Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00847

Experiment: Peptone 2.5 mg/mL (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00846 and BACOVA_00847 are separated by 531 nucleotidesBACOVA_00847 and BACOVA_00848 are separated by 217 nucleotides BACOVA_00846: BACOVA_00846 - hypothetical protein, at 103,114 to 105,360 _00846 BACOVA_00847: BACOVA_00847 - putative ribosome small subunit-dependent GTPase A, at 105,892 to 106,980 _00847 BACOVA_00848: BACOVA_00848 - hypothetical protein, at 107,198 to 107,908 _00848 Position (kb) 105 106 107Strain fitness (log2 ratio) -2 -1 0 1 2 3at 104.902 kb on - strand, within BACOVA_00846at 104.919 kb on - strand, within BACOVA_00846at 104.925 kb on + strand, within BACOVA_00846at 104.970 kb on - strand, within BACOVA_00846at 104.970 kb on - strand, within BACOVA_00846at 104.970 kb on - strand, within BACOVA_00846at 105.017 kb on - strand, within BACOVA_00846at 105.060 kb on + strand, within BACOVA_00846at 105.094 kb on + strand, within BACOVA_00846at 105.094 kb on + strand, within BACOVA_00846at 105.094 kb on + strand, within BACOVA_00846at 105.094 kb on + strand, within BACOVA_00846at 105.095 kb on - strand, within BACOVA_00846at 105.095 kb on - strand, within BACOVA_00846at 105.095 kb on - strand, within BACOVA_00846at 105.225 kb on + strandat 105.225 kb on + strandat 105.225 kb on + strandat 105.225 kb on + strandat 105.226 kb on - strandat 105.226 kb on - strandat 105.226 kb on - strandat 105.226 kb on - strandat 105.250 kb on + strandat 105.264 kb on + strandat 105.314 kb on + strandat 105.447 kb on - strandat 105.553 kb on + strandat 105.559 kb on + strandat 105.560 kb on - strandat 105.561 kb on + strandat 105.561 kb on + strandat 105.561 kb on + strandat 105.562 kb on - strandat 105.618 kb on + strandat 105.626 kb on - strandat 105.663 kb on + strandat 105.663 kb on + strandat 105.664 kb on - strandat 105.664 kb on - strandat 105.673 kb on + strandat 105.697 kb on - strandat 105.722 kb on - strandat 105.732 kb on - strandat 105.746 kb on + strandat 105.747 kb on - strandat 105.747 kb on - strandat 105.755 kb on - strandat 105.795 kb on + strandat 105.795 kb on + strandat 105.869 kb on - strandat 105.882 kb on + strandat 105.906 kb on + strandat 105.916 kb on + strandat 105.925 kb on + strandat 106.026 kb on + strand, within BACOVA_00847at 106.026 kb on + strand, within BACOVA_00847at 106.028 kb on + strand, within BACOVA_00847at 106.136 kb on - strand, within BACOVA_00847at 106.201 kb on + strand, within BACOVA_00847at 106.249 kb on - strand, within BACOVA_00847at 106.249 kb on - strand, within BACOVA_00847at 106.277 kb on - strand, within BACOVA_00847at 106.277 kb on - strand, within BACOVA_00847at 106.277 kb on - strand, within BACOVA_00847at 106.277 kb on - strand, within BACOVA_00847at 106.298 kb on + strand, within BACOVA_00847at 106.319 kb on - strand, within BACOVA_00847at 106.452 kb on + strand, within BACOVA_00847at 106.452 kb on + strand, within BACOVA_00847at 106.459 kb on + strand, within BACOVA_00847at 106.459 kb on + strand, within BACOVA_00847at 106.460 kb on - strand, within BACOVA_00847at 106.503 kb on + strand, within BACOVA_00847at 106.504 kb on - strand, within BACOVA_00847at 106.506 kb on + strand, within BACOVA_00847at 106.507 kb on - strand, within BACOVA_00847at 106.511 kb on - strand, within BACOVA_00847at 106.538 kb on - strand, within BACOVA_00847at 106.552 kb on - strand, within BACOVA_00847at 106.620 kb on - strand, within BACOVA_00847at 106.668 kb on - strand, within BACOVA_00847at 106.688 kb on - strand, within BACOVA_00847at 106.692 kb on + strand, within BACOVA_00847at 106.693 kb on - strand, within BACOVA_00847at 106.693 kb on - strand, within BACOVA_00847at 106.693 kb on - strand, within BACOVA_00847at 106.693 kb on - strand, within BACOVA_00847at 106.695 kb on - strand, within BACOVA_00847at 106.697 kb on - strand, within BACOVA_00847at 106.701 kb on + strand, within BACOVA_00847at 106.702 kb on - strand, within BACOVA_00847at 106.702 kb on - strand, within BACOVA_00847at 106.711 kb on - strand, within BACOVA_00847at 106.749 kb on + strand, within BACOVA_00847at 106.778 kb on + strand, within BACOVA_00847at 106.779 kb on - strand, within BACOVA_00847at 106.779 kb on - strand, within BACOVA_00847at 106.835 kb on + strand, within BACOVA_00847at 106.843 kb on - strand, within BACOVA_00847at 106.843 kb on - strand, within BACOVA_00847at 106.849 kb on + strand, within BACOVA_00847at 106.850 kb on - strand, within BACOVA_00847at 106.853 kb on - strand, within BACOVA_00847at 106.859 kb on - strand, within BACOVA_00847at 106.861 kb on - strand, within BACOVA_00847at 106.861 kb on - strand, within BACOVA_00847at 106.861 kb on - strand, within BACOVA_00847at 106.883 kb on + strandat 106.884 kb on - strandat 106.900 kb on + strandat 106.910 kb on - strandat 106.929 kb on - strandat 106.929 kb on - strandat 106.986 kb on + strandat 106.991 kb on + strandat 106.993 kb on + strandat 107.001 kb on - strandat 107.008 kb on - strandat 107.008 kb on - strandat 107.028 kb on + strandat 107.039 kb on + strandat 107.039 kb on + strandat 107.048 kb on + strandat 107.071 kb on + strandat 107.124 kb on - strandat 107.166 kb on - strandat 107.188 kb on + strandat 107.193 kb on + strandat 107.194 kb on - strandat 107.194 kb on - strandat 107.203 kb on + strandat 107.234 kb on + strandat 107.235 kb on - strandat 107.235 kb on - strandat 107.279 kb on + strand, within BACOVA_00848at 107.279 kb on + strand, within BACOVA_00848at 107.279 kb on + strand, within BACOVA_00848at 107.279 kb on + strand, within BACOVA_00848at 107.279 kb on + strand, within BACOVA_00848at 107.280 kb on - strand, within BACOVA_00848at 107.280 kb on - strand, within BACOVA_00848at 107.307 kb on + strand, within BACOVA_00848at 107.316 kb on - strand, within BACOVA_00848at 107.320 kb on + strand, within BACOVA_00848at 107.386 kb on - strand, within BACOVA_00848at 107.425 kb on + strand, within BACOVA_00848at 107.440 kb on - strand, within BACOVA_00848at 107.497 kb on + strand, within BACOVA_00848at 107.498 kb on - strand, within BACOVA_00848at 107.515 kb on + strand, within BACOVA_00848at 107.516 kb on - strand, within BACOVA_00848at 107.521 kb on + strand, within BACOVA_00848at 107.521 kb on + strand, within BACOVA_00848at 107.522 kb on - strand, within BACOVA_00848at 107.561 kb on - strand, within BACOVA_00848at 107.564 kb on + strand, within BACOVA_00848at 107.565 kb on - strand, within BACOVA_00848at 107.639 kb on + strand, within BACOVA_00848at 107.672 kb on + strand, within BACOVA_00848at 107.722 kb on + strand, within BACOVA_00848at 107.731 kb on - strand, within BACOVA_00848at 107.731 kb on - strand, within BACOVA_00848at 107.745 kb on + strand, within BACOVA_00848at 107.792 kb on + strand, within BACOVA_00848at 107.793 kb on - strand, within BACOVA_00848at 107.820 kb on + strand, within BACOVA_00848at 107.879 kb on + strandat 107.879 kb on + strandat 107.880 kb on - strandat 107.917 kb on + strandat 107.918 kb on - strandat 107.974 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media
remove
104,902 - BACOVA_00846 0.80 +0.1
104,919 - BACOVA_00846 0.80 +1.6
104,925 + BACOVA_00846 0.81 -1.4
104,970 - BACOVA_00846 0.83 +1.2
104,970 - BACOVA_00846 0.83 -0.0
104,970 - BACOVA_00846 0.83 -0.8
105,017 - BACOVA_00846 0.85 -0.0
105,060 + BACOVA_00846 0.87 +0.3
105,094 + BACOVA_00846 0.88 -0.3
105,094 + BACOVA_00846 0.88 +0.1
105,094 + BACOVA_00846 0.88 -1.0
105,094 + BACOVA_00846 0.88 -2.0
105,095 - BACOVA_00846 0.88 -0.4
105,095 - BACOVA_00846 0.88 -1.0
105,095 - BACOVA_00846 0.88 -0.2
105,225 + -0.5
105,225 + -0.3
105,225 + -0.6
105,225 + +1.0
105,226 - -0.7
105,226 - -1.3
105,226 - -1.8
105,226 - +0.2
105,250 + +0.4
105,264 + +0.4
105,314 + +0.9
105,447 - -1.0
105,553 + -0.4
105,559 + +2.0
105,560 - +3.3
105,561 + -0.9
105,561 + -1.5
105,561 + -0.1
105,562 - +0.0
105,618 + -0.8
105,626 - -1.0
105,663 + -0.0
105,663 + +1.1
105,664 - +0.6
105,664 - +0.1
105,673 + -0.2
105,697 - -0.6
105,722 - +0.6
105,732 - +0.1
105,746 + -0.3
105,747 - -2.4
105,747 - +1.1
105,755 - +0.5
105,795 + +1.5
105,795 + -1.0
105,869 - +0.2
105,882 + -0.9
105,906 + +0.9
105,916 + +0.9
105,925 + +0.1
106,026 + BACOVA_00847 0.12 -0.4
106,026 + BACOVA_00847 0.12 +1.5
106,028 + BACOVA_00847 0.12 +1.6
106,136 - BACOVA_00847 0.22 -0.2
106,201 + BACOVA_00847 0.28 +0.4
106,249 - BACOVA_00847 0.33 -0.4
106,249 - BACOVA_00847 0.33 +1.3
106,277 - BACOVA_00847 0.35 -0.5
106,277 - BACOVA_00847 0.35 +1.4
106,277 - BACOVA_00847 0.35 +0.4
106,277 - BACOVA_00847 0.35 -1.0
106,298 + BACOVA_00847 0.37 +0.2
106,319 - BACOVA_00847 0.39 +0.5
106,452 + BACOVA_00847 0.51 +0.1
106,452 + BACOVA_00847 0.51 +0.4
106,459 + BACOVA_00847 0.52 -0.3
106,459 + BACOVA_00847 0.52 +0.2
106,460 - BACOVA_00847 0.52 -0.6
106,503 + BACOVA_00847 0.56 -0.5
106,504 - BACOVA_00847 0.56 -0.9
106,506 + BACOVA_00847 0.56 -0.7
106,507 - BACOVA_00847 0.56 -0.0
106,511 - BACOVA_00847 0.57 -1.0
106,538 - BACOVA_00847 0.59 -1.3
106,552 - BACOVA_00847 0.61 +1.4
106,620 - BACOVA_00847 0.67 +1.2
106,668 - BACOVA_00847 0.71 +0.1
106,688 - BACOVA_00847 0.73 +0.7
106,692 + BACOVA_00847 0.73 -0.2
106,693 - BACOVA_00847 0.74 +0.4
106,693 - BACOVA_00847 0.74 +0.7
106,693 - BACOVA_00847 0.74 -2.6
106,693 - BACOVA_00847 0.74 -0.6
106,695 - BACOVA_00847 0.74 -1.2
106,697 - BACOVA_00847 0.74 -1.4
106,701 + BACOVA_00847 0.74 -0.0
106,702 - BACOVA_00847 0.74 -0.8
106,702 - BACOVA_00847 0.74 -1.6
106,711 - BACOVA_00847 0.75 -1.7
106,749 + BACOVA_00847 0.79 -0.5
106,778 + BACOVA_00847 0.81 +1.4
106,779 - BACOVA_00847 0.81 +2.6
106,779 - BACOVA_00847 0.81 -0.0
106,835 + BACOVA_00847 0.87 +0.4
106,843 - BACOVA_00847 0.87 +1.4
106,843 - BACOVA_00847 0.87 +0.4
106,849 + BACOVA_00847 0.88 +1.2
106,850 - BACOVA_00847 0.88 -1.5
106,853 - BACOVA_00847 0.88 +0.8
106,859 - BACOVA_00847 0.89 -0.7
106,861 - BACOVA_00847 0.89 -1.4
106,861 - BACOVA_00847 0.89 -0.3
106,861 - BACOVA_00847 0.89 -0.6
106,883 + -1.1
106,884 - +1.5
106,900 + +0.9
106,910 - -0.6
106,929 - +0.2
106,929 - +0.0
106,986 + -1.6
106,991 + -0.9
106,993 + +0.5
107,001 - -0.1
107,008 - +1.1
107,008 - +0.5
107,028 + -0.6
107,039 + -2.2
107,039 + +0.2
107,048 + -1.7
107,071 + +0.1
107,124 - +0.4
107,166 - +0.0
107,188 + +0.3
107,193 + +1.5
107,194 - +1.3
107,194 - +0.4
107,203 + -0.8
107,234 + -0.2
107,235 - -0.2
107,235 - +1.0
107,279 + BACOVA_00848 0.11 -0.6
107,279 + BACOVA_00848 0.11 +0.3
107,279 + BACOVA_00848 0.11 -2.7
107,279 + BACOVA_00848 0.11 -1.7
107,279 + BACOVA_00848 0.11 +0.5
107,280 - BACOVA_00848 0.12 -1.8
107,280 - BACOVA_00848 0.12 -2.2
107,307 + BACOVA_00848 0.15 -0.0
107,316 - BACOVA_00848 0.17 +1.3
107,320 + BACOVA_00848 0.17 +0.6
107,386 - BACOVA_00848 0.26 +0.0
107,425 + BACOVA_00848 0.32 -0.3
107,440 - BACOVA_00848 0.34 -0.0
107,497 + BACOVA_00848 0.42 +0.5
107,498 - BACOVA_00848 0.42 -0.8
107,515 + BACOVA_00848 0.45 -0.5
107,516 - BACOVA_00848 0.45 +0.7
107,521 + BACOVA_00848 0.45 +0.7
107,521 + BACOVA_00848 0.45 +0.4
107,522 - BACOVA_00848 0.46 +0.9
107,561 - BACOVA_00848 0.51 -0.1
107,564 + BACOVA_00848 0.51 +0.6
107,565 - BACOVA_00848 0.52 -0.6
107,639 + BACOVA_00848 0.62 +0.6
107,672 + BACOVA_00848 0.67 -1.2
107,722 + BACOVA_00848 0.74 -0.3
107,731 - BACOVA_00848 0.75 +1.3
107,731 - BACOVA_00848 0.75 +0.5
107,745 + BACOVA_00848 0.77 +0.6
107,792 + BACOVA_00848 0.84 -0.0
107,793 - BACOVA_00848 0.84 +0.4
107,820 + BACOVA_00848 0.87 -1.2
107,879 + +0.2
107,879 + +1.0
107,880 - -0.0
107,917 + -0.0
107,918 - +0.2
107,974 + -0.8

Or see this region's nucleotide sequence