVA_04729 at 92.471 kb on - strand, within BACOVA_04729 at 92.475 kb on + strand, within BACOVA_04729 at 92.497 kb on - strand, within BACOVA_04729 at 92.571 kb on - strand, within BACOVA_04729 at 92.647 kb on + strand, within BACOVA_04729 at 92.664 kb on + strand, within BACOVA_04729 at 92.749 kb on + strand, within BACOVA_04729 at 92.811 kb on - strand, within BACOVA_04729 at 92.812 kb on + strand, within BACOVA_04729 at 92.904 kb on + strand, within BACOVA_04729 at 92.904 kb on + strand, within BACOVA_04729 at 93.024 kb on - strand at 93.041 kb on + strand at 93.041 kb on + strand at 93.042 kb on - strand at 93.042 kb on - strand at 93.043 kb on + strand at 93.114 kb on + strand, within BACOVA_04730 at 93.228 kb on - strand, within BACOVA_04730 at 93.228 kb on - strand, within BACOVA_04730 at 93.228 kb on - strand, within BACOVA_04730 at 93.240 kb on - strand, within BACOVA_04730 at 93.240 kb on - strand, within BACOVA_04730 at 93.240 kb on - strand, within BACOVA_04730 at 93.277 kb on - strand, within BACOVA_04730 at 93.299 kb on + strand, within BACOVA_04730 at 93.299 kb on + strand, within BACOVA_04730 at 93.317 kb on + strand, within BACOVA_04730 at 93.338 kb on - strand, within BACOVA_04730 at 93.405 kb on - strand, within BACOVA_04730 at 93.405 kb on - strand, within BACOVA_04730 at 93.405 kb on - strand, within BACOVA_04730 at 93.428 kb on - strand, within BACOVA_04730 at 93.637 kb on + strand at 93.638 kb on - strand at 93.641 kb on + strand at 93.642 kb on - strand at 93.721 kb on + strand, within BACOVA_04731 at 93.721 kb on + strand, within BACOVA_04731 at 93.721 kb on + strand, within BACOVA_04731 at 93.737 kb on + strand, within BACOVA_04731 at 93.753 kb on + strand, within BACOVA_04731 at 93.818 kb on - strand, within BACOVA_04731 at 93.858 kb on + strand, within BACOVA_04731 at 93.859 kb on - strand, within BACOVA_04731 at 93.859 kb on - strand, within BACOVA_04731 at 93.859 kb on - strand, within BACOVA_04731 at 93.859 kb on - strand, within BACOVA_04731 at 93.953 kb on - strand, within BACOVA_04731
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 91,612 - -0.3 91,639 + +0.8 91,708 + +2.4 91,708 + +0.4 91,778 + BACOVA_04728 0.18 +0.3 91,846 + BACOVA_04728 0.28 -1.0 92,031 + BACOVA_04728 0.55 -0.2 92,067 - BACOVA_04728 0.60 -1.9 92,068 + BACOVA_04728 0.61 -0.2 92,089 + BACOVA_04728 0.64 +0.7 92,111 + BACOVA_04728 0.67 -0.0 92,237 + BACOVA_04728 0.85 -1.2 92,309 - -0.8 92,317 + -0.3 92,354 - -1.5 92,467 + BACOVA_04729 0.17 +0.8 92,467 + BACOVA_04729 0.17 -0.1 92,468 - BACOVA_04729 0.17 -1.3 92,470 + BACOVA_04729 0.17 -0.3 92,471 - BACOVA_04729 0.17 -0.6 92,475 + BACOVA_04729 0.18 -1.1 92,497 - BACOVA_04729 0.21 -2.5 92,571 - BACOVA_04729 0.32 +1.3 92,647 + BACOVA_04729 0.43 +0.0 92,664 + BACOVA_04729 0.45 -0.5 92,749 + BACOVA_04729 0.58 +0.1 92,811 - BACOVA_04729 0.67 -1.9 92,812 + BACOVA_04729 0.67 -0.3 92,904 + BACOVA_04729 0.80 +1.0 92,904 + BACOVA_04729 0.80 +0.2 93,024 - -0.8 93,041 + +0.5 93,041 + -0.9 93,042 - +1.3 93,042 - -1.0 93,043 + -0.2 93,114 + BACOVA_04730 0.18 +0.0 93,228 - BACOVA_04730 0.41 +0.1 93,228 - BACOVA_04730 0.41 -1.5 93,228 - BACOVA_04730 0.41 -1.9 93,240 - BACOVA_04730 0.44 +0.0 93,240 - BACOVA_04730 0.44 -1.0 93,240 - BACOVA_04730 0.44 +0.7 93,277 - BACOVA_04730 0.51 -0.3 93,299 + BACOVA_04730 0.56 -0.3 93,299 + BACOVA_04730 0.56 -0.2 93,317 + BACOVA_04730 0.59 -1.3 93,338 - BACOVA_04730 0.63 +0.1 93,405 - BACOVA_04730 0.77 -0.7 93,405 - BACOVA_04730 0.77 -1.2 93,405 - BACOVA_04730 0.77 -1.6 93,428 - BACOVA_04730 0.82 -2.8 93,637 + -0.7 93,638 - -0.1 93,641 + -1.3 93,642 - -1.7 93,721 + BACOVA_04731 0.15 +0.2 93,721 + BACOVA_04731 0.15 -0.0 93,721 + BACOVA_04731 0.15 +1.6 93,737 + BACOVA_04731 0.16 -0.6 93,753 + BACOVA_04731 0.17 -0.9 93,818 - BACOVA_04731 0.22 -1.2 93,858 + BACOVA_04731 0.25 -0.7 93,859 - BACOVA_04731 0.25 -0.9 93,859 - BACOVA_04731 0.25 -2.1 93,859 - BACOVA_04731 0.25 -0.3 93,859 - BACOVA_04731 0.25 +0.2 93,953 - BACOVA_04731 0.31 +1.8
Or see this region's nucleotide sequence