Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03523 and BACOVA_03524 are separated by 192 nucleotides BACOVA_03524 and BACOVA_03525 overlap by 23 nucleotides BACOVA_03525 and BACOVA_03526 are separated by 52 nucleotides BACOVA_03526 and BACOVA_03527 are separated by 77 nucleotides BACOVA_03527 and BACOVA_03528 are separated by 26 nucleotides
BACOVA_03523: BACOVA_03523 - translation elongation factor P, at 300,443 to 301,009
_03523
BACOVA_03524: BACOVA_03524 - ribosomal protein L34, at 301,202 to 301,360
_03524
BACOVA_03525: BACOVA_03525 - hypothetical protein, at 301,338 to 301,478
_03525
BACOVA_03526: BACOVA_03526 - hypothetical protein, at 301,531 to 301,647
_03526
BACOVA_03527: BACOVA_03527 - PASTA domain protein, at 301,725 to 302,384
_03527
BACOVA_03528: BACOVA_03528 - pseudouridine synthase, RluA family, at 302,411 to 303,484
_03528
Position (kb) 301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 300.571 kb on + strand, within BACOVA_03523 at 300.571 kb on + strand, within BACOVA_03523 at 300.578 kb on - strand, within BACOVA_03523 at 300.601 kb on + strand, within BACOVA_03523 at 300.642 kb on + strand, within BACOVA_03523 at 300.642 kb on + strand, within BACOVA_03523 at 300.647 kb on + strand, within BACOVA_03523 at 300.648 kb on - strand, within BACOVA_03523 at 300.716 kb on - strand, within BACOVA_03523 at 300.733 kb on + strand, within BACOVA_03523 at 300.769 kb on + strand, within BACOVA_03523 at 300.769 kb on + strand, within BACOVA_03523 at 300.770 kb on - strand, within BACOVA_03523 at 300.771 kb on + strand, within BACOVA_03523 at 300.771 kb on + strand, within BACOVA_03523 at 300.772 kb on - strand, within BACOVA_03523 at 300.816 kb on - strand, within BACOVA_03523 at 300.822 kb on - strand, within BACOVA_03523 at 300.868 kb on - strand, within BACOVA_03523 at 300.878 kb on + strand, within BACOVA_03523 at 300.917 kb on - strand, within BACOVA_03523 at 300.926 kb on + strand, within BACOVA_03523 at 300.927 kb on - strand, within BACOVA_03523 at 300.927 kb on - strand, within BACOVA_03523 at 300.927 kb on - strand, within BACOVA_03523 at 300.952 kb on - strand, within BACOVA_03523 at 301.010 kb on - strand at 301.010 kb on - strand at 301.027 kb on + strand at 301.028 kb on - strand at 301.029 kb on + strand at 301.440 kb on - strand, within BACOVA_03525 at 301.440 kb on - strand, within BACOVA_03525 at 301.440 kb on - strand, within BACOVA_03525 at 301.442 kb on + strand, within BACOVA_03525 at 301.442 kb on + strand, within BACOVA_03525 at 301.442 kb on + strand, within BACOVA_03525 at 301.502 kb on + strand at 301.525 kb on + strand at 301.525 kb on + strand at 301.526 kb on - strand at 301.535 kb on + strand at 301.536 kb on - strand at 301.540 kb on + strand at 301.541 kb on - strand at 301.541 kb on - strand at 301.541 kb on - strand at 301.572 kb on - strand, within BACOVA_03526 at 301.572 kb on - strand, within BACOVA_03526 at 301.574 kb on + strand, within BACOVA_03526 at 301.574 kb on + strand, within BACOVA_03526 at 301.574 kb on + strand, within BACOVA_03526 at 301.575 kb on - strand, within BACOVA_03526 at 301.575 kb on - strand, within BACOVA_03526 at 301.590 kb on + strand, within BACOVA_03526 at 301.608 kb on - strand, within BACOVA_03526 at 301.632 kb on - strand, within BACOVA_03526 at 301.648 kb on + strand at 301.648 kb on + strand at 301.648 kb on + strand at 301.649 kb on - strand at 301.649 kb on - strand at 301.649 kb on - strand at 301.649 kb on - strand at 301.652 kb on + strand at 301.653 kb on - strand at 301.655 kb on - strand at 302.288 kb on + strand, within BACOVA_03527 at 302.385 kb on + strand at 302.389 kb on + strand at 302.389 kb on + strand at 302.458 kb on + strand at 302.460 kb on + strand at 302.460 kb on + strand at 302.511 kb on + strand at 302.511 kb on + strand at 302.546 kb on + strand, within BACOVA_03528 at 302.546 kb on + strand, within BACOVA_03528
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 300,571 + BACOVA_03523 0.23 +0.1 300,571 + BACOVA_03523 0.23 -1.6 300,578 - BACOVA_03523 0.24 -2.3 300,601 + BACOVA_03523 0.28 +0.2 300,642 + BACOVA_03523 0.35 -1.3 300,642 + BACOVA_03523 0.35 -0.3 300,647 + BACOVA_03523 0.36 -2.7 300,648 - BACOVA_03523 0.36 -2.3 300,716 - BACOVA_03523 0.48 -0.5 300,733 + BACOVA_03523 0.51 -1.9 300,769 + BACOVA_03523 0.57 -1.1 300,769 + BACOVA_03523 0.57 -0.5 300,770 - BACOVA_03523 0.58 -1.5 300,771 + BACOVA_03523 0.58 -0.3 300,771 + BACOVA_03523 0.58 -0.3 300,772 - BACOVA_03523 0.58 +1.1 300,816 - BACOVA_03523 0.66 -2.2 300,822 - BACOVA_03523 0.67 -0.7 300,868 - BACOVA_03523 0.75 -0.5 300,878 + BACOVA_03523 0.77 -0.7 300,917 - BACOVA_03523 0.84 -3.2 300,926 + BACOVA_03523 0.85 -2.7 300,927 - BACOVA_03523 0.85 +0.1 300,927 - BACOVA_03523 0.85 -0.7 300,927 - BACOVA_03523 0.85 -2.4 300,952 - BACOVA_03523 0.90 -2.6 301,010 - +0.1 301,010 - -0.2 301,027 + -0.5 301,028 - +0.2 301,029 + -1.1 301,440 - BACOVA_03525 0.72 +1.3 301,440 - BACOVA_03525 0.72 +0.4 301,440 - BACOVA_03525 0.72 -1.3 301,442 + BACOVA_03525 0.74 +0.2 301,442 + BACOVA_03525 0.74 -1.0 301,442 + BACOVA_03525 0.74 -1.6 301,502 + -1.8 301,525 + +0.2 301,525 + +0.7 301,526 - +0.8 301,535 + -1.2 301,536 - +0.4 301,540 + +1.9 301,541 - -0.7 301,541 - +1.8 301,541 - -0.1 301,572 - BACOVA_03526 0.35 +0.6 301,572 - BACOVA_03526 0.35 +0.9 301,574 + BACOVA_03526 0.37 +0.0 301,574 + BACOVA_03526 0.37 -2.2 301,574 + BACOVA_03526 0.37 -2.5 301,575 - BACOVA_03526 0.38 -2.6 301,575 - BACOVA_03526 0.38 -0.3 301,590 + BACOVA_03526 0.50 +0.6 301,608 - BACOVA_03526 0.66 +3.1 301,632 - BACOVA_03526 0.86 +0.3 301,648 + +1.0 301,648 + +0.7 301,648 + -1.6 301,649 - -0.6 301,649 - +1.3 301,649 - -0.9 301,649 - +0.1 301,652 + -0.7 301,653 - -0.3 301,655 - +0.2 302,288 + BACOVA_03527 0.85 -1.7 302,385 + -1.2 302,389 + -0.6 302,389 + +0.3 302,458 + +0.3 302,460 + +0.0 302,460 + -1.8 302,511 + -1.5 302,511 + -0.5 302,546 + BACOVA_03528 0.13 -1.4 302,546 + BACOVA_03528 0.13 -1.0
Or see this region's nucleotide sequence