Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02686 and BACOVA_02687 overlap by 4 nucleotides BACOVA_02687 and BACOVA_02688 are separated by 174 nucleotides BACOVA_02688 and BACOVA_02689 are separated by 51 nucleotides BACOVA_02689 and BACOVA_02690 are separated by 192 nucleotides
BACOVA_02686: BACOVA_02686 - hypothetical protein, at 92,158 to 93,423
_02686
BACOVA_02687: BACOVA_02687 - hypothetical protein, at 93,420 to 94,289
_02687
BACOVA_02688: BACOVA_02688 - hypothetical protein, at 94,464 to 94,631
_02688
BACOVA_02689: BACOVA_02689 - DNA-binding helix-turn-helix protein, at 94,683 to 95,078
_02689
BACOVA_02690: BACOVA_02690 - HMGL-like protein, at 95,271 to 97,049
_02690
Position (kb) 93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 92.430 kb on + strand, within BACOVA_02686 at 92.431 kb on - strand, within BACOVA_02686 at 92.442 kb on + strand, within BACOVA_02686 at 92.442 kb on + strand, within BACOVA_02686 at 92.442 kb on + strand, within BACOVA_02686 at 92.454 kb on + strand, within BACOVA_02686 at 92.557 kb on + strand, within BACOVA_02686 at 92.558 kb on - strand, within BACOVA_02686 at 92.562 kb on + strand, within BACOVA_02686 at 92.562 kb on + strand, within BACOVA_02686 at 92.563 kb on - strand, within BACOVA_02686 at 92.680 kb on + strand, within BACOVA_02686 at 92.680 kb on + strand, within BACOVA_02686 at 92.708 kb on + strand, within BACOVA_02686 at 92.708 kb on + strand, within BACOVA_02686 at 92.708 kb on + strand, within BACOVA_02686 at 92.709 kb on - strand, within BACOVA_02686 at 92.763 kb on + strand, within BACOVA_02686 at 92.764 kb on - strand, within BACOVA_02686 at 92.852 kb on + strand, within BACOVA_02686 at 92.895 kb on + strand, within BACOVA_02686 at 92.904 kb on - strand, within BACOVA_02686 at 92.904 kb on - strand, within BACOVA_02686 at 92.926 kb on - strand, within BACOVA_02686 at 92.927 kb on + strand, within BACOVA_02686 at 92.936 kb on - strand, within BACOVA_02686 at 93.043 kb on + strand, within BACOVA_02686 at 93.043 kb on + strand, within BACOVA_02686 at 93.044 kb on - strand, within BACOVA_02686 at 93.047 kb on - strand, within BACOVA_02686 at 93.047 kb on - strand, within BACOVA_02686 at 93.074 kb on + strand, within BACOVA_02686 at 93.074 kb on + strand, within BACOVA_02686 at 93.074 kb on + strand, within BACOVA_02686 at 93.074 kb on + strand, within BACOVA_02686 at 93.075 kb on - strand, within BACOVA_02686 at 93.075 kb on - strand, within BACOVA_02686 at 93.117 kb on - strand, within BACOVA_02686 at 93.136 kb on - strand, within BACOVA_02686 at 93.138 kb on - strand, within BACOVA_02686 at 93.162 kb on + strand, within BACOVA_02686 at 93.162 kb on + strand, within BACOVA_02686 at 93.162 kb on + strand, within BACOVA_02686 at 93.164 kb on + strand, within BACOVA_02686 at 93.167 kb on + strand, within BACOVA_02686 at 93.168 kb on - strand, within BACOVA_02686 at 93.229 kb on + strand, within BACOVA_02686 at 93.230 kb on - strand, within BACOVA_02686 at 93.261 kb on + strand, within BACOVA_02686 at 93.261 kb on + strand, within BACOVA_02686 at 93.261 kb on + strand, within BACOVA_02686 at 93.266 kb on - strand, within BACOVA_02686 at 93.310 kb on + strand at 93.316 kb on - strand at 93.338 kb on - strand at 93.338 kb on - strand at 93.380 kb on + strand at 93.381 kb on - strand at 93.381 kb on - strand at 93.381 kb on - strand at 93.382 kb on + strand at 93.382 kb on + strand at 93.383 kb on - strand at 93.383 kb on - strand at 93.389 kb on - strand at 93.423 kb on + strand at 93.464 kb on + strand at 93.498 kb on + strand at 93.525 kb on - strand, within BACOVA_02687 at 93.528 kb on + strand, within BACOVA_02687 at 93.529 kb on - strand, within BACOVA_02687 at 93.613 kb on - strand, within BACOVA_02687 at 93.642 kb on + strand, within BACOVA_02687 at 93.642 kb on + strand, within BACOVA_02687 at 93.654 kb on - strand, within BACOVA_02687 at 93.670 kb on + strand, within BACOVA_02687 at 93.670 kb on + strand, within BACOVA_02687 at 93.671 kb on - strand, within BACOVA_02687 at 93.671 kb on - strand, within BACOVA_02687 at 93.672 kb on + strand, within BACOVA_02687 at 93.672 kb on + strand, within BACOVA_02687 at 93.672 kb on + strand, within BACOVA_02687 at 93.673 kb on - strand, within BACOVA_02687 at 93.698 kb on + strand, within BACOVA_02687 at 93.698 kb on + strand, within BACOVA_02687 at 93.712 kb on - strand, within BACOVA_02687 at 93.736 kb on + strand, within BACOVA_02687 at 93.736 kb on + strand, within BACOVA_02687 at 93.762 kb on + strand, within BACOVA_02687 at 93.762 kb on + strand, within BACOVA_02687 at 93.765 kb on + strand, within BACOVA_02687 at 93.769 kb on - strand, within BACOVA_02687 at 93.769 kb on - strand, within BACOVA_02687 at 93.806 kb on + strand, within BACOVA_02687 at 93.816 kb on - strand, within BACOVA_02687 at 93.863 kb on + strand, within BACOVA_02687 at 93.879 kb on + strand, within BACOVA_02687 at 93.896 kb on - strand, within BACOVA_02687 at 93.913 kb on + strand, within BACOVA_02687 at 93.913 kb on + strand, within BACOVA_02687 at 93.916 kb on + strand, within BACOVA_02687 at 93.916 kb on + strand, within BACOVA_02687 at 93.916 kb on + strand, within BACOVA_02687 at 93.917 kb on - strand, within BACOVA_02687 at 93.956 kb on + strand, within BACOVA_02687 at 93.956 kb on + strand, within BACOVA_02687 at 93.962 kb on + strand, within BACOVA_02687 at 93.963 kb on - strand, within BACOVA_02687 at 93.966 kb on - strand, within BACOVA_02687 at 93.983 kb on - strand, within BACOVA_02687 at 94.034 kb on + strand, within BACOVA_02687 at 94.082 kb on + strand, within BACOVA_02687 at 94.097 kb on + strand, within BACOVA_02687 at 94.104 kb on + strand, within BACOVA_02687 at 94.131 kb on + strand, within BACOVA_02687 at 94.134 kb on + strand, within BACOVA_02687 at 94.142 kb on + strand, within BACOVA_02687 at 94.164 kb on - strand, within BACOVA_02687 at 94.172 kb on + strand, within BACOVA_02687 at 94.192 kb on + strand, within BACOVA_02687 at 94.199 kb on + strand, within BACOVA_02687 at 94.201 kb on + strand, within BACOVA_02687 at 94.202 kb on - strand, within BACOVA_02687 at 94.202 kb on - strand, within BACOVA_02687 at 94.202 kb on - strand, within BACOVA_02687 at 94.214 kb on + strand at 94.263 kb on - strand at 94.273 kb on - strand at 94.316 kb on + strand at 94.317 kb on - strand at 94.360 kb on + strand at 94.388 kb on - strand at 94.438 kb on - strand at 94.444 kb on + strand at 94.449 kb on + strand at 94.449 kb on + strand at 94.450 kb on - strand at 94.450 kb on - strand at 94.459 kb on - strand at 94.463 kb on - strand at 94.466 kb on - strand at 94.487 kb on - strand, within BACOVA_02688 at 94.490 kb on + strand, within BACOVA_02688 at 94.491 kb on - strand, within BACOVA_02688 at 94.528 kb on - strand, within BACOVA_02688 at 94.607 kb on - strand, within BACOVA_02688 at 94.613 kb on + strand, within BACOVA_02688 at 94.624 kb on - strand at 94.655 kb on - strand at 94.681 kb on - strand at 94.681 kb on - strand at 94.705 kb on + strand at 94.706 kb on - strand at 94.709 kb on - strand at 94.709 kb on - strand at 94.780 kb on + strand, within BACOVA_02689 at 94.781 kb on - strand, within BACOVA_02689 at 94.781 kb on - strand, within BACOVA_02689 at 94.800 kb on - strand, within BACOVA_02689 at 94.800 kb on - strand, within BACOVA_02689 at 94.850 kb on - strand, within BACOVA_02689 at 94.859 kb on - strand, within BACOVA_02689 at 94.862 kb on - strand, within BACOVA_02689 at 94.882 kb on + strand, within BACOVA_02689 at 94.887 kb on - strand, within BACOVA_02689 at 94.908 kb on + strand, within BACOVA_02689 at 94.908 kb on + strand, within BACOVA_02689 at 94.937 kb on + strand, within BACOVA_02689 at 94.938 kb on - strand, within BACOVA_02689 at 94.952 kb on + strand, within BACOVA_02689 at 94.962 kb on - strand, within BACOVA_02689 at 94.962 kb on - strand, within BACOVA_02689 at 94.965 kb on - strand, within BACOVA_02689 at 95.035 kb on + strand, within BACOVA_02689 at 95.036 kb on - strand, within BACOVA_02689 at 95.036 kb on - strand, within BACOVA_02689 at 95.040 kb on - strand at 95.040 kb on - strand at 95.045 kb on + strand at 95.046 kb on - strand at 95.047 kb on + strand at 95.074 kb on + strand at 95.074 kb on + strand at 95.075 kb on - strand at 95.075 kb on - strand at 95.085 kb on + strand at 95.086 kb on - strand at 95.151 kb on + strand at 95.181 kb on + strand at 95.181 kb on + strand at 95.181 kb on + strand at 95.182 kb on - strand at 95.184 kb on - strand at 95.246 kb on + strand at 95.247 kb on - strand at 95.247 kb on - strand at 95.247 kb on - strand at 95.247 kb on - strand at 95.249 kb on - strand at 95.249 kb on - strand at 95.261 kb on - strand at 95.261 kb on - strand at 95.262 kb on + strand at 95.262 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 92,430 + BACOVA_02686 0.21 +1.0 92,431 - BACOVA_02686 0.22 -0.1 92,442 + BACOVA_02686 0.22 -0.3 92,442 + BACOVA_02686 0.22 -2.2 92,442 + BACOVA_02686 0.22 +1.0 92,454 + BACOVA_02686 0.23 +0.8 92,557 + BACOVA_02686 0.32 -0.8 92,558 - BACOVA_02686 0.32 +1.8 92,562 + BACOVA_02686 0.32 +0.6 92,562 + BACOVA_02686 0.32 +0.7 92,563 - BACOVA_02686 0.32 +0.7 92,680 + BACOVA_02686 0.41 -1.3 92,680 + BACOVA_02686 0.41 +0.5 92,708 + BACOVA_02686 0.43 -1.0 92,708 + BACOVA_02686 0.43 +0.4 92,708 + BACOVA_02686 0.43 -1.2 92,709 - BACOVA_02686 0.44 -0.8 92,763 + BACOVA_02686 0.48 -0.2 92,764 - BACOVA_02686 0.48 +0.1 92,852 + BACOVA_02686 0.55 -1.0 92,895 + BACOVA_02686 0.58 -0.9 92,904 - BACOVA_02686 0.59 -1.0 92,904 - BACOVA_02686 0.59 -1.3 92,926 - BACOVA_02686 0.61 -0.7 92,927 + BACOVA_02686 0.61 -0.7 92,936 - BACOVA_02686 0.61 +0.4 93,043 + BACOVA_02686 0.70 -0.6 93,043 + BACOVA_02686 0.70 +0.5 93,044 - BACOVA_02686 0.70 +1.4 93,047 - BACOVA_02686 0.70 -2.8 93,047 - BACOVA_02686 0.70 -1.0 93,074 + BACOVA_02686 0.72 -0.3 93,074 + BACOVA_02686 0.72 +1.8 93,074 + BACOVA_02686 0.72 -0.3 93,074 + BACOVA_02686 0.72 +0.0 93,075 - BACOVA_02686 0.72 +1.2 93,075 - BACOVA_02686 0.72 -1.0 93,117 - BACOVA_02686 0.76 -0.1 93,136 - BACOVA_02686 0.77 -0.6 93,138 - BACOVA_02686 0.77 -0.1 93,162 + BACOVA_02686 0.79 +0.2 93,162 + BACOVA_02686 0.79 -1.0 93,162 + BACOVA_02686 0.79 -0.9 93,164 + BACOVA_02686 0.79 +0.7 93,167 + BACOVA_02686 0.80 +1.2 93,168 - BACOVA_02686 0.80 -1.4 93,229 + BACOVA_02686 0.85 +0.1 93,230 - BACOVA_02686 0.85 +1.0 93,261 + BACOVA_02686 0.87 +0.6 93,261 + BACOVA_02686 0.87 +1.2 93,261 + BACOVA_02686 0.87 +0.8 93,266 - BACOVA_02686 0.88 -1.8 93,310 + -1.8 93,316 - -1.8 93,338 - +0.7 93,338 - -0.2 93,380 + -0.7 93,381 - +0.7 93,381 - -2.3 93,381 - +2.0 93,382 + -0.2 93,382 + -1.5 93,383 - -0.5 93,383 - +0.3 93,389 - +1.0 93,423 + +1.1 93,464 + -0.3 93,498 + +0.0 93,525 - BACOVA_02687 0.12 -2.4 93,528 + BACOVA_02687 0.12 +0.4 93,529 - BACOVA_02687 0.13 -3.1 93,613 - BACOVA_02687 0.22 -0.8 93,642 + BACOVA_02687 0.26 +0.6 93,642 + BACOVA_02687 0.26 +0.3 93,654 - BACOVA_02687 0.27 +1.1 93,670 + BACOVA_02687 0.29 -0.3 93,670 + BACOVA_02687 0.29 +0.0 93,671 - BACOVA_02687 0.29 +0.0 93,671 - BACOVA_02687 0.29 +0.5 93,672 + BACOVA_02687 0.29 +0.9 93,672 + BACOVA_02687 0.29 +0.7 93,672 + BACOVA_02687 0.29 +0.4 93,673 - BACOVA_02687 0.29 +0.1 93,698 + BACOVA_02687 0.32 -0.1 93,698 + BACOVA_02687 0.32 +0.4 93,712 - BACOVA_02687 0.34 -0.5 93,736 + BACOVA_02687 0.36 -1.0 93,736 + BACOVA_02687 0.36 +0.5 93,762 + BACOVA_02687 0.39 -0.3 93,762 + BACOVA_02687 0.39 -0.7 93,765 + BACOVA_02687 0.40 +0.0 93,769 - BACOVA_02687 0.40 -0.2 93,769 - BACOVA_02687 0.40 +1.1 93,806 + BACOVA_02687 0.44 +0.2 93,816 - BACOVA_02687 0.46 +0.2 93,863 + BACOVA_02687 0.51 -0.7 93,879 + BACOVA_02687 0.53 +0.7 93,896 - BACOVA_02687 0.55 -2.0 93,913 + BACOVA_02687 0.57 +1.6 93,913 + BACOVA_02687 0.57 +0.8 93,916 + BACOVA_02687 0.57 -0.8 93,916 + BACOVA_02687 0.57 +0.2 93,916 + BACOVA_02687 0.57 -1.7 93,917 - BACOVA_02687 0.57 -0.7 93,956 + BACOVA_02687 0.62 +1.0 93,956 + BACOVA_02687 0.62 +1.0 93,962 + BACOVA_02687 0.62 +0.1 93,963 - BACOVA_02687 0.62 -0.6 93,966 - BACOVA_02687 0.63 +0.4 93,983 - BACOVA_02687 0.65 +2.6 94,034 + BACOVA_02687 0.71 +0.9 94,082 + BACOVA_02687 0.76 -0.6 94,097 + BACOVA_02687 0.78 -1.2 94,104 + BACOVA_02687 0.79 -0.4 94,131 + BACOVA_02687 0.82 +1.5 94,134 + BACOVA_02687 0.82 -0.0 94,142 + BACOVA_02687 0.83 -0.4 94,164 - BACOVA_02687 0.86 -0.1 94,172 + BACOVA_02687 0.86 -0.2 94,192 + BACOVA_02687 0.89 -0.5 94,199 + BACOVA_02687 0.90 -0.6 94,201 + BACOVA_02687 0.90 +0.1 94,202 - BACOVA_02687 0.90 +0.1 94,202 - BACOVA_02687 0.90 -2.6 94,202 - BACOVA_02687 0.90 -1.1 94,214 + +0.8 94,263 - -2.2 94,273 - -0.1 94,316 + +0.6 94,317 - -1.0 94,360 + +1.2 94,388 - +0.4 94,438 - -1.5 94,444 + -1.0 94,449 + -0.5 94,449 + +0.4 94,450 - -2.0 94,450 - -0.8 94,459 - +0.1 94,463 - -0.4 94,466 - -0.8 94,487 - BACOVA_02688 0.14 +0.7 94,490 + BACOVA_02688 0.15 -1.1 94,491 - BACOVA_02688 0.16 +0.4 94,528 - BACOVA_02688 0.38 -0.3 94,607 - BACOVA_02688 0.85 -1.7 94,613 + BACOVA_02688 0.89 +0.5 94,624 - -3.1 94,655 - +1.0 94,681 - -0.3 94,681 - -2.2 94,705 + +0.1 94,706 - -1.0 94,709 - +0.5 94,709 - +1.4 94,780 + BACOVA_02689 0.24 +0.4 94,781 - BACOVA_02689 0.25 +0.3 94,781 - BACOVA_02689 0.25 -0.8 94,800 - BACOVA_02689 0.30 +0.6 94,800 - BACOVA_02689 0.30 +0.4 94,850 - BACOVA_02689 0.42 +0.1 94,859 - BACOVA_02689 0.44 -0.8 94,862 - BACOVA_02689 0.45 -0.5 94,882 + BACOVA_02689 0.50 -0.4 94,887 - BACOVA_02689 0.52 -0.3 94,908 + BACOVA_02689 0.57 -1.6 94,908 + BACOVA_02689 0.57 +0.9 94,937 + BACOVA_02689 0.64 +0.3 94,938 - BACOVA_02689 0.64 -0.8 94,952 + BACOVA_02689 0.68 +1.2 94,962 - BACOVA_02689 0.70 -0.3 94,962 - BACOVA_02689 0.70 -1.1 94,965 - BACOVA_02689 0.71 -0.1 95,035 + BACOVA_02689 0.89 +1.9 95,036 - BACOVA_02689 0.89 +1.0 95,036 - BACOVA_02689 0.89 +1.0 95,040 - +0.1 95,040 - +0.3 95,045 + +0.2 95,046 - +0.3 95,047 + +0.5 95,074 + +1.0 95,074 + +0.7 95,075 - +0.1 95,075 - -0.5 95,085 + +0.5 95,086 - -0.3 95,151 + +0.3 95,181 + +0.9 95,181 + +1.2 95,181 + -1.3 95,182 - +0.0 95,184 - -1.0 95,246 + +0.2 95,247 - +1.0 95,247 - -1.8 95,247 - -0.2 95,247 - -0.3 95,249 - -1.6 95,249 - -0.3 95,261 - -0.4 95,261 - +0.2 95,262 + +2.2 95,262 + -1.4
Or see this region's nucleotide sequence