Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02105 and BACOVA_02106 are separated by 257 nucleotides BACOVA_02106 and BACOVA_02107 are separated by 7 nucleotides
BACOVA_02105: BACOVA_02105 - acetyl xylan esterase (AXE1), at 440,669 to 441,967
_02105
BACOVA_02106: BACOVA_02106 - hypothetical protein, at 442,225 to 444,291
_02106
BACOVA_02107: BACOVA_02107 - hypothetical protein, at 444,299 to 446,167
_02107
Position (kb) 442
443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 441.447 kb on + strand, within BACOVA_02105 at 441.482 kb on + strand, within BACOVA_02105 at 441.619 kb on - strand, within BACOVA_02105 at 441.768 kb on - strand, within BACOVA_02105 at 441.768 kb on - strand, within BACOVA_02105 at 441.803 kb on + strand, within BACOVA_02105 at 441.840 kb on + strand at 441.911 kb on + strand at 441.912 kb on - strand at 441.968 kb on - strand at 441.968 kb on - strand at 441.968 kb on - strand at 441.968 kb on - strand at 442.000 kb on + strand at 442.003 kb on + strand at 442.003 kb on + strand at 442.004 kb on - strand at 442.004 kb on - strand at 442.023 kb on - strand at 442.023 kb on - strand at 442.025 kb on + strand at 442.074 kb on - strand at 442.133 kb on + strand at 442.180 kb on + strand at 442.203 kb on + strand at 442.204 kb on - strand at 442.204 kb on - strand at 442.204 kb on - strand at 442.234 kb on + strand at 442.235 kb on - strand at 442.241 kb on + strand at 442.247 kb on + strand at 442.248 kb on - strand at 442.273 kb on + strand at 442.286 kb on - strand at 442.383 kb on + strand at 442.384 kb on - strand at 442.393 kb on - strand at 442.427 kb on + strand at 442.538 kb on + strand, within BACOVA_02106 at 442.561 kb on - strand, within BACOVA_02106 at 442.563 kb on + strand, within BACOVA_02106 at 442.563 kb on + strand, within BACOVA_02106 at 442.565 kb on + strand, within BACOVA_02106 at 442.565 kb on + strand, within BACOVA_02106 at 442.566 kb on - strand, within BACOVA_02106 at 442.627 kb on - strand, within BACOVA_02106 at 442.683 kb on - strand, within BACOVA_02106 at 442.683 kb on - strand, within BACOVA_02106 at 442.704 kb on + strand, within BACOVA_02106 at 442.705 kb on - strand, within BACOVA_02106 at 442.707 kb on + strand, within BACOVA_02106 at 442.785 kb on - strand, within BACOVA_02106 at 442.787 kb on + strand, within BACOVA_02106 at 442.787 kb on + strand, within BACOVA_02106 at 442.787 kb on + strand, within BACOVA_02106 at 442.787 kb on + strand, within BACOVA_02106 at 442.787 kb on + strand, within BACOVA_02106 at 442.788 kb on - strand, within BACOVA_02106 at 442.788 kb on - strand, within BACOVA_02106 at 442.843 kb on - strand, within BACOVA_02106 at 442.843 kb on - strand, within BACOVA_02106 at 442.844 kb on + strand, within BACOVA_02106 at 442.844 kb on + strand, within BACOVA_02106 at 442.898 kb on + strand, within BACOVA_02106 at 442.960 kb on - strand, within BACOVA_02106 at 442.960 kb on - strand, within BACOVA_02106 at 443.000 kb on + strand, within BACOVA_02106 at 443.008 kb on - strand, within BACOVA_02106 at 443.010 kb on - strand, within BACOVA_02106 at 443.094 kb on + strand, within BACOVA_02106 at 443.287 kb on + strand, within BACOVA_02106 at 443.288 kb on - strand, within BACOVA_02106 at 443.315 kb on - strand, within BACOVA_02106 at 443.315 kb on - strand, within BACOVA_02106 at 443.346 kb on + strand, within BACOVA_02106 at 443.347 kb on - strand, within BACOVA_02106 at 443.355 kb on + strand, within BACOVA_02106 at 443.356 kb on - strand, within BACOVA_02106 at 443.418 kb on + strand, within BACOVA_02106 at 443.445 kb on - strand, within BACOVA_02106 at 443.445 kb on - strand, within BACOVA_02106 at 443.445 kb on - strand, within BACOVA_02106 at 443.526 kb on + strand, within BACOVA_02106 at 443.527 kb on - strand, within BACOVA_02106 at 443.570 kb on - strand, within BACOVA_02106 at 443.622 kb on + strand, within BACOVA_02106 at 443.626 kb on + strand, within BACOVA_02106 at 443.657 kb on + strand, within BACOVA_02106 at 443.657 kb on + strand, within BACOVA_02106 at 443.658 kb on - strand, within BACOVA_02106 at 443.661 kb on + strand, within BACOVA_02106 at 443.661 kb on + strand, within BACOVA_02106 at 443.662 kb on - strand, within BACOVA_02106 at 443.662 kb on - strand, within BACOVA_02106 at 443.673 kb on - strand, within BACOVA_02106 at 443.685 kb on + strand, within BACOVA_02106 at 443.735 kb on - strand, within BACOVA_02106 at 443.808 kb on + strand, within BACOVA_02106 at 443.895 kb on - strand, within BACOVA_02106 at 443.927 kb on + strand, within BACOVA_02106 at 443.947 kb on + strand, within BACOVA_02106 at 443.948 kb on - strand, within BACOVA_02106 at 443.950 kb on - strand, within BACOVA_02106 at 443.990 kb on + strand, within BACOVA_02106 at 443.990 kb on + strand, within BACOVA_02106 at 444.173 kb on + strand at 444.173 kb on + strand at 444.174 kb on - strand at 444.178 kb on - strand at 444.178 kb on - strand at 444.186 kb on + strand at 444.186 kb on + strand at 444.186 kb on + strand at 444.187 kb on - strand at 444.187 kb on - strand at 444.191 kb on - strand at 444.191 kb on - strand at 444.216 kb on - strand at 444.218 kb on + strand at 444.219 kb on - strand at 444.246 kb on + strand at 444.251 kb on - strand at 444.266 kb on - strand at 444.291 kb on + strand at 444.292 kb on - strand at 444.429 kb on + strand at 444.430 kb on - strand at 444.433 kb on + strand at 444.434 kb on - strand at 444.451 kb on + strand at 444.452 kb on - strand at 444.478 kb on + strand at 444.478 kb on + strand at 444.479 kb on - strand at 444.483 kb on - strand at 444.483 kb on - strand at 444.483 kb on - strand at 444.483 kb on - strand at 444.485 kb on + strand at 444.508 kb on + strand, within BACOVA_02107 at 444.508 kb on + strand, within BACOVA_02107 at 444.521 kb on + strand, within BACOVA_02107 at 444.557 kb on - strand, within BACOVA_02107 at 444.618 kb on + strand, within BACOVA_02107 at 444.758 kb on + strand, within BACOVA_02107 at 444.759 kb on - strand, within BACOVA_02107 at 444.759 kb on - strand, within BACOVA_02107 at 444.760 kb on + strand, within BACOVA_02107 at 444.776 kb on + strand, within BACOVA_02107 at 444.777 kb on - strand, within BACOVA_02107 at 444.777 kb on - strand, within BACOVA_02107 at 444.780 kb on + strand, within BACOVA_02107 at 444.780 kb on + strand, within BACOVA_02107 at 444.823 kb on - strand, within BACOVA_02107 at 444.823 kb on - strand, within BACOVA_02107 at 444.860 kb on - strand, within BACOVA_02107 at 444.869 kb on - strand, within BACOVA_02107 at 444.901 kb on - strand, within BACOVA_02107 at 444.903 kb on - strand, within BACOVA_02107 at 444.903 kb on - strand, within BACOVA_02107 at 444.903 kb on - strand, within BACOVA_02107 at 444.989 kb on - strand, within BACOVA_02107 at 444.989 kb on - strand, within BACOVA_02107 at 445.063 kb on + strand, within BACOVA_02107 at 445.069 kb on + strand, within BACOVA_02107 at 445.070 kb on - strand, within BACOVA_02107 at 445.072 kb on + strand, within BACOVA_02107 at 445.074 kb on + strand, within BACOVA_02107 at 445.084 kb on + strand, within BACOVA_02107 at 445.085 kb on - strand, within BACOVA_02107 at 445.137 kb on + strand, within BACOVA_02107 at 445.190 kb on + strand, within BACOVA_02107 at 445.196 kb on - strand, within BACOVA_02107 at 445.196 kb on - strand, within BACOVA_02107 at 445.196 kb on - strand, within BACOVA_02107
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 441,447 + BACOVA_02105 0.60 -0.4 441,482 + BACOVA_02105 0.63 +1.6 441,619 - BACOVA_02105 0.73 -0.2 441,768 - BACOVA_02105 0.85 +0.3 441,768 - BACOVA_02105 0.85 -2.9 441,803 + BACOVA_02105 0.87 +0.1 441,840 + -0.3 441,911 + -0.6 441,912 - -0.2 441,968 - +0.3 441,968 - -0.1 441,968 - -0.3 441,968 - +0.6 442,000 + -0.2 442,003 + +0.1 442,003 + +0.7 442,004 - -0.0 442,004 - -0.6 442,023 - -0.1 442,023 - -0.5 442,025 + -1.0 442,074 - -1.4 442,133 + -0.2 442,180 + +0.6 442,203 + -0.2 442,204 - +0.8 442,204 - -1.5 442,204 - -0.8 442,234 + -0.6 442,235 - -0.0 442,241 + -0.5 442,247 + -0.1 442,248 - -2.2 442,273 + +0.5 442,286 - -1.1 442,383 + -1.0 442,384 - -1.5 442,393 - -2.3 442,427 + +0.6 442,538 + BACOVA_02106 0.15 +1.6 442,561 - BACOVA_02106 0.16 -1.0 442,563 + BACOVA_02106 0.16 -1.1 442,563 + BACOVA_02106 0.16 -0.5 442,565 + BACOVA_02106 0.16 -2.1 442,565 + BACOVA_02106 0.16 -1.2 442,566 - BACOVA_02106 0.16 -0.8 442,627 - BACOVA_02106 0.19 -0.4 442,683 - BACOVA_02106 0.22 +0.1 442,683 - BACOVA_02106 0.22 -1.7 442,704 + BACOVA_02106 0.23 +0.7 442,705 - BACOVA_02106 0.23 -1.3 442,707 + BACOVA_02106 0.23 -0.0 442,785 - BACOVA_02106 0.27 -0.6 442,787 + BACOVA_02106 0.27 +0.2 442,787 + BACOVA_02106 0.27 -1.3 442,787 + BACOVA_02106 0.27 -1.6 442,787 + BACOVA_02106 0.27 -0.7 442,787 + BACOVA_02106 0.27 -2.9 442,788 - BACOVA_02106 0.27 +0.9 442,788 - BACOVA_02106 0.27 -0.2 442,843 - BACOVA_02106 0.30 +1.8 442,843 - BACOVA_02106 0.30 -0.8 442,844 + BACOVA_02106 0.30 +1.2 442,844 + BACOVA_02106 0.30 -2.4 442,898 + BACOVA_02106 0.33 -1.4 442,960 - BACOVA_02106 0.36 +0.7 442,960 - BACOVA_02106 0.36 +0.1 443,000 + BACOVA_02106 0.37 +0.6 443,008 - BACOVA_02106 0.38 -1.0 443,010 - BACOVA_02106 0.38 -0.3 443,094 + BACOVA_02106 0.42 +0.1 443,287 + BACOVA_02106 0.51 -2.1 443,288 - BACOVA_02106 0.51 -0.1 443,315 - BACOVA_02106 0.53 +0.4 443,315 - BACOVA_02106 0.53 +1.0 443,346 + BACOVA_02106 0.54 +0.5 443,347 - BACOVA_02106 0.54 -0.7 443,355 + BACOVA_02106 0.55 -2.3 443,356 - BACOVA_02106 0.55 -0.1 443,418 + BACOVA_02106 0.58 +0.1 443,445 - BACOVA_02106 0.59 +0.3 443,445 - BACOVA_02106 0.59 -2.0 443,445 - BACOVA_02106 0.59 -1.5 443,526 + BACOVA_02106 0.63 +0.8 443,527 - BACOVA_02106 0.63 -0.3 443,570 - BACOVA_02106 0.65 -2.6 443,622 + BACOVA_02106 0.68 -0.6 443,626 + BACOVA_02106 0.68 +0.3 443,657 + BACOVA_02106 0.69 -0.0 443,657 + BACOVA_02106 0.69 -0.7 443,658 - BACOVA_02106 0.69 +0.6 443,661 + BACOVA_02106 0.69 -0.2 443,661 + BACOVA_02106 0.69 -0.2 443,662 - BACOVA_02106 0.70 -0.2 443,662 - BACOVA_02106 0.70 -0.4 443,673 - BACOVA_02106 0.70 +0.5 443,685 + BACOVA_02106 0.71 +0.9 443,735 - BACOVA_02106 0.73 +0.1 443,808 + BACOVA_02106 0.77 +0.1 443,895 - BACOVA_02106 0.81 -1.3 443,927 + BACOVA_02106 0.82 +0.2 443,947 + BACOVA_02106 0.83 -1.6 443,948 - BACOVA_02106 0.83 -0.1 443,950 - BACOVA_02106 0.83 +0.9 443,990 + BACOVA_02106 0.85 -1.8 443,990 + BACOVA_02106 0.85 -1.1 444,173 + +1.1 444,173 + +0.7 444,174 - +1.2 444,178 - +0.8 444,178 - +0.5 444,186 + -0.2 444,186 + -2.1 444,186 + -0.0 444,187 - +0.8 444,187 - -0.9 444,191 - +0.5 444,191 - +1.4 444,216 - -0.0 444,218 + -0.9 444,219 - -0.2 444,246 + +0.7 444,251 - -0.2 444,266 - -0.3 444,291 + -1.4 444,292 - -0.4 444,429 + +0.2 444,430 - -1.3 444,433 + -1.6 444,434 - -0.2 444,451 + +0.1 444,452 - -1.3 444,478 + -0.3 444,478 + -0.1 444,479 - -0.7 444,483 - -0.8 444,483 - -0.7 444,483 - +0.2 444,483 - -0.1 444,485 + -0.2 444,508 + BACOVA_02107 0.11 +0.1 444,508 + BACOVA_02107 0.11 +0.3 444,521 + BACOVA_02107 0.12 -0.2 444,557 - BACOVA_02107 0.14 -0.2 444,618 + BACOVA_02107 0.17 -0.4 444,758 + BACOVA_02107 0.25 +0.7 444,759 - BACOVA_02107 0.25 -2.1 444,759 - BACOVA_02107 0.25 -1.4 444,760 + BACOVA_02107 0.25 -0.6 444,776 + BACOVA_02107 0.26 -0.3 444,777 - BACOVA_02107 0.26 -0.4 444,777 - BACOVA_02107 0.26 -1.9 444,780 + BACOVA_02107 0.26 +0.1 444,780 + BACOVA_02107 0.26 -1.4 444,823 - BACOVA_02107 0.28 -1.1 444,823 - BACOVA_02107 0.28 -2.6 444,860 - BACOVA_02107 0.30 -0.2 444,869 - BACOVA_02107 0.30 -1.3 444,901 - BACOVA_02107 0.32 -0.8 444,903 - BACOVA_02107 0.32 +0.2 444,903 - BACOVA_02107 0.32 -0.6 444,903 - BACOVA_02107 0.32 -2.3 444,989 - BACOVA_02107 0.37 -0.2 444,989 - BACOVA_02107 0.37 -1.2 445,063 + BACOVA_02107 0.41 -0.1 445,069 + BACOVA_02107 0.41 +0.7 445,070 - BACOVA_02107 0.41 -1.6 445,072 + BACOVA_02107 0.41 -0.0 445,074 + BACOVA_02107 0.41 -0.1 445,084 + BACOVA_02107 0.42 -1.6 445,085 - BACOVA_02107 0.42 -0.3 445,137 + BACOVA_02107 0.45 +0.2 445,190 + BACOVA_02107 0.48 +0.1 445,196 - BACOVA_02107 0.48 -0.0 445,196 - BACOVA_02107 0.48 -1.3 445,196 - BACOVA_02107 0.48 +0.5
Or see this region's nucleotide sequence