Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03555

Experiment: Peptone 2.5 mg/mL (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03552 and BACOVA_03553 are separated by 16 nucleotidesBACOVA_03553 and BACOVA_03554 are separated by 275 nucleotidesBACOVA_03554 and BACOVA_03555 are separated by 23 nucleotidesBACOVA_03555 and BACOVA_03556 are separated by 161 nucleotides BACOVA_03552: BACOVA_03552 - tRNA-Gly, at 326,778 to 326,850 _03552 BACOVA_03553: BACOVA_03553 - tRNA-Leu, at 326,867 to 326,950 _03553 BACOVA_03554: BACOVA_03554 - RNA polymerase sigma-70 factor, at 327,226 to 327,780 _03554 BACOVA_03555: BACOVA_03555 - sigma factor regulatory protein, FecR/PupR family, at 327,804 to 328,823 _03555 BACOVA_03556: BACOVA_03556 - TonB-linked outer membrane protein, SusC/RagA family, at 328,985 to 332,308 _03556 Position (kb) 327 328 329Strain fitness (log2 ratio) -2 -1 0 1 2at 327.049 kb on + strandat 327.059 kb on + strandat 327.088 kb on - strandat 327.117 kb on + strandat 327.133 kb on + strandat 327.154 kb on + strandat 327.159 kb on + strandat 327.177 kb on - strandat 327.179 kb on - strandat 327.185 kb on + strandat 327.363 kb on + strand, within BACOVA_03554at 327.402 kb on + strand, within BACOVA_03554at 327.403 kb on - strand, within BACOVA_03554at 327.419 kb on - strand, within BACOVA_03554at 327.428 kb on + strand, within BACOVA_03554at 327.473 kb on + strand, within BACOVA_03554at 327.484 kb on + strand, within BACOVA_03554at 327.517 kb on + strand, within BACOVA_03554at 327.542 kb on + strand, within BACOVA_03554at 327.543 kb on - strand, within BACOVA_03554at 327.559 kb on + strand, within BACOVA_03554at 327.559 kb on + strand, within BACOVA_03554at 327.560 kb on - strand, within BACOVA_03554at 327.560 kb on - strand, within BACOVA_03554at 327.561 kb on + strand, within BACOVA_03554at 327.562 kb on - strand, within BACOVA_03554at 327.575 kb on + strand, within BACOVA_03554at 327.576 kb on - strand, within BACOVA_03554at 327.624 kb on - strand, within BACOVA_03554at 327.632 kb on + strand, within BACOVA_03554at 327.633 kb on - strand, within BACOVA_03554at 327.650 kb on + strand, within BACOVA_03554at 327.650 kb on + strand, within BACOVA_03554at 327.651 kb on - strand, within BACOVA_03554at 327.712 kb on + strand, within BACOVA_03554at 327.774 kb on + strandat 327.774 kb on + strandat 327.778 kb on + strandat 327.778 kb on + strandat 327.779 kb on - strandat 327.779 kb on - strandat 327.781 kb on + strandat 327.782 kb on - strandat 327.785 kb on + strandat 327.785 kb on + strandat 327.789 kb on + strandat 327.793 kb on - strandat 327.793 kb on - strandat 327.798 kb on + strandat 327.808 kb on - strandat 327.809 kb on + strandat 327.849 kb on - strandat 327.878 kb on + strandat 327.881 kb on + strandat 327.885 kb on + strandat 327.885 kb on + strandat 328.056 kb on - strand, within BACOVA_03555at 328.074 kb on + strand, within BACOVA_03555at 328.085 kb on + strand, within BACOVA_03555at 328.086 kb on - strand, within BACOVA_03555at 328.086 kb on - strand, within BACOVA_03555at 328.086 kb on - strand, within BACOVA_03555at 328.104 kb on - strand, within BACOVA_03555at 328.138 kb on - strand, within BACOVA_03555at 328.185 kb on + strand, within BACOVA_03555at 328.186 kb on - strand, within BACOVA_03555at 328.186 kb on - strand, within BACOVA_03555at 328.187 kb on + strand, within BACOVA_03555at 328.190 kb on - strand, within BACOVA_03555at 328.214 kb on + strand, within BACOVA_03555at 328.230 kb on - strand, within BACOVA_03555at 328.230 kb on - strand, within BACOVA_03555at 328.233 kb on + strand, within BACOVA_03555at 328.233 kb on + strand, within BACOVA_03555at 328.233 kb on + strand, within BACOVA_03555at 328.233 kb on + strand, within BACOVA_03555at 328.233 kb on + strand, within BACOVA_03555at 328.234 kb on - strand, within BACOVA_03555at 328.234 kb on - strand, within BACOVA_03555at 328.234 kb on - strand, within BACOVA_03555at 328.234 kb on - strand, within BACOVA_03555at 328.257 kb on - strand, within BACOVA_03555at 328.258 kb on + strand, within BACOVA_03555at 328.259 kb on - strand, within BACOVA_03555at 328.261 kb on + strand, within BACOVA_03555at 328.261 kb on + strand, within BACOVA_03555at 328.261 kb on + strand, within BACOVA_03555at 328.262 kb on - strand, within BACOVA_03555at 328.262 kb on - strand, within BACOVA_03555at 328.265 kb on - strand, within BACOVA_03555at 328.265 kb on - strand, within BACOVA_03555at 328.300 kb on + strand, within BACOVA_03555at 328.300 kb on + strand, within BACOVA_03555at 328.302 kb on + strand, within BACOVA_03555at 328.303 kb on - strand, within BACOVA_03555at 328.360 kb on + strand, within BACOVA_03555at 328.391 kb on - strand, within BACOVA_03555at 328.404 kb on - strand, within BACOVA_03555at 328.409 kb on - strand, within BACOVA_03555at 328.428 kb on - strand, within BACOVA_03555at 328.457 kb on + strand, within BACOVA_03555at 328.457 kb on + strand, within BACOVA_03555at 328.458 kb on - strand, within BACOVA_03555at 328.479 kb on - strand, within BACOVA_03555at 328.501 kb on + strand, within BACOVA_03555at 328.508 kb on + strand, within BACOVA_03555at 328.568 kb on - strand, within BACOVA_03555at 328.568 kb on - strand, within BACOVA_03555at 328.607 kb on + strand, within BACOVA_03555at 328.607 kb on + strand, within BACOVA_03555at 328.613 kb on + strand, within BACOVA_03555at 328.613 kb on + strand, within BACOVA_03555at 328.614 kb on - strand, within BACOVA_03555at 328.628 kb on + strand, within BACOVA_03555at 328.669 kb on + strand, within BACOVA_03555at 328.669 kb on + strand, within BACOVA_03555at 328.682 kb on + strand, within BACOVA_03555at 328.683 kb on - strand, within BACOVA_03555at 328.698 kb on - strand, within BACOVA_03555at 328.698 kb on - strand, within BACOVA_03555at 328.752 kb on - strandat 328.774 kb on + strandat 328.780 kb on - strandat 328.803 kb on + strandat 328.808 kb on - strandat 328.808 kb on - strandat 328.826 kb on - strandat 328.827 kb on + strandat 328.833 kb on - strandat 328.852 kb on - strandat 328.916 kb on + strandat 328.928 kb on - strandat 328.928 kb on - strandat 328.930 kb on + strandat 328.939 kb on + strandat 328.974 kb on + strandat 328.975 kb on - strandat 328.978 kb on - strandat 328.980 kb on + strandat 329.026 kb on + strandat 329.027 kb on - strandat 329.056 kb on + strandat 329.063 kb on - strandat 329.105 kb on - strandat 329.105 kb on - strandat 329.119 kb on + strandat 329.120 kb on - strandat 329.162 kb on - strandat 329.172 kb on + strandat 329.206 kb on - strandat 329.208 kb on + strandat 329.255 kb on - strandat 329.262 kb on + strandat 329.290 kb on - strandat 329.296 kb on + strandat 329.296 kb on + strandat 329.296 kb on + strandat 329.296 kb on + strandat 329.296 kb on + strandat 329.306 kb on - strandat 329.306 kb on - strandat 329.310 kb on + strandat 329.329 kb on - strand, within BACOVA_03556at 329.329 kb on - strand, within BACOVA_03556at 329.397 kb on + strand, within BACOVA_03556at 329.401 kb on + strand, within BACOVA_03556at 329.401 kb on + strand, within BACOVA_03556at 329.401 kb on + strand, within BACOVA_03556at 329.402 kb on - strand, within BACOVA_03556at 329.402 kb on - strand, within BACOVA_03556at 329.416 kb on + strand, within BACOVA_03556at 329.417 kb on - strand, within BACOVA_03556at 329.417 kb on - strand, within BACOVA_03556at 329.423 kb on - strand, within BACOVA_03556at 329.423 kb on - strand, within BACOVA_03556at 329.428 kb on + strand, within BACOVA_03556at 329.495 kb on + strand, within BACOVA_03556at 329.495 kb on + strand, within BACOVA_03556at 329.496 kb on - strand, within BACOVA_03556at 329.566 kb on + strand, within BACOVA_03556at 329.567 kb on - strand, within BACOVA_03556at 329.633 kb on + strand, within BACOVA_03556at 329.683 kb on + strand, within BACOVA_03556at 329.769 kb on + strand, within BACOVA_03556at 329.769 kb on + strand, within BACOVA_03556at 329.804 kb on + strand, within BACOVA_03556

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Per-strain Table

Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media
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327,049 + +0.6
327,059 + +1.3
327,088 - -1.4
327,117 + +1.1
327,133 + +1.2
327,154 + +1.6
327,159 + +0.6
327,177 - -1.8
327,179 - +0.9
327,185 + +1.9
327,363 + BACOVA_03554 0.25 +0.4
327,402 + BACOVA_03554 0.32 -1.6
327,403 - BACOVA_03554 0.32 +0.5
327,419 - BACOVA_03554 0.35 -0.2
327,428 + BACOVA_03554 0.36 +1.1
327,473 + BACOVA_03554 0.45 +0.7
327,484 + BACOVA_03554 0.46 +0.3
327,517 + BACOVA_03554 0.52 +1.6
327,542 + BACOVA_03554 0.57 +0.8
327,543 - BACOVA_03554 0.57 +0.8
327,559 + BACOVA_03554 0.60 +0.3
327,559 + BACOVA_03554 0.60 +0.4
327,560 - BACOVA_03554 0.60 +0.6
327,560 - BACOVA_03554 0.60 -0.3
327,561 + BACOVA_03554 0.60 +0.5
327,562 - BACOVA_03554 0.61 +0.6
327,575 + BACOVA_03554 0.63 +2.4
327,576 - BACOVA_03554 0.63 -0.5
327,624 - BACOVA_03554 0.72 +0.4
327,632 + BACOVA_03554 0.73 +1.5
327,633 - BACOVA_03554 0.73 +0.9
327,650 + BACOVA_03554 0.76 -0.2
327,650 + BACOVA_03554 0.76 +0.2
327,651 - BACOVA_03554 0.77 -1.6
327,712 + BACOVA_03554 0.88 +0.6
327,774 + +0.8
327,774 + +0.0
327,778 + +1.8
327,778 + +1.2
327,779 - -1.5
327,779 - -0.6
327,781 + +1.4
327,782 - +1.7
327,785 + +2.6
327,785 + +0.8
327,789 + +0.6
327,793 - +0.3
327,793 - -1.7
327,798 + +1.1
327,808 - -1.3
327,809 + +2.0
327,849 - -1.5
327,878 + +0.5
327,881 + +0.2
327,885 + +0.5
327,885 + -0.3
328,056 - BACOVA_03555 0.25 -1.6
328,074 + BACOVA_03555 0.26 +0.3
328,085 + BACOVA_03555 0.28 +1.3
328,086 - BACOVA_03555 0.28 -0.2
328,086 - BACOVA_03555 0.28 -0.9
328,086 - BACOVA_03555 0.28 -0.6
328,104 - BACOVA_03555 0.29 -1.1
328,138 - BACOVA_03555 0.33 -0.4
328,185 + BACOVA_03555 0.37 +0.5
328,186 - BACOVA_03555 0.37 -0.5
328,186 - BACOVA_03555 0.37 -0.2
328,187 + BACOVA_03555 0.38 -2.3
328,190 - BACOVA_03555 0.38 +0.8
328,214 + BACOVA_03555 0.40 +0.1
328,230 - BACOVA_03555 0.42 +0.7
328,230 - BACOVA_03555 0.42 -1.0
328,233 + BACOVA_03555 0.42 -1.4
328,233 + BACOVA_03555 0.42 -0.1
328,233 + BACOVA_03555 0.42 -1.6
328,233 + BACOVA_03555 0.42 -0.4
328,233 + BACOVA_03555 0.42 -0.6
328,234 - BACOVA_03555 0.42 -0.5
328,234 - BACOVA_03555 0.42 -0.3
328,234 - BACOVA_03555 0.42 -2.0
328,234 - BACOVA_03555 0.42 -1.3
328,257 - BACOVA_03555 0.44 -1.9
328,258 + BACOVA_03555 0.45 -1.2
328,259 - BACOVA_03555 0.45 -1.9
328,261 + BACOVA_03555 0.45 -0.0
328,261 + BACOVA_03555 0.45 +2.1
328,261 + BACOVA_03555 0.45 -0.3
328,262 - BACOVA_03555 0.45 -1.7
328,262 - BACOVA_03555 0.45 -2.7
328,265 - BACOVA_03555 0.45 -2.3
328,265 - BACOVA_03555 0.45 -1.1
328,300 + BACOVA_03555 0.49 +0.7
328,300 + BACOVA_03555 0.49 -0.9
328,302 + BACOVA_03555 0.49 -0.9
328,303 - BACOVA_03555 0.49 -2.5
328,360 + BACOVA_03555 0.55 -1.1
328,391 - BACOVA_03555 0.58 -0.1
328,404 - BACOVA_03555 0.59 -1.4
328,409 - BACOVA_03555 0.59 -0.5
328,428 - BACOVA_03555 0.61 -1.7
328,457 + BACOVA_03555 0.64 +1.5
328,457 + BACOVA_03555 0.64 +1.0
328,458 - BACOVA_03555 0.64 -2.6
328,479 - BACOVA_03555 0.66 -1.1
328,501 + BACOVA_03555 0.68 +0.4
328,508 + BACOVA_03555 0.69 +2.7
328,568 - BACOVA_03555 0.75 +0.1
328,568 - BACOVA_03555 0.75 -1.1
328,607 + BACOVA_03555 0.79 -0.4
328,607 + BACOVA_03555 0.79 -0.4
328,613 + BACOVA_03555 0.79 -0.3
328,613 + BACOVA_03555 0.79 +0.9
328,614 - BACOVA_03555 0.79 -0.5
328,628 + BACOVA_03555 0.81 +0.7
328,669 + BACOVA_03555 0.85 +0.3
328,669 + BACOVA_03555 0.85 +1.7
328,682 + BACOVA_03555 0.86 +0.6
328,683 - BACOVA_03555 0.86 -1.5
328,698 - BACOVA_03555 0.88 -0.9
328,698 - BACOVA_03555 0.88 -1.4
328,752 - -2.2
328,774 + -2.7
328,780 - -0.7
328,803 + +0.9
328,808 - +0.6
328,808 - -1.1
328,826 - +0.0
328,827 + +0.4
328,833 - +0.6
328,852 - +0.8
328,916 + -1.3
328,928 - +0.7
328,928 - -1.1
328,930 + +0.9
328,939 + +0.1
328,974 + -0.9
328,975 - +0.3
328,978 - -1.5
328,980 + +0.5
329,026 + +0.7
329,027 - +0.7
329,056 + -0.9
329,063 - +1.8
329,105 - -1.1
329,105 - -0.0
329,119 + +0.2
329,120 - +2.1
329,162 - -0.4
329,172 + -0.5
329,206 - -0.8
329,208 + -0.9
329,255 - -1.6
329,262 + -0.9
329,290 - +0.7
329,296 + -0.3
329,296 + -0.1
329,296 + -0.3
329,296 + -1.1
329,296 + +1.1
329,306 - +0.3
329,306 - -0.5
329,310 + +0.4
329,329 - BACOVA_03556 0.10 +0.0
329,329 - BACOVA_03556 0.10 +0.6
329,397 + BACOVA_03556 0.12 -0.6
329,401 + BACOVA_03556 0.13 -0.7
329,401 + BACOVA_03556 0.13 +0.2
329,401 + BACOVA_03556 0.13 -0.0
329,402 - BACOVA_03556 0.13 +1.5
329,402 - BACOVA_03556 0.13 -0.3
329,416 + BACOVA_03556 0.13 -0.5
329,417 - BACOVA_03556 0.13 +0.7
329,417 - BACOVA_03556 0.13 -0.0
329,423 - BACOVA_03556 0.13 +0.5
329,423 - BACOVA_03556 0.13 -0.7
329,428 + BACOVA_03556 0.13 -2.1
329,495 + BACOVA_03556 0.15 +0.6
329,495 + BACOVA_03556 0.15 -1.4
329,496 - BACOVA_03556 0.15 -0.5
329,566 + BACOVA_03556 0.17 -0.5
329,567 - BACOVA_03556 0.18 +0.2
329,633 + BACOVA_03556 0.19 +0.4
329,683 + BACOVA_03556 0.21 +0.2
329,769 + BACOVA_03556 0.24 -0.4
329,769 + BACOVA_03556 0.24 -0.5
329,804 + BACOVA_03556 0.25 +1.3

Or see this region's nucleotide sequence