Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00848

Experiment: Peptone 2.5 mg/mL (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00847 and BACOVA_00848 are separated by 217 nucleotidesBACOVA_00848 and BACOVA_00849 are separated by 76 nucleotidesBACOVA_00849 and BACOVA_00850 are separated by 216 nucleotides BACOVA_00847: BACOVA_00847 - putative ribosome small subunit-dependent GTPase A, at 105,892 to 106,980 _00847 BACOVA_00848: BACOVA_00848 - hypothetical protein, at 107,198 to 107,908 _00848 BACOVA_00849: BACOVA_00849 - hypothetical protein, at 107,985 to 108,479 _00849 BACOVA_00850: BACOVA_00850 - RteC protein, at 108,696 to 109,535 _00850 Position (kb) 107 108Strain fitness (log2 ratio) -2 -1 0 1 2at 106.201 kb on + strand, within BACOVA_00847at 106.249 kb on - strand, within BACOVA_00847at 106.249 kb on - strand, within BACOVA_00847at 106.277 kb on - strand, within BACOVA_00847at 106.277 kb on - strand, within BACOVA_00847at 106.277 kb on - strand, within BACOVA_00847at 106.277 kb on - strand, within BACOVA_00847at 106.298 kb on + strand, within BACOVA_00847at 106.319 kb on - strand, within BACOVA_00847at 106.452 kb on + strand, within BACOVA_00847at 106.452 kb on + strand, within BACOVA_00847at 106.459 kb on + strand, within BACOVA_00847at 106.459 kb on + strand, within BACOVA_00847at 106.460 kb on - strand, within BACOVA_00847at 106.503 kb on + strand, within BACOVA_00847at 106.504 kb on - strand, within BACOVA_00847at 106.506 kb on + strand, within BACOVA_00847at 106.507 kb on - strand, within BACOVA_00847at 106.511 kb on - strand, within BACOVA_00847at 106.538 kb on - strand, within BACOVA_00847at 106.552 kb on - strand, within BACOVA_00847at 106.620 kb on - strand, within BACOVA_00847at 106.668 kb on - strand, within BACOVA_00847at 106.688 kb on - strand, within BACOVA_00847at 106.692 kb on + strand, within BACOVA_00847at 106.693 kb on - strand, within BACOVA_00847at 106.693 kb on - strand, within BACOVA_00847at 106.693 kb on - strand, within BACOVA_00847at 106.693 kb on - strand, within BACOVA_00847at 106.695 kb on - strand, within BACOVA_00847at 106.697 kb on - strand, within BACOVA_00847at 106.701 kb on + strand, within BACOVA_00847at 106.702 kb on - strand, within BACOVA_00847at 106.702 kb on - strand, within BACOVA_00847at 106.711 kb on - strand, within BACOVA_00847at 106.749 kb on + strand, within BACOVA_00847at 106.778 kb on + strand, within BACOVA_00847at 106.779 kb on - strand, within BACOVA_00847at 106.779 kb on - strand, within BACOVA_00847at 106.835 kb on + strand, within BACOVA_00847at 106.843 kb on - strand, within BACOVA_00847at 106.843 kb on - strand, within BACOVA_00847at 106.849 kb on + strand, within BACOVA_00847at 106.850 kb on - strand, within BACOVA_00847at 106.853 kb on - strand, within BACOVA_00847at 106.859 kb on - strand, within BACOVA_00847at 106.861 kb on - strand, within BACOVA_00847at 106.861 kb on - strand, within BACOVA_00847at 106.861 kb on - strand, within BACOVA_00847at 106.883 kb on + strandat 106.884 kb on - strandat 106.900 kb on + strandat 106.910 kb on - strandat 106.929 kb on - strandat 106.929 kb on - strandat 106.986 kb on + strandat 106.991 kb on + strandat 106.993 kb on + strandat 107.001 kb on - strandat 107.008 kb on - strandat 107.008 kb on - strandat 107.028 kb on + strandat 107.039 kb on + strandat 107.039 kb on + strandat 107.048 kb on + strandat 107.071 kb on + strandat 107.124 kb on - strandat 107.166 kb on - strandat 107.188 kb on + strandat 107.193 kb on + strandat 107.194 kb on - strandat 107.194 kb on - strandat 107.203 kb on + strandat 107.234 kb on + strandat 107.235 kb on - strandat 107.235 kb on - strandat 107.279 kb on + strand, within BACOVA_00848at 107.279 kb on + strand, within BACOVA_00848at 107.279 kb on + strand, within BACOVA_00848at 107.279 kb on + strand, within BACOVA_00848at 107.279 kb on + strand, within BACOVA_00848at 107.280 kb on - strand, within BACOVA_00848at 107.280 kb on - strand, within BACOVA_00848at 107.307 kb on + strand, within BACOVA_00848at 107.316 kb on - strand, within BACOVA_00848at 107.320 kb on + strand, within BACOVA_00848at 107.386 kb on - strand, within BACOVA_00848at 107.425 kb on + strand, within BACOVA_00848at 107.440 kb on - strand, within BACOVA_00848at 107.497 kb on + strand, within BACOVA_00848at 107.498 kb on - strand, within BACOVA_00848at 107.515 kb on + strand, within BACOVA_00848at 107.516 kb on - strand, within BACOVA_00848at 107.521 kb on + strand, within BACOVA_00848at 107.521 kb on + strand, within BACOVA_00848at 107.522 kb on - strand, within BACOVA_00848at 107.561 kb on - strand, within BACOVA_00848at 107.564 kb on + strand, within BACOVA_00848at 107.565 kb on - strand, within BACOVA_00848at 107.639 kb on + strand, within BACOVA_00848at 107.672 kb on + strand, within BACOVA_00848at 107.722 kb on + strand, within BACOVA_00848at 107.731 kb on - strand, within BACOVA_00848at 107.731 kb on - strand, within BACOVA_00848at 107.745 kb on + strand, within BACOVA_00848at 107.792 kb on + strand, within BACOVA_00848at 107.793 kb on - strand, within BACOVA_00848at 107.820 kb on + strand, within BACOVA_00848at 107.879 kb on + strandat 107.879 kb on + strandat 107.880 kb on - strandat 107.917 kb on + strandat 107.918 kb on - strandat 107.974 kb on + strandat 108.026 kb on + strandat 108.026 kb on + strandat 108.083 kb on + strand, within BACOVA_00849at 108.141 kb on + strand, within BACOVA_00849at 108.192 kb on - strand, within BACOVA_00849at 108.195 kb on + strand, within BACOVA_00849at 108.207 kb on - strand, within BACOVA_00849at 108.213 kb on - strand, within BACOVA_00849at 108.253 kb on + strand, within BACOVA_00849at 108.274 kb on - strand, within BACOVA_00849at 108.345 kb on - strand, within BACOVA_00849at 108.368 kb on + strand, within BACOVA_00849at 108.387 kb on - strand, within BACOVA_00849at 108.407 kb on + strand, within BACOVA_00849at 108.407 kb on + strand, within BACOVA_00849at 108.408 kb on - strand, within BACOVA_00849at 108.410 kb on + strand, within BACOVA_00849at 108.411 kb on - strand, within BACOVA_00849at 108.438 kb on - strandat 108.438 kb on - strandat 108.439 kb on + strandat 108.534 kb on - strandat 108.538 kb on - strandat 108.562 kb on - strandat 108.572 kb on + strandat 108.573 kb on - strandat 108.588 kb on - strandat 108.591 kb on + strandat 108.592 kb on - strandat 108.594 kb on - strandat 108.594 kb on - strandat 108.628 kb on + strandat 108.652 kb on - strandat 108.661 kb on + strandat 108.724 kb on - strandat 108.724 kb on - strandat 108.725 kb on + strandat 108.726 kb on + strandat 108.726 kb on - strandat 108.794 kb on + strand, within BACOVA_00850at 108.811 kb on - strand, within BACOVA_00850at 108.821 kb on + strand, within BACOVA_00850at 108.822 kb on - strand, within BACOVA_00850at 108.872 kb on + strand, within BACOVA_00850at 108.873 kb on - strand, within BACOVA_00850at 108.875 kb on + strand, within BACOVA_00850at 108.892 kb on + strand, within BACOVA_00850at 108.892 kb on + strand, within BACOVA_00850at 108.905 kb on + strand, within BACOVA_00850at 108.905 kb on + strand, within BACOVA_00850at 108.906 kb on - strand, within BACOVA_00850

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Per-strain Table

Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media
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106,201 + BACOVA_00847 0.28 +0.4
106,249 - BACOVA_00847 0.33 -0.4
106,249 - BACOVA_00847 0.33 +1.3
106,277 - BACOVA_00847 0.35 -0.5
106,277 - BACOVA_00847 0.35 +1.4
106,277 - BACOVA_00847 0.35 +0.4
106,277 - BACOVA_00847 0.35 -1.0
106,298 + BACOVA_00847 0.37 +0.2
106,319 - BACOVA_00847 0.39 +0.5
106,452 + BACOVA_00847 0.51 +0.1
106,452 + BACOVA_00847 0.51 +0.4
106,459 + BACOVA_00847 0.52 -0.3
106,459 + BACOVA_00847 0.52 +0.2
106,460 - BACOVA_00847 0.52 -0.6
106,503 + BACOVA_00847 0.56 -0.5
106,504 - BACOVA_00847 0.56 -0.9
106,506 + BACOVA_00847 0.56 -0.7
106,507 - BACOVA_00847 0.56 -0.0
106,511 - BACOVA_00847 0.57 -1.0
106,538 - BACOVA_00847 0.59 -1.3
106,552 - BACOVA_00847 0.61 +1.4
106,620 - BACOVA_00847 0.67 +1.2
106,668 - BACOVA_00847 0.71 +0.1
106,688 - BACOVA_00847 0.73 +0.7
106,692 + BACOVA_00847 0.73 -0.2
106,693 - BACOVA_00847 0.74 +0.4
106,693 - BACOVA_00847 0.74 +0.7
106,693 - BACOVA_00847 0.74 -2.6
106,693 - BACOVA_00847 0.74 -0.6
106,695 - BACOVA_00847 0.74 -1.2
106,697 - BACOVA_00847 0.74 -1.4
106,701 + BACOVA_00847 0.74 -0.0
106,702 - BACOVA_00847 0.74 -0.8
106,702 - BACOVA_00847 0.74 -1.6
106,711 - BACOVA_00847 0.75 -1.7
106,749 + BACOVA_00847 0.79 -0.5
106,778 + BACOVA_00847 0.81 +1.4
106,779 - BACOVA_00847 0.81 +2.6
106,779 - BACOVA_00847 0.81 -0.0
106,835 + BACOVA_00847 0.87 +0.4
106,843 - BACOVA_00847 0.87 +1.4
106,843 - BACOVA_00847 0.87 +0.4
106,849 + BACOVA_00847 0.88 +1.2
106,850 - BACOVA_00847 0.88 -1.5
106,853 - BACOVA_00847 0.88 +0.8
106,859 - BACOVA_00847 0.89 -0.7
106,861 - BACOVA_00847 0.89 -1.4
106,861 - BACOVA_00847 0.89 -0.3
106,861 - BACOVA_00847 0.89 -0.6
106,883 + -1.1
106,884 - +1.5
106,900 + +0.9
106,910 - -0.6
106,929 - +0.2
106,929 - +0.0
106,986 + -1.6
106,991 + -0.9
106,993 + +0.5
107,001 - -0.1
107,008 - +1.1
107,008 - +0.5
107,028 + -0.6
107,039 + -2.2
107,039 + +0.2
107,048 + -1.7
107,071 + +0.1
107,124 - +0.4
107,166 - +0.0
107,188 + +0.3
107,193 + +1.5
107,194 - +1.3
107,194 - +0.4
107,203 + -0.8
107,234 + -0.2
107,235 - -0.2
107,235 - +1.0
107,279 + BACOVA_00848 0.11 -0.6
107,279 + BACOVA_00848 0.11 +0.3
107,279 + BACOVA_00848 0.11 -2.7
107,279 + BACOVA_00848 0.11 -1.7
107,279 + BACOVA_00848 0.11 +0.5
107,280 - BACOVA_00848 0.12 -1.8
107,280 - BACOVA_00848 0.12 -2.2
107,307 + BACOVA_00848 0.15 -0.0
107,316 - BACOVA_00848 0.17 +1.3
107,320 + BACOVA_00848 0.17 +0.6
107,386 - BACOVA_00848 0.26 +0.0
107,425 + BACOVA_00848 0.32 -0.3
107,440 - BACOVA_00848 0.34 -0.0
107,497 + BACOVA_00848 0.42 +0.5
107,498 - BACOVA_00848 0.42 -0.8
107,515 + BACOVA_00848 0.45 -0.5
107,516 - BACOVA_00848 0.45 +0.7
107,521 + BACOVA_00848 0.45 +0.7
107,521 + BACOVA_00848 0.45 +0.4
107,522 - BACOVA_00848 0.46 +0.9
107,561 - BACOVA_00848 0.51 -0.1
107,564 + BACOVA_00848 0.51 +0.6
107,565 - BACOVA_00848 0.52 -0.6
107,639 + BACOVA_00848 0.62 +0.6
107,672 + BACOVA_00848 0.67 -1.2
107,722 + BACOVA_00848 0.74 -0.3
107,731 - BACOVA_00848 0.75 +1.3
107,731 - BACOVA_00848 0.75 +0.5
107,745 + BACOVA_00848 0.77 +0.6
107,792 + BACOVA_00848 0.84 -0.0
107,793 - BACOVA_00848 0.84 +0.4
107,820 + BACOVA_00848 0.87 -1.2
107,879 + +0.2
107,879 + +1.0
107,880 - -0.0
107,917 + -0.0
107,918 - +0.2
107,974 + -0.8
108,026 + +0.3
108,026 + -1.0
108,083 + BACOVA_00849 0.20 +0.4
108,141 + BACOVA_00849 0.32 +1.4
108,192 - BACOVA_00849 0.42 +0.1
108,195 + BACOVA_00849 0.42 +1.0
108,207 - BACOVA_00849 0.45 +0.6
108,213 - BACOVA_00849 0.46 -0.5
108,253 + BACOVA_00849 0.54 -1.5
108,274 - BACOVA_00849 0.58 -1.6
108,345 - BACOVA_00849 0.73 -0.0
108,368 + BACOVA_00849 0.77 +1.2
108,387 - BACOVA_00849 0.81 -1.4
108,407 + BACOVA_00849 0.85 -0.3
108,407 + BACOVA_00849 0.85 -0.8
108,408 - BACOVA_00849 0.85 +1.4
108,410 + BACOVA_00849 0.86 +0.3
108,411 - BACOVA_00849 0.86 +0.7
108,438 - -0.5
108,438 - -0.2
108,439 + -1.0
108,534 - -0.8
108,538 - +0.8
108,562 - +0.6
108,572 + +0.4
108,573 - +0.3
108,588 - +0.2
108,591 + +1.8
108,592 - -0.5
108,594 - +0.1
108,594 - -0.4
108,628 + +0.3
108,652 - +1.2
108,661 + -1.0
108,724 - +0.0
108,724 - +0.5
108,725 + -0.3
108,726 + -0.8
108,726 - +0.6
108,794 + BACOVA_00850 0.12 -1.8
108,811 - BACOVA_00850 0.14 -0.6
108,821 + BACOVA_00850 0.15 -0.4
108,822 - BACOVA_00850 0.15 -0.4
108,872 + BACOVA_00850 0.21 -1.8
108,873 - BACOVA_00850 0.21 +0.3
108,875 + BACOVA_00850 0.21 -2.1
108,892 + BACOVA_00850 0.23 -1.4
108,892 + BACOVA_00850 0.23 -0.2
108,905 + BACOVA_00850 0.25 -0.9
108,905 + BACOVA_00850 0.25 -0.6
108,906 - BACOVA_00850 0.25 -0.0

Or see this region's nucleotide sequence