Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04208 and BACOVA_04209 overlap by 19 nucleotides BACOVA_04209 and BACOVA_04210 are separated by 1 nucleotides BACOVA_04210 and BACOVA_04211 are separated by 212 nucleotides
BACOVA_04208: BACOVA_04208 - hypothetical protein, at 86,168 to 87,403
_04208
BACOVA_04209: BACOVA_04209 - hypothetical protein, at 87,385 to 87,645
_04209
BACOVA_04210: BACOVA_04210 - histidinol phosphate phosphatase HisJ family, at 87,647 to 88,429
_04210
BACOVA_04211: BACOVA_04211 - ABC transporter, ATP-binding protein, at 88,642 to 90,510
_04211
Position (kb) 87
88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 86.658 kb on - strand, within BACOVA_04208 at 86.662 kb on - strand, within BACOVA_04208 at 86.666 kb on - strand, within BACOVA_04208 at 86.695 kb on + strand, within BACOVA_04208 at 86.740 kb on - strand, within BACOVA_04208 at 86.907 kb on + strand, within BACOVA_04208 at 86.907 kb on + strand, within BACOVA_04208 at 86.932 kb on - strand, within BACOVA_04208 at 86.934 kb on + strand, within BACOVA_04208 at 86.935 kb on - strand, within BACOVA_04208 at 86.969 kb on - strand, within BACOVA_04208 at 86.974 kb on - strand, within BACOVA_04208 at 86.976 kb on + strand, within BACOVA_04208 at 86.977 kb on - strand, within BACOVA_04208 at 87.031 kb on + strand, within BACOVA_04208 at 87.072 kb on + strand, within BACOVA_04208 at 87.073 kb on - strand, within BACOVA_04208 at 87.095 kb on + strand, within BACOVA_04208 at 87.095 kb on + strand, within BACOVA_04208 at 87.096 kb on - strand, within BACOVA_04208 at 87.096 kb on - strand, within BACOVA_04208 at 87.097 kb on + strand, within BACOVA_04208 at 87.098 kb on - strand, within BACOVA_04208 at 87.098 kb on - strand, within BACOVA_04208 at 87.139 kb on - strand, within BACOVA_04208 at 87.139 kb on - strand, within BACOVA_04208 at 87.165 kb on + strand, within BACOVA_04208 at 87.204 kb on - strand, within BACOVA_04208 at 87.206 kb on + strand, within BACOVA_04208 at 87.207 kb on - strand, within BACOVA_04208 at 87.207 kb on - strand, within BACOVA_04208 at 87.242 kb on + strand, within BACOVA_04208 at 87.245 kb on - strand, within BACOVA_04208 at 87.247 kb on + strand, within BACOVA_04208 at 87.248 kb on - strand, within BACOVA_04208 at 87.250 kb on + strand, within BACOVA_04208 at 87.251 kb on - strand, within BACOVA_04208 at 87.251 kb on - strand, within BACOVA_04208 at 87.251 kb on - strand, within BACOVA_04208 at 87.283 kb on + strand at 87.283 kb on + strand at 87.329 kb on - strand at 87.329 kb on - strand at 87.332 kb on - strand at 87.332 kb on - strand at 87.343 kb on + strand at 87.347 kb on + strand at 87.348 kb on - strand at 87.429 kb on + strand, within BACOVA_04209 at 87.455 kb on + strand, within BACOVA_04209 at 87.456 kb on - strand, within BACOVA_04209 at 87.460 kb on - strand, within BACOVA_04209 at 87.460 kb on - strand, within BACOVA_04209 at 87.507 kb on + strand, within BACOVA_04209 at 87.507 kb on + strand, within BACOVA_04209 at 87.508 kb on - strand, within BACOVA_04209 at 87.530 kb on + strand, within BACOVA_04209 at 87.544 kb on + strand, within BACOVA_04209 at 87.545 kb on - strand, within BACOVA_04209 at 87.587 kb on + strand, within BACOVA_04209 at 87.588 kb on - strand, within BACOVA_04209 at 87.643 kb on + strand at 87.643 kb on + strand at 87.643 kb on + strand at 87.644 kb on - strand at 87.644 kb on - strand at 87.648 kb on + strand at 87.648 kb on + strand at 87.689 kb on + strand at 87.700 kb on + strand at 87.819 kb on + strand, within BACOVA_04210 at 87.820 kb on - strand, within BACOVA_04210 at 87.825 kb on + strand, within BACOVA_04210 at 87.842 kb on - strand, within BACOVA_04210 at 87.880 kb on + strand, within BACOVA_04210 at 87.880 kb on + strand, within BACOVA_04210 at 87.880 kb on + strand, within BACOVA_04210 at 87.881 kb on - strand, within BACOVA_04210 at 87.881 kb on - strand, within BACOVA_04210 at 87.973 kb on + strand, within BACOVA_04210 at 87.973 kb on + strand, within BACOVA_04210 at 87.974 kb on - strand, within BACOVA_04210 at 87.974 kb on - strand, within BACOVA_04210 at 87.976 kb on - strand, within BACOVA_04210 at 88.043 kb on - strand, within BACOVA_04210 at 88.043 kb on - strand, within BACOVA_04210 at 88.043 kb on - strand, within BACOVA_04210 at 88.045 kb on - strand, within BACOVA_04210 at 88.048 kb on - strand, within BACOVA_04210 at 88.092 kb on - strand, within BACOVA_04210 at 88.092 kb on - strand, within BACOVA_04210 at 88.126 kb on + strand, within BACOVA_04210 at 88.127 kb on - strand, within BACOVA_04210 at 88.159 kb on + strand, within BACOVA_04210 at 88.159 kb on + strand, within BACOVA_04210 at 88.159 kb on + strand, within BACOVA_04210 at 88.159 kb on + strand, within BACOVA_04210 at 88.160 kb on - strand, within BACOVA_04210 at 88.270 kb on + strand, within BACOVA_04210 at 88.270 kb on + strand, within BACOVA_04210 at 88.278 kb on + strand, within BACOVA_04210 at 88.278 kb on + strand, within BACOVA_04210 at 88.467 kb on + strand at 88.475 kb on + strand at 88.489 kb on + strand at 88.490 kb on - strand at 88.490 kb on - strand at 88.494 kb on + strand at 88.495 kb on - strand at 88.495 kb on - strand at 88.496 kb on + strand at 88.496 kb on + strand at 88.510 kb on - strand at 88.512 kb on - strand at 88.512 kb on - strand at 88.515 kb on - strand at 88.515 kb on - strand at 88.521 kb on - strand at 88.540 kb on + strand at 88.540 kb on + strand at 88.540 kb on + strand at 88.544 kb on - strand at 88.549 kb on - strand at 88.549 kb on - strand at 88.550 kb on + strand at 88.550 kb on + strand at 88.551 kb on - strand at 88.551 kb on - strand at 88.599 kb on - strand at 88.629 kb on - strand at 88.629 kb on - strand at 88.629 kb on - strand at 88.629 kb on - strand at 88.630 kb on + strand at 88.631 kb on - strand at 88.695 kb on + strand at 88.695 kb on + strand at 88.855 kb on - strand, within BACOVA_04211 at 88.944 kb on + strand, within BACOVA_04211 at 88.956 kb on + strand, within BACOVA_04211 at 88.959 kb on - strand, within BACOVA_04211 at 88.981 kb on - strand, within BACOVA_04211 at 89.015 kb on - strand, within BACOVA_04211 at 89.017 kb on + strand, within BACOVA_04211 at 89.018 kb on - strand, within BACOVA_04211 at 89.033 kb on + strand, within BACOVA_04211 at 89.110 kb on - strand, within BACOVA_04211 at 89.155 kb on - strand, within BACOVA_04211 at 89.169 kb on + strand, within BACOVA_04211 at 89.169 kb on + strand, within BACOVA_04211 at 89.170 kb on - strand, within BACOVA_04211 at 89.178 kb on - strand, within BACOVA_04211 at 89.208 kb on + strand, within BACOVA_04211 at 89.210 kb on + strand, within BACOVA_04211 at 89.216 kb on + strand, within BACOVA_04211 at 89.216 kb on + strand, within BACOVA_04211 at 89.216 kb on + strand, within BACOVA_04211 at 89.216 kb on + strand, within BACOVA_04211 at 89.217 kb on - strand, within BACOVA_04211 at 89.217 kb on - strand, within BACOVA_04211 at 89.217 kb on - strand, within BACOVA_04211 at 89.217 kb on - strand, within BACOVA_04211 at 89.217 kb on - strand, within BACOVA_04211 at 89.217 kb on - strand, within BACOVA_04211 at 89.217 kb on - strand, within BACOVA_04211 at 89.217 kb on - strand, within BACOVA_04211 at 89.217 kb on - strand, within BACOVA_04211 at 89.217 kb on - strand, within BACOVA_04211 at 89.221 kb on - strand, within BACOVA_04211 at 89.221 kb on - strand, within BACOVA_04211 at 89.369 kb on + strand, within BACOVA_04211
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 86,658 - BACOVA_04208 0.40 +0.9 86,662 - BACOVA_04208 0.40 +0.1 86,666 - BACOVA_04208 0.40 -0.3 86,695 + BACOVA_04208 0.43 -0.2 86,740 - BACOVA_04208 0.46 +0.5 86,907 + BACOVA_04208 0.60 -1.8 86,907 + BACOVA_04208 0.60 +1.0 86,932 - BACOVA_04208 0.62 -0.9 86,934 + BACOVA_04208 0.62 -3.4 86,935 - BACOVA_04208 0.62 -1.1 86,969 - BACOVA_04208 0.65 -0.1 86,974 - BACOVA_04208 0.65 +2.7 86,976 + BACOVA_04208 0.65 +0.9 86,977 - BACOVA_04208 0.65 +1.8 87,031 + BACOVA_04208 0.70 +2.1 87,072 + BACOVA_04208 0.73 +0.0 87,073 - BACOVA_04208 0.73 -0.4 87,095 + BACOVA_04208 0.75 -0.1 87,095 + BACOVA_04208 0.75 +0.9 87,096 - BACOVA_04208 0.75 +1.1 87,096 - BACOVA_04208 0.75 -3.0 87,097 + BACOVA_04208 0.75 +0.7 87,098 - BACOVA_04208 0.75 +0.6 87,098 - BACOVA_04208 0.75 -0.7 87,139 - BACOVA_04208 0.79 +0.9 87,139 - BACOVA_04208 0.79 -2.3 87,165 + BACOVA_04208 0.81 -1.4 87,204 - BACOVA_04208 0.84 +0.2 87,206 + BACOVA_04208 0.84 +0.4 87,207 - BACOVA_04208 0.84 -0.7 87,207 - BACOVA_04208 0.84 -0.1 87,242 + BACOVA_04208 0.87 -0.0 87,245 - BACOVA_04208 0.87 +0.3 87,247 + BACOVA_04208 0.87 -0.1 87,248 - BACOVA_04208 0.87 -0.2 87,250 + BACOVA_04208 0.88 +0.3 87,251 - BACOVA_04208 0.88 -3.5 87,251 - BACOVA_04208 0.88 -0.3 87,251 - BACOVA_04208 0.88 -2.0 87,283 + -0.5 87,283 + +0.9 87,329 - -1.4 87,329 - +0.4 87,332 - -0.9 87,332 - -0.2 87,343 + +0.8 87,347 + +0.8 87,348 - -0.2 87,429 + BACOVA_04209 0.17 +0.9 87,455 + BACOVA_04209 0.27 -2.1 87,456 - BACOVA_04209 0.27 +0.4 87,460 - BACOVA_04209 0.29 -0.5 87,460 - BACOVA_04209 0.29 -0.3 87,507 + BACOVA_04209 0.47 -0.4 87,507 + BACOVA_04209 0.47 +0.7 87,508 - BACOVA_04209 0.47 +0.5 87,530 + BACOVA_04209 0.56 +0.1 87,544 + BACOVA_04209 0.61 -1.9 87,545 - BACOVA_04209 0.61 +0.5 87,587 + BACOVA_04209 0.77 +0.4 87,588 - BACOVA_04209 0.78 +0.2 87,643 + +0.8 87,643 + -1.3 87,643 + -2.0 87,644 - +0.3 87,644 - -0.7 87,648 + -1.2 87,648 + -0.5 87,689 + -1.8 87,700 + +2.4 87,819 + BACOVA_04210 0.22 -0.2 87,820 - BACOVA_04210 0.22 +0.2 87,825 + BACOVA_04210 0.23 -0.3 87,842 - BACOVA_04210 0.25 +0.6 87,880 + BACOVA_04210 0.30 -1.3 87,880 + BACOVA_04210 0.30 +0.1 87,880 + BACOVA_04210 0.30 -1.5 87,881 - BACOVA_04210 0.30 -0.0 87,881 - BACOVA_04210 0.30 +0.3 87,973 + BACOVA_04210 0.42 +0.1 87,973 + BACOVA_04210 0.42 +0.8 87,974 - BACOVA_04210 0.42 -0.6 87,974 - BACOVA_04210 0.42 -1.5 87,976 - BACOVA_04210 0.42 +0.7 88,043 - BACOVA_04210 0.51 +1.0 88,043 - BACOVA_04210 0.51 -0.9 88,043 - BACOVA_04210 0.51 +0.3 88,045 - BACOVA_04210 0.51 -0.4 88,048 - BACOVA_04210 0.51 -0.1 88,092 - BACOVA_04210 0.57 +0.5 88,092 - BACOVA_04210 0.57 +2.4 88,126 + BACOVA_04210 0.61 -0.7 88,127 - BACOVA_04210 0.61 +0.5 88,159 + BACOVA_04210 0.65 -0.6 88,159 + BACOVA_04210 0.65 -0.4 88,159 + BACOVA_04210 0.65 -1.1 88,159 + BACOVA_04210 0.65 -0.2 88,160 - BACOVA_04210 0.66 +1.0 88,270 + BACOVA_04210 0.80 +0.5 88,270 + BACOVA_04210 0.80 +0.1 88,278 + BACOVA_04210 0.81 +0.2 88,278 + BACOVA_04210 0.81 -0.8 88,467 + -0.6 88,475 + +0.5 88,489 + +0.4 88,490 - -0.3 88,490 - +1.0 88,494 + +0.5 88,495 - +0.2 88,495 - +1.1 88,496 + -2.4 88,496 + +0.4 88,510 - -1.4 88,512 - -0.4 88,512 - -2.0 88,515 - -2.1 88,515 - +1.1 88,521 - -0.3 88,540 + -1.2 88,540 + +1.1 88,540 + -0.7 88,544 - +0.6 88,549 - -0.2 88,549 - -1.2 88,550 + -0.1 88,550 + +0.3 88,551 - +0.0 88,551 - -0.9 88,599 - +1.7 88,629 - +0.1 88,629 - -0.8 88,629 - +0.7 88,629 - +1.1 88,630 + +2.7 88,631 - -1.1 88,695 + +0.9 88,695 + -0.5 88,855 - BACOVA_04211 0.11 +0.4 88,944 + BACOVA_04211 0.16 -0.0 88,956 + BACOVA_04211 0.17 -2.2 88,959 - BACOVA_04211 0.17 -0.3 88,981 - BACOVA_04211 0.18 -0.5 89,015 - BACOVA_04211 0.20 +0.5 89,017 + BACOVA_04211 0.20 +0.9 89,018 - BACOVA_04211 0.20 -0.2 89,033 + BACOVA_04211 0.21 +1.2 89,110 - BACOVA_04211 0.25 -1.2 89,155 - BACOVA_04211 0.27 -0.7 89,169 + BACOVA_04211 0.28 -1.1 89,169 + BACOVA_04211 0.28 +0.2 89,170 - BACOVA_04211 0.28 -0.9 89,178 - BACOVA_04211 0.29 +0.4 89,208 + BACOVA_04211 0.30 -0.1 89,210 + BACOVA_04211 0.30 -0.9 89,216 + BACOVA_04211 0.31 -1.4 89,216 + BACOVA_04211 0.31 -0.2 89,216 + BACOVA_04211 0.31 +0.8 89,216 + BACOVA_04211 0.31 -1.7 89,217 - BACOVA_04211 0.31 -0.1 89,217 - BACOVA_04211 0.31 +0.1 89,217 - BACOVA_04211 0.31 +0.6 89,217 - BACOVA_04211 0.31 +0.2 89,217 - BACOVA_04211 0.31 -0.9 89,217 - BACOVA_04211 0.31 +0.3 89,217 - BACOVA_04211 0.31 -0.9 89,217 - BACOVA_04211 0.31 -0.8 89,217 - BACOVA_04211 0.31 -1.2 89,217 - BACOVA_04211 0.31 +0.9 89,221 - BACOVA_04211 0.31 +0.6 89,221 - BACOVA_04211 0.31 -0.1 89,369 + BACOVA_04211 0.39 +0.2
Or see this region's nucleotide sequence