Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03137

Experiment: Peptone 2.5 mg/mL (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03136 and BACOVA_03137 are separated by 101 nucleotidesBACOVA_03137 and BACOVA_03138 overlap by 20 nucleotidesBACOVA_03138 and BACOVA_03139 are separated by 16 nucleotides BACOVA_03136: BACOVA_03136 - RDD family protein, at 228,185 to 228,910 _03136 BACOVA_03137: BACOVA_03137 - membrane protein, at 229,012 to 229,974 _03137 BACOVA_03138: BACOVA_03138 - hypothetical protein, at 229,955 to 230,893 _03138 BACOVA_03139: BACOVA_03139 - hypothetical protein, at 230,910 to 231,527 _03139 Position (kb) 229 230Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 228.026 kb on + strandat 228.026 kb on + strandat 228.028 kb on + strandat 228.029 kb on - strandat 228.066 kb on + strandat 228.067 kb on - strandat 228.073 kb on - strandat 228.188 kb on + strandat 228.205 kb on - strandat 228.284 kb on + strand, within BACOVA_03136at 228.293 kb on - strand, within BACOVA_03136at 228.353 kb on - strand, within BACOVA_03136at 228.393 kb on + strand, within BACOVA_03136at 228.396 kb on - strand, within BACOVA_03136at 228.439 kb on + strand, within BACOVA_03136at 228.440 kb on - strand, within BACOVA_03136at 228.440 kb on - strand, within BACOVA_03136at 228.452 kb on - strand, within BACOVA_03136at 228.594 kb on + strand, within BACOVA_03136at 228.595 kb on - strand, within BACOVA_03136at 228.640 kb on + strand, within BACOVA_03136at 228.717 kb on + strand, within BACOVA_03136at 228.741 kb on - strand, within BACOVA_03136at 228.759 kb on - strand, within BACOVA_03136at 228.760 kb on + strand, within BACOVA_03136at 228.765 kb on - strand, within BACOVA_03136at 228.782 kb on - strand, within BACOVA_03136at 228.947 kb on + strandat 228.952 kb on + strandat 229.023 kb on - strandat 229.030 kb on - strandat 229.117 kb on + strand, within BACOVA_03137at 229.118 kb on - strand, within BACOVA_03137at 229.118 kb on - strand, within BACOVA_03137at 229.118 kb on - strand, within BACOVA_03137at 229.120 kb on - strand, within BACOVA_03137at 229.173 kb on + strand, within BACOVA_03137at 229.179 kb on + strand, within BACOVA_03137at 229.191 kb on + strand, within BACOVA_03137at 229.208 kb on + strand, within BACOVA_03137at 229.209 kb on - strand, within BACOVA_03137at 229.311 kb on - strand, within BACOVA_03137at 229.358 kb on + strand, within BACOVA_03137at 229.398 kb on - strand, within BACOVA_03137at 229.408 kb on + strand, within BACOVA_03137at 229.412 kb on + strand, within BACOVA_03137at 229.412 kb on + strand, within BACOVA_03137at 229.413 kb on - strand, within BACOVA_03137at 229.416 kb on + strand, within BACOVA_03137at 229.416 kb on + strand, within BACOVA_03137at 229.417 kb on - strand, within BACOVA_03137at 229.417 kb on - strand, within BACOVA_03137at 229.417 kb on - strand, within BACOVA_03137at 229.431 kb on + strand, within BACOVA_03137at 229.431 kb on + strand, within BACOVA_03137at 229.432 kb on - strand, within BACOVA_03137at 229.433 kb on + strand, within BACOVA_03137at 229.517 kb on + strand, within BACOVA_03137at 229.518 kb on - strand, within BACOVA_03137at 229.518 kb on - strand, within BACOVA_03137at 229.567 kb on + strand, within BACOVA_03137at 229.567 kb on + strand, within BACOVA_03137at 229.568 kb on - strand, within BACOVA_03137at 229.568 kb on - strand, within BACOVA_03137at 229.568 kb on - strand, within BACOVA_03137at 229.569 kb on + strand, within BACOVA_03137at 229.569 kb on + strand, within BACOVA_03137at 229.570 kb on - strand, within BACOVA_03137at 229.570 kb on - strand, within BACOVA_03137at 229.570 kb on - strand, within BACOVA_03137at 229.575 kb on + strand, within BACOVA_03137at 229.635 kb on - strand, within BACOVA_03137at 229.654 kb on - strand, within BACOVA_03137at 229.719 kb on - strand, within BACOVA_03137at 229.821 kb on + strand, within BACOVA_03137at 229.821 kb on + strand, within BACOVA_03137at 229.822 kb on - strand, within BACOVA_03137at 229.825 kb on - strand, within BACOVA_03137at 229.836 kb on + strand, within BACOVA_03137at 229.837 kb on - strand, within BACOVA_03137at 229.837 kb on - strand, within BACOVA_03137at 229.839 kb on - strand, within BACOVA_03137at 229.914 kb on + strandat 229.915 kb on - strandat 229.915 kb on - strandat 229.915 kb on - strandat 229.920 kb on - strandat 229.925 kb on - strandat 229.925 kb on - strandat 229.934 kb on - strandat 229.986 kb on - strandat 230.079 kb on + strand, within BACOVA_03138at 230.086 kb on + strand, within BACOVA_03138at 230.086 kb on + strand, within BACOVA_03138at 230.086 kb on + strand, within BACOVA_03138at 230.086 kb on + strand, within BACOVA_03138at 230.088 kb on + strand, within BACOVA_03138at 230.089 kb on - strand, within BACOVA_03138at 230.094 kb on + strand, within BACOVA_03138at 230.108 kb on - strand, within BACOVA_03138at 230.114 kb on - strand, within BACOVA_03138at 230.143 kb on + strand, within BACOVA_03138at 230.170 kb on - strand, within BACOVA_03138at 230.185 kb on - strand, within BACOVA_03138at 230.226 kb on + strand, within BACOVA_03138at 230.227 kb on - strand, within BACOVA_03138at 230.227 kb on - strand, within BACOVA_03138at 230.238 kb on + strand, within BACOVA_03138at 230.238 kb on + strand, within BACOVA_03138at 230.239 kb on - strand, within BACOVA_03138at 230.291 kb on + strand, within BACOVA_03138at 230.292 kb on - strand, within BACOVA_03138at 230.337 kb on + strand, within BACOVA_03138at 230.337 kb on + strand, within BACOVA_03138at 230.431 kb on - strand, within BACOVA_03138at 230.489 kb on - strand, within BACOVA_03138at 230.493 kb on + strand, within BACOVA_03138at 230.494 kb on - strand, within BACOVA_03138at 230.503 kb on - strand, within BACOVA_03138at 230.505 kb on + strand, within BACOVA_03138at 230.506 kb on - strand, within BACOVA_03138at 230.506 kb on - strand, within BACOVA_03138at 230.519 kb on + strand, within BACOVA_03138at 230.524 kb on - strand, within BACOVA_03138at 230.607 kb on + strand, within BACOVA_03138at 230.635 kb on - strand, within BACOVA_03138at 230.668 kb on - strand, within BACOVA_03138at 230.668 kb on - strand, within BACOVA_03138at 230.672 kb on + strand, within BACOVA_03138at 230.672 kb on + strand, within BACOVA_03138at 230.672 kb on + strand, within BACOVA_03138at 230.692 kb on + strand, within BACOVA_03138at 230.693 kb on - strand, within BACOVA_03138at 230.695 kb on + strand, within BACOVA_03138at 230.695 kb on + strand, within BACOVA_03138at 230.747 kb on + strand, within BACOVA_03138at 230.747 kb on + strand, within BACOVA_03138at 230.748 kb on - strand, within BACOVA_03138at 230.748 kb on - strand, within BACOVA_03138at 230.780 kb on + strand, within BACOVA_03138at 230.781 kb on - strand, within BACOVA_03138at 230.793 kb on + strand, within BACOVA_03138at 230.797 kb on + strand, within BACOVA_03138at 230.798 kb on - strand, within BACOVA_03138at 230.817 kb on - strandat 230.844 kb on + strandat 230.845 kb on - strandat 230.854 kb on - strandat 230.854 kb on - strandat 230.859 kb on + strandat 230.870 kb on - strandat 230.933 kb on + strandat 230.938 kb on + strandat 230.949 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media
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228,026 + -0.9
228,026 + +0.1
228,028 + -1.0
228,029 - +0.3
228,066 + +0.3
228,067 - +0.3
228,073 - -0.1
228,188 + +0.8
228,205 - +1.6
228,284 + BACOVA_03136 0.14 -0.1
228,293 - BACOVA_03136 0.15 +1.0
228,353 - BACOVA_03136 0.23 +0.6
228,393 + BACOVA_03136 0.29 +0.3
228,396 - BACOVA_03136 0.29 -1.3
228,439 + BACOVA_03136 0.35 -0.6
228,440 - BACOVA_03136 0.35 -0.2
228,440 - BACOVA_03136 0.35 +0.4
228,452 - BACOVA_03136 0.37 -0.5
228,594 + BACOVA_03136 0.56 -0.8
228,595 - BACOVA_03136 0.56 +0.1
228,640 + BACOVA_03136 0.63 +1.2
228,717 + BACOVA_03136 0.73 -0.2
228,741 - BACOVA_03136 0.77 -0.5
228,759 - BACOVA_03136 0.79 -0.5
228,760 + BACOVA_03136 0.79 -0.0
228,765 - BACOVA_03136 0.80 -0.4
228,782 - BACOVA_03136 0.82 -0.5
228,947 + +0.4
228,952 + -1.3
229,023 - +1.1
229,030 - -1.0
229,117 + BACOVA_03137 0.11 -2.9
229,118 - BACOVA_03137 0.11 -1.1
229,118 - BACOVA_03137 0.11 -0.4
229,118 - BACOVA_03137 0.11 +0.2
229,120 - BACOVA_03137 0.11 +0.0
229,173 + BACOVA_03137 0.17 -0.6
229,179 + BACOVA_03137 0.17 -1.3
229,191 + BACOVA_03137 0.19 -0.6
229,208 + BACOVA_03137 0.20 +0.1
229,209 - BACOVA_03137 0.20 -0.6
229,311 - BACOVA_03137 0.31 -0.4
229,358 + BACOVA_03137 0.36 +0.6
229,398 - BACOVA_03137 0.40 +1.1
229,408 + BACOVA_03137 0.41 +0.6
229,412 + BACOVA_03137 0.42 +0.5
229,412 + BACOVA_03137 0.42 -0.9
229,413 - BACOVA_03137 0.42 -2.3
229,416 + BACOVA_03137 0.42 -1.7
229,416 + BACOVA_03137 0.42 -0.0
229,417 - BACOVA_03137 0.42 +0.4
229,417 - BACOVA_03137 0.42 +2.8
229,417 - BACOVA_03137 0.42 +0.5
229,431 + BACOVA_03137 0.44 +0.6
229,431 + BACOVA_03137 0.44 -1.5
229,432 - BACOVA_03137 0.44 +0.7
229,433 + BACOVA_03137 0.44 +0.8
229,517 + BACOVA_03137 0.52 +0.8
229,518 - BACOVA_03137 0.53 -0.6
229,518 - BACOVA_03137 0.53 +0.6
229,567 + BACOVA_03137 0.58 +1.1
229,567 + BACOVA_03137 0.58 +0.7
229,568 - BACOVA_03137 0.58 +0.4
229,568 - BACOVA_03137 0.58 +1.1
229,568 - BACOVA_03137 0.58 -0.4
229,569 + BACOVA_03137 0.58 +1.1
229,569 + BACOVA_03137 0.58 -0.4
229,570 - BACOVA_03137 0.58 +0.7
229,570 - BACOVA_03137 0.58 +1.0
229,570 - BACOVA_03137 0.58 -0.9
229,575 + BACOVA_03137 0.58 +0.5
229,635 - BACOVA_03137 0.65 -1.4
229,654 - BACOVA_03137 0.67 +0.7
229,719 - BACOVA_03137 0.73 +1.7
229,821 + BACOVA_03137 0.84 -0.5
229,821 + BACOVA_03137 0.84 +0.1
229,822 - BACOVA_03137 0.84 +0.7
229,825 - BACOVA_03137 0.84 +1.8
229,836 + BACOVA_03137 0.86 -0.7
229,837 - BACOVA_03137 0.86 +0.4
229,837 - BACOVA_03137 0.86 -1.4
229,839 - BACOVA_03137 0.86 -0.1
229,914 + +0.7
229,915 - +0.1
229,915 - -0.4
229,915 - +0.9
229,920 - -1.4
229,925 - -0.9
229,925 - -1.8
229,934 - -1.1
229,986 - +0.2
230,079 + BACOVA_03138 0.13 -0.3
230,086 + BACOVA_03138 0.14 -0.8
230,086 + BACOVA_03138 0.14 -1.1
230,086 + BACOVA_03138 0.14 +0.7
230,086 + BACOVA_03138 0.14 -1.2
230,088 + BACOVA_03138 0.14 +0.0
230,089 - BACOVA_03138 0.14 +0.3
230,094 + BACOVA_03138 0.15 -0.9
230,108 - BACOVA_03138 0.16 -1.1
230,114 - BACOVA_03138 0.17 +1.2
230,143 + BACOVA_03138 0.20 +0.7
230,170 - BACOVA_03138 0.23 -1.3
230,185 - BACOVA_03138 0.24 -0.0
230,226 + BACOVA_03138 0.29 +0.7
230,227 - BACOVA_03138 0.29 +0.4
230,227 - BACOVA_03138 0.29 +3.3
230,238 + BACOVA_03138 0.30 +0.2
230,238 + BACOVA_03138 0.30 +0.9
230,239 - BACOVA_03138 0.30 -0.5
230,291 + BACOVA_03138 0.36 +0.0
230,292 - BACOVA_03138 0.36 +0.1
230,337 + BACOVA_03138 0.41 +0.5
230,337 + BACOVA_03138 0.41 +1.1
230,431 - BACOVA_03138 0.51 +0.8
230,489 - BACOVA_03138 0.57 -1.2
230,493 + BACOVA_03138 0.57 +0.2
230,494 - BACOVA_03138 0.57 +0.9
230,503 - BACOVA_03138 0.58 +1.2
230,505 + BACOVA_03138 0.59 +0.6
230,506 - BACOVA_03138 0.59 +2.8
230,506 - BACOVA_03138 0.59 +0.6
230,519 + BACOVA_03138 0.60 -1.8
230,524 - BACOVA_03138 0.61 +0.3
230,607 + BACOVA_03138 0.69 +0.1
230,635 - BACOVA_03138 0.72 -1.3
230,668 - BACOVA_03138 0.76 -1.1
230,668 - BACOVA_03138 0.76 -0.2
230,672 + BACOVA_03138 0.76 -0.6
230,672 + BACOVA_03138 0.76 -2.1
230,672 + BACOVA_03138 0.76 -2.7
230,692 + BACOVA_03138 0.78 +0.8
230,693 - BACOVA_03138 0.79 +0.0
230,695 + BACOVA_03138 0.79 +0.3
230,695 + BACOVA_03138 0.79 -1.3
230,747 + BACOVA_03138 0.84 +0.7
230,747 + BACOVA_03138 0.84 -0.5
230,748 - BACOVA_03138 0.84 -1.1
230,748 - BACOVA_03138 0.84 -1.4
230,780 + BACOVA_03138 0.88 -0.7
230,781 - BACOVA_03138 0.88 +0.2
230,793 + BACOVA_03138 0.89 -0.4
230,797 + BACOVA_03138 0.90 +2.5
230,798 - BACOVA_03138 0.90 +1.2
230,817 - -0.7
230,844 + +0.1
230,845 - +1.3
230,854 - -0.6
230,854 - -1.4
230,859 + -0.1
230,870 - -1.6
230,933 + -0.7
230,938 + +0.5
230,949 - -0.5

Or see this region's nucleotide sequence