Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04098

Experiment: Peptone 2.5 mg/mL (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04097 and BACOVA_04098 are separated by 27 nucleotidesBACOVA_04098 and BACOVA_04099 are separated by 17 nucleotides BACOVA_04097: BACOVA_04097 - hypothetical protein, at 430,011 to 431,150 _04097 BACOVA_04098: BACOVA_04098 - hypothetical protein, at 431,178 to 432,728 _04098 BACOVA_04099: BACOVA_04099 - TonB-linked outer membrane protein, SusC/RagA family, at 432,746 to 436,048 _04099 Position (kb) 431 432 433Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 430.187 kb on + strand, within BACOVA_04097at 430.188 kb on - strand, within BACOVA_04097at 430.300 kb on + strand, within BACOVA_04097at 430.301 kb on - strand, within BACOVA_04097at 430.301 kb on - strand, within BACOVA_04097at 430.326 kb on + strand, within BACOVA_04097at 430.382 kb on + strand, within BACOVA_04097at 430.383 kb on - strand, within BACOVA_04097at 430.383 kb on - strand, within BACOVA_04097at 430.383 kb on - strand, within BACOVA_04097at 430.433 kb on + strand, within BACOVA_04097at 430.471 kb on - strand, within BACOVA_04097at 430.502 kb on - strand, within BACOVA_04097at 430.553 kb on + strand, within BACOVA_04097at 430.554 kb on - strand, within BACOVA_04097at 430.556 kb on + strand, within BACOVA_04097at 430.609 kb on + strand, within BACOVA_04097at 430.610 kb on - strand, within BACOVA_04097at 430.642 kb on + strand, within BACOVA_04097at 430.643 kb on - strand, within BACOVA_04097at 430.643 kb on - strand, within BACOVA_04097at 430.674 kb on - strand, within BACOVA_04097at 430.761 kb on - strand, within BACOVA_04097at 430.826 kb on + strand, within BACOVA_04097at 430.868 kb on + strand, within BACOVA_04097at 430.905 kb on + strand, within BACOVA_04097at 430.906 kb on - strand, within BACOVA_04097at 430.910 kb on + strand, within BACOVA_04097at 430.940 kb on + strand, within BACOVA_04097at 430.940 kb on + strand, within BACOVA_04097at 430.941 kb on - strand, within BACOVA_04097at 431.003 kb on + strand, within BACOVA_04097at 431.004 kb on - strand, within BACOVA_04097at 431.006 kb on - strand, within BACOVA_04097at 431.023 kb on + strand, within BACOVA_04097at 431.026 kb on + strand, within BACOVA_04097at 431.026 kb on + strand, within BACOVA_04097at 431.027 kb on - strand, within BACOVA_04097at 431.027 kb on - strand, within BACOVA_04097at 431.027 kb on - strand, within BACOVA_04097at 431.121 kb on + strandat 431.121 kb on + strandat 431.122 kb on - strandat 431.122 kb on - strandat 431.130 kb on + strandat 431.170 kb on + strandat 431.171 kb on - strandat 431.174 kb on + strandat 431.174 kb on + strandat 431.199 kb on + strandat 431.279 kb on + strandat 431.280 kb on - strandat 431.335 kb on - strand, within BACOVA_04098at 431.403 kb on + strand, within BACOVA_04098at 431.461 kb on - strand, within BACOVA_04098at 431.501 kb on + strand, within BACOVA_04098at 431.507 kb on + strand, within BACOVA_04098at 431.550 kb on + strand, within BACOVA_04098at 431.621 kb on + strand, within BACOVA_04098at 431.741 kb on + strand, within BACOVA_04098at 431.742 kb on - strand, within BACOVA_04098at 431.798 kb on + strand, within BACOVA_04098at 431.804 kb on + strand, within BACOVA_04098at 431.805 kb on - strand, within BACOVA_04098at 431.805 kb on - strand, within BACOVA_04098at 431.805 kb on - strand, within BACOVA_04098at 431.808 kb on + strand, within BACOVA_04098at 431.812 kb on + strand, within BACOVA_04098at 431.813 kb on - strand, within BACOVA_04098at 431.813 kb on - strand, within BACOVA_04098at 431.813 kb on - strand, within BACOVA_04098at 431.816 kb on + strand, within BACOVA_04098at 431.816 kb on + strand, within BACOVA_04098at 431.862 kb on - strand, within BACOVA_04098at 431.887 kb on + strand, within BACOVA_04098at 431.887 kb on + strand, within BACOVA_04098at 431.893 kb on - strand, within BACOVA_04098at 431.897 kb on + strand, within BACOVA_04098at 431.928 kb on + strand, within BACOVA_04098at 431.929 kb on - strand, within BACOVA_04098at 431.951 kb on + strand, within BACOVA_04098at 431.951 kb on + strand, within BACOVA_04098at 432.011 kb on + strand, within BACOVA_04098at 432.084 kb on + strand, within BACOVA_04098at 432.085 kb on - strand, within BACOVA_04098at 432.181 kb on + strand, within BACOVA_04098at 432.185 kb on - strand, within BACOVA_04098at 432.222 kb on + strand, within BACOVA_04098at 432.222 kb on + strand, within BACOVA_04098at 432.225 kb on + strand, within BACOVA_04098at 432.225 kb on + strand, within BACOVA_04098at 432.225 kb on + strand, within BACOVA_04098at 432.225 kb on + strand, within BACOVA_04098at 432.235 kb on + strand, within BACOVA_04098at 432.256 kb on + strand, within BACOVA_04098at 432.257 kb on - strand, within BACOVA_04098at 432.257 kb on - strand, within BACOVA_04098at 432.257 kb on - strand, within BACOVA_04098at 432.261 kb on + strand, within BACOVA_04098at 432.265 kb on + strand, within BACOVA_04098at 432.342 kb on + strand, within BACOVA_04098at 432.347 kb on + strand, within BACOVA_04098at 432.365 kb on - strand, within BACOVA_04098at 432.365 kb on - strand, within BACOVA_04098at 432.380 kb on + strand, within BACOVA_04098at 432.415 kb on - strand, within BACOVA_04098at 432.502 kb on + strand, within BACOVA_04098at 432.510 kb on + strand, within BACOVA_04098at 432.510 kb on + strand, within BACOVA_04098at 432.511 kb on - strand, within BACOVA_04098at 432.515 kb on - strand, within BACOVA_04098at 432.523 kb on - strand, within BACOVA_04098at 432.591 kb on - strandat 432.591 kb on - strandat 432.642 kb on - strandat 432.644 kb on + strandat 432.644 kb on + strandat 432.644 kb on + strandat 432.645 kb on - strandat 432.647 kb on - strandat 432.647 kb on - strandat 432.787 kb on + strandat 432.788 kb on - strandat 432.802 kb on - strandat 432.814 kb on + strandat 432.814 kb on + strandat 432.815 kb on - strandat 432.816 kb on + strandat 432.865 kb on + strandat 432.871 kb on - strandat 432.871 kb on - strandat 432.882 kb on - strandat 432.886 kb on + strandat 432.894 kb on - strandat 432.946 kb on + strandat 432.948 kb on + strandat 432.975 kb on - strandat 432.989 kb on - strandat 432.989 kb on - strandat 432.990 kb on + strandat 432.992 kb on + strandat 432.996 kb on + strandat 432.999 kb on + strandat 433.031 kb on - strandat 433.039 kb on - strandat 433.066 kb on + strandat 433.076 kb on + strandat 433.077 kb on - strand, within BACOVA_04099at 433.077 kb on - strand, within BACOVA_04099at 433.078 kb on + strand, within BACOVA_04099at 433.078 kb on + strand, within BACOVA_04099at 433.079 kb on - strand, within BACOVA_04099at 433.125 kb on + strand, within BACOVA_04099at 433.126 kb on - strand, within BACOVA_04099at 433.130 kb on + strand, within BACOVA_04099at 433.135 kb on + strand, within BACOVA_04099at 433.136 kb on - strand, within BACOVA_04099at 433.136 kb on - strand, within BACOVA_04099at 433.144 kb on + strand, within BACOVA_04099at 433.158 kb on - strand, within BACOVA_04099at 433.181 kb on + strand, within BACOVA_04099at 433.182 kb on - strand, within BACOVA_04099at 433.204 kb on + strand, within BACOVA_04099at 433.239 kb on - strand, within BACOVA_04099at 433.289 kb on + strand, within BACOVA_04099at 433.295 kb on - strand, within BACOVA_04099at 433.313 kb on + strand, within BACOVA_04099at 433.314 kb on - strand, within BACOVA_04099at 433.315 kb on + strand, within BACOVA_04099at 433.318 kb on + strand, within BACOVA_04099at 433.325 kb on - strand, within BACOVA_04099at 433.347 kb on + strand, within BACOVA_04099at 433.347 kb on + strand, within BACOVA_04099at 433.349 kb on + strand, within BACOVA_04099at 433.350 kb on - strand, within BACOVA_04099at 433.353 kb on + strand, within BACOVA_04099at 433.353 kb on + strand, within BACOVA_04099at 433.353 kb on + strand, within BACOVA_04099at 433.354 kb on - strand, within BACOVA_04099at 433.354 kb on - strand, within BACOVA_04099at 433.358 kb on - strand, within BACOVA_04099at 433.358 kb on - strand, within BACOVA_04099at 433.400 kb on + strand, within BACOVA_04099at 433.400 kb on + strand, within BACOVA_04099at 433.400 kb on + strand, within BACOVA_04099at 433.509 kb on - strand, within BACOVA_04099at 433.526 kb on - strand, within BACOVA_04099at 433.621 kb on + strand, within BACOVA_04099at 433.642 kb on + strand, within BACOVA_04099at 433.684 kb on - strand, within BACOVA_04099

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Per-strain Table

Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media
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430,187 + BACOVA_04097 0.15 -1.5
430,188 - BACOVA_04097 0.16 -1.7
430,300 + BACOVA_04097 0.25 -2.2
430,301 - BACOVA_04097 0.25 -0.2
430,301 - BACOVA_04097 0.25 -0.7
430,326 + BACOVA_04097 0.28 -0.1
430,382 + BACOVA_04097 0.33 -0.1
430,383 - BACOVA_04097 0.33 -0.9
430,383 - BACOVA_04097 0.33 +0.4
430,383 - BACOVA_04097 0.33 +0.9
430,433 + BACOVA_04097 0.37 -0.2
430,471 - BACOVA_04097 0.40 -1.7
430,502 - BACOVA_04097 0.43 +0.1
430,553 + BACOVA_04097 0.48 -0.4
430,554 - BACOVA_04097 0.48 -0.1
430,556 + BACOVA_04097 0.48 +1.2
430,609 + BACOVA_04097 0.52 -0.2
430,610 - BACOVA_04097 0.53 -1.1
430,642 + BACOVA_04097 0.55 -1.7
430,643 - BACOVA_04097 0.55 -1.5
430,643 - BACOVA_04097 0.55 -0.7
430,674 - BACOVA_04097 0.58 +0.1
430,761 - BACOVA_04097 0.66 +0.5
430,826 + BACOVA_04097 0.71 -1.1
430,868 + BACOVA_04097 0.75 -2.5
430,905 + BACOVA_04097 0.78 -0.8
430,906 - BACOVA_04097 0.79 -0.9
430,910 + BACOVA_04097 0.79 -0.5
430,940 + BACOVA_04097 0.81 -0.6
430,940 + BACOVA_04097 0.81 -0.9
430,941 - BACOVA_04097 0.82 -0.9
431,003 + BACOVA_04097 0.87 +0.5
431,004 - BACOVA_04097 0.87 -0.5
431,006 - BACOVA_04097 0.87 +0.6
431,023 + BACOVA_04097 0.89 -1.6
431,026 + BACOVA_04097 0.89 -0.9
431,026 + BACOVA_04097 0.89 +0.4
431,027 - BACOVA_04097 0.89 -1.1
431,027 - BACOVA_04097 0.89 -0.5
431,027 - BACOVA_04097 0.89 -1.6
431,121 + -0.6
431,121 + +1.2
431,122 - +0.6
431,122 - +0.3
431,130 + -0.2
431,170 + +0.9
431,171 - -0.9
431,174 + -1.2
431,174 + -1.0
431,199 + +0.1
431,279 + +0.6
431,280 - +0.3
431,335 - BACOVA_04098 0.10 -0.4
431,403 + BACOVA_04098 0.15 +0.3
431,461 - BACOVA_04098 0.18 -0.7
431,501 + BACOVA_04098 0.21 -1.3
431,507 + BACOVA_04098 0.21 -1.8
431,550 + BACOVA_04098 0.24 -0.9
431,621 + BACOVA_04098 0.29 -0.9
431,741 + BACOVA_04098 0.36 -0.6
431,742 - BACOVA_04098 0.36 -2.2
431,798 + BACOVA_04098 0.40 -0.4
431,804 + BACOVA_04098 0.40 -0.4
431,805 - BACOVA_04098 0.40 +0.0
431,805 - BACOVA_04098 0.40 -1.0
431,805 - BACOVA_04098 0.40 +0.5
431,808 + BACOVA_04098 0.41 +0.4
431,812 + BACOVA_04098 0.41 -0.6
431,813 - BACOVA_04098 0.41 +1.3
431,813 - BACOVA_04098 0.41 +1.3
431,813 - BACOVA_04098 0.41 +0.1
431,816 + BACOVA_04098 0.41 -0.5
431,816 + BACOVA_04098 0.41 +0.3
431,862 - BACOVA_04098 0.44 +1.5
431,887 + BACOVA_04098 0.46 -0.3
431,887 + BACOVA_04098 0.46 -0.6
431,893 - BACOVA_04098 0.46 -1.6
431,897 + BACOVA_04098 0.46 -1.0
431,928 + BACOVA_04098 0.48 +0.2
431,929 - BACOVA_04098 0.48 -0.5
431,951 + BACOVA_04098 0.50 +0.9
431,951 + BACOVA_04098 0.50 +1.3
432,011 + BACOVA_04098 0.54 -0.3
432,084 + BACOVA_04098 0.58 +1.6
432,085 - BACOVA_04098 0.58 +0.4
432,181 + BACOVA_04098 0.65 -0.9
432,185 - BACOVA_04098 0.65 +0.5
432,222 + BACOVA_04098 0.67 -1.8
432,222 + BACOVA_04098 0.67 -0.7
432,225 + BACOVA_04098 0.68 -1.4
432,225 + BACOVA_04098 0.68 -0.5
432,225 + BACOVA_04098 0.68 -0.6
432,225 + BACOVA_04098 0.68 +0.5
432,235 + BACOVA_04098 0.68 -1.7
432,256 + BACOVA_04098 0.70 +0.8
432,257 - BACOVA_04098 0.70 -0.7
432,257 - BACOVA_04098 0.70 -0.7
432,257 - BACOVA_04098 0.70 +0.5
432,261 + BACOVA_04098 0.70 +0.4
432,265 + BACOVA_04098 0.70 -0.3
432,342 + BACOVA_04098 0.75 -1.4
432,347 + BACOVA_04098 0.75 +0.2
432,365 - BACOVA_04098 0.77 -1.1
432,365 - BACOVA_04098 0.77 -0.9
432,380 + BACOVA_04098 0.77 -2.3
432,415 - BACOVA_04098 0.80 -0.1
432,502 + BACOVA_04098 0.85 +2.7
432,510 + BACOVA_04098 0.86 -2.7
432,510 + BACOVA_04098 0.86 +0.2
432,511 - BACOVA_04098 0.86 -0.4
432,515 - BACOVA_04098 0.86 -0.7
432,523 - BACOVA_04098 0.87 -2.0
432,591 - -0.7
432,591 - -0.8
432,642 - +0.1
432,644 + -0.7
432,644 + +1.1
432,644 + -1.1
432,645 - +0.1
432,647 - -0.7
432,647 - +0.9
432,787 + -0.0
432,788 - +0.3
432,802 - -0.9
432,814 + -0.4
432,814 + -1.3
432,815 - -2.7
432,816 + -0.1
432,865 + +0.3
432,871 - +0.4
432,871 - -1.6
432,882 - +1.4
432,886 + +0.0
432,894 - -2.6
432,946 + -1.8
432,948 + +0.3
432,975 - +1.5
432,989 - +1.0
432,989 - -0.7
432,990 + +0.1
432,992 + -2.1
432,996 + -0.7
432,999 + -0.8
433,031 - +3.0
433,039 - +0.9
433,066 + +1.9
433,076 + -0.8
433,077 - BACOVA_04099 0.10 +0.4
433,077 - BACOVA_04099 0.10 +1.3
433,078 + BACOVA_04099 0.10 -0.1
433,078 + BACOVA_04099 0.10 -0.1
433,079 - BACOVA_04099 0.10 -1.1
433,125 + BACOVA_04099 0.11 -0.1
433,126 - BACOVA_04099 0.12 -1.7
433,130 + BACOVA_04099 0.12 +1.4
433,135 + BACOVA_04099 0.12 -2.5
433,136 - BACOVA_04099 0.12 -0.5
433,136 - BACOVA_04099 0.12 -0.5
433,144 + BACOVA_04099 0.12 -0.1
433,158 - BACOVA_04099 0.12 +0.4
433,181 + BACOVA_04099 0.13 -2.7
433,182 - BACOVA_04099 0.13 +0.6
433,204 + BACOVA_04099 0.14 +0.2
433,239 - BACOVA_04099 0.15 -0.8
433,289 + BACOVA_04099 0.16 -1.5
433,295 - BACOVA_04099 0.17 -1.3
433,313 + BACOVA_04099 0.17 -0.8
433,314 - BACOVA_04099 0.17 +1.6
433,315 + BACOVA_04099 0.17 +1.0
433,318 + BACOVA_04099 0.17 +1.0
433,325 - BACOVA_04099 0.18 -3.0
433,347 + BACOVA_04099 0.18 +0.9
433,347 + BACOVA_04099 0.18 +0.7
433,349 + BACOVA_04099 0.18 -0.7
433,350 - BACOVA_04099 0.18 -2.5
433,353 + BACOVA_04099 0.18 +0.2
433,353 + BACOVA_04099 0.18 -0.9
433,353 + BACOVA_04099 0.18 +0.1
433,354 - BACOVA_04099 0.18 +0.5
433,354 - BACOVA_04099 0.18 -1.1
433,358 - BACOVA_04099 0.19 -0.5
433,358 - BACOVA_04099 0.19 -1.5
433,400 + BACOVA_04099 0.20 +0.1
433,400 + BACOVA_04099 0.20 +0.2
433,400 + BACOVA_04099 0.20 -1.4
433,509 - BACOVA_04099 0.23 -2.4
433,526 - BACOVA_04099 0.24 -0.1
433,621 + BACOVA_04099 0.26 -0.8
433,642 + BACOVA_04099 0.27 -0.8
433,684 - BACOVA_04099 0.28 -0.7

Or see this region's nucleotide sequence