Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00843 and BACOVA_00844 overlap by 13 nucleotides BACOVA_00844 and BACOVA_00845 overlap by 20 nucleotides BACOVA_00845 and BACOVA_00846 are separated by 269 nucleotides BACOVA_00846 and BACOVA_00847 are separated by 531 nucleotides
BACOVA_00843: BACOVA_00843 - hypothetical protein, at 100,433 to 102,145
_00843
BACOVA_00844: BACOVA_00844 - hypothetical protein, at 102,133 to 102,246
_00844
BACOVA_00845: BACOVA_00845 - putative DNA-binding protein, at 102,227 to 102,844
_00845
BACOVA_00846: BACOVA_00846 - hypothetical protein, at 103,114 to 105,360
_00846
BACOVA_00847: BACOVA_00847 - putative ribosome small subunit-dependent GTPase A, at 105,892 to 106,980
_00847
Position (kb) 103
104
105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 102.134 kb on + strand at 102.136 kb on + strand at 102.136 kb on + strand at 102.136 kb on + strand at 102.136 kb on + strand at 102.137 kb on - strand at 102.137 kb on - strand at 102.137 kb on - strand at 102.151 kb on + strand, within BACOVA_00844 at 102.152 kb on - strand, within BACOVA_00844 at 102.163 kb on + strand, within BACOVA_00844 at 102.225 kb on + strand, within BACOVA_00844 at 102.225 kb on + strand, within BACOVA_00844 at 102.226 kb on - strand, within BACOVA_00844 at 102.228 kb on + strand at 102.228 kb on + strand at 102.228 kb on + strand at 102.229 kb on - strand at 102.229 kb on - strand at 102.229 kb on - strand at 102.247 kb on - strand at 102.302 kb on - strand, within BACOVA_00845 at 102.346 kb on + strand, within BACOVA_00845 at 102.347 kb on - strand, within BACOVA_00845 at 102.349 kb on + strand, within BACOVA_00845 at 102.352 kb on - strand, within BACOVA_00845 at 102.352 kb on - strand, within BACOVA_00845 at 102.352 kb on - strand, within BACOVA_00845 at 102.368 kb on - strand, within BACOVA_00845 at 102.395 kb on + strand, within BACOVA_00845 at 102.473 kb on + strand, within BACOVA_00845 at 102.474 kb on - strand, within BACOVA_00845 at 102.570 kb on - strand, within BACOVA_00845 at 102.581 kb on - strand, within BACOVA_00845 at 102.598 kb on + strand, within BACOVA_00845 at 102.629 kb on - strand, within BACOVA_00845 at 102.665 kb on + strand, within BACOVA_00845 at 102.666 kb on - strand, within BACOVA_00845 at 102.696 kb on + strand, within BACOVA_00845 at 102.823 kb on - strand at 102.823 kb on - strand at 102.844 kb on + strand at 102.845 kb on - strand at 102.845 kb on - strand at 102.849 kb on - strand at 102.850 kb on + strand at 102.851 kb on - strand at 102.861 kb on + strand at 102.861 kb on + strand at 102.862 kb on - strand at 102.874 kb on + strand at 102.875 kb on - strand at 102.875 kb on - strand at 102.887 kb on - strand at 102.893 kb on - strand at 102.896 kb on + strand at 103.033 kb on - strand at 103.033 kb on - strand at 103.045 kb on - strand at 103.054 kb on + strand at 103.060 kb on + strand at 103.130 kb on - strand at 103.134 kb on + strand at 103.135 kb on - strand at 103.170 kb on + strand at 103.171 kb on - strand at 103.171 kb on - strand at 103.172 kb on + strand at 103.172 kb on + strand at 103.172 kb on + strand at 103.172 kb on + strand at 103.173 kb on - strand at 103.174 kb on + strand at 103.174 kb on + strand at 103.175 kb on - strand at 103.175 kb on - strand at 103.194 kb on + strand at 103.235 kb on - strand at 103.278 kb on - strand at 103.297 kb on - strand at 103.407 kb on + strand, within BACOVA_00846 at 103.408 kb on - strand, within BACOVA_00846 at 103.411 kb on + strand, within BACOVA_00846 at 103.412 kb on - strand, within BACOVA_00846 at 103.440 kb on - strand, within BACOVA_00846 at 103.444 kb on + strand, within BACOVA_00846 at 103.444 kb on + strand, within BACOVA_00846 at 103.445 kb on - strand, within BACOVA_00846 at 103.475 kb on + strand, within BACOVA_00846 at 103.506 kb on + strand, within BACOVA_00846 at 103.516 kb on - strand, within BACOVA_00846 at 103.527 kb on + strand, within BACOVA_00846 at 103.530 kb on - strand, within BACOVA_00846 at 103.553 kb on + strand, within BACOVA_00846 at 103.554 kb on - strand, within BACOVA_00846 at 103.596 kb on + strand, within BACOVA_00846 at 103.609 kb on - strand, within BACOVA_00846 at 103.659 kb on - strand, within BACOVA_00846 at 103.767 kb on + strand, within BACOVA_00846 at 103.767 kb on + strand, within BACOVA_00846 at 103.767 kb on + strand, within BACOVA_00846 at 103.881 kb on + strand, within BACOVA_00846 at 103.882 kb on - strand, within BACOVA_00846 at 103.890 kb on + strand, within BACOVA_00846 at 103.891 kb on - strand, within BACOVA_00846 at 103.892 kb on + strand, within BACOVA_00846 at 103.896 kb on + strand, within BACOVA_00846 at 103.896 kb on + strand, within BACOVA_00846 at 103.897 kb on - strand, within BACOVA_00846 at 104.003 kb on + strand, within BACOVA_00846 at 104.004 kb on - strand, within BACOVA_00846 at 104.004 kb on - strand, within BACOVA_00846 at 104.004 kb on - strand, within BACOVA_00846 at 104.018 kb on + strand, within BACOVA_00846 at 104.019 kb on - strand, within BACOVA_00846 at 104.029 kb on + strand, within BACOVA_00846 at 104.029 kb on + strand, within BACOVA_00846 at 104.071 kb on - strand, within BACOVA_00846 at 104.088 kb on - strand, within BACOVA_00846 at 104.099 kb on + strand, within BACOVA_00846 at 104.103 kb on + strand, within BACOVA_00846 at 104.112 kb on + strand, within BACOVA_00846 at 104.117 kb on - strand, within BACOVA_00846 at 104.151 kb on + strand, within BACOVA_00846 at 104.200 kb on + strand, within BACOVA_00846 at 104.233 kb on + strand, within BACOVA_00846 at 104.302 kb on - strand, within BACOVA_00846 at 104.303 kb on + strand, within BACOVA_00846 at 104.303 kb on + strand, within BACOVA_00846 at 104.320 kb on + strand, within BACOVA_00846 at 104.320 kb on + strand, within BACOVA_00846 at 104.320 kb on + strand, within BACOVA_00846 at 104.320 kb on + strand, within BACOVA_00846 at 104.321 kb on - strand, within BACOVA_00846 at 104.321 kb on - strand, within BACOVA_00846 at 104.321 kb on - strand, within BACOVA_00846 at 104.321 kb on - strand, within BACOVA_00846 at 104.322 kb on + strand, within BACOVA_00846 at 104.322 kb on + strand, within BACOVA_00846 at 104.366 kb on + strand, within BACOVA_00846 at 104.390 kb on - strand, within BACOVA_00846 at 104.394 kb on + strand, within BACOVA_00846 at 104.394 kb on + strand, within BACOVA_00846 at 104.398 kb on + strand, within BACOVA_00846 at 104.500 kb on - strand, within BACOVA_00846 at 104.500 kb on - strand, within BACOVA_00846 at 104.501 kb on + strand, within BACOVA_00846 at 104.566 kb on + strand, within BACOVA_00846 at 104.568 kb on + strand, within BACOVA_00846 at 104.568 kb on + strand, within BACOVA_00846 at 104.568 kb on + strand, within BACOVA_00846 at 104.568 kb on + strand, within BACOVA_00846 at 104.568 kb on + strand, within BACOVA_00846 at 104.568 kb on + strand, within BACOVA_00846 at 104.569 kb on - strand, within BACOVA_00846 at 104.569 kb on - strand, within BACOVA_00846 at 104.569 kb on - strand, within BACOVA_00846 at 104.569 kb on - strand, within BACOVA_00846 at 104.601 kb on + strand, within BACOVA_00846 at 104.601 kb on + strand, within BACOVA_00846 at 104.602 kb on - strand, within BACOVA_00846 at 104.602 kb on - strand, within BACOVA_00846 at 104.608 kb on - strand, within BACOVA_00846 at 104.608 kb on - strand, within BACOVA_00846 at 104.642 kb on + strand, within BACOVA_00846 at 104.659 kb on + strand, within BACOVA_00846 at 104.659 kb on + strand, within BACOVA_00846 at 104.659 kb on + strand, within BACOVA_00846 at 104.662 kb on - strand, within BACOVA_00846 at 104.662 kb on - strand, within BACOVA_00846 at 104.721 kb on + strand, within BACOVA_00846 at 104.721 kb on + strand, within BACOVA_00846 at 104.722 kb on - strand, within BACOVA_00846 at 104.722 kb on - strand, within BACOVA_00846 at 104.722 kb on - strand, within BACOVA_00846 at 104.722 kb on - strand, within BACOVA_00846 at 104.791 kb on + strand, within BACOVA_00846 at 104.791 kb on + strand, within BACOVA_00846 at 104.830 kb on - strand, within BACOVA_00846 at 104.902 kb on - strand, within BACOVA_00846 at 104.919 kb on - strand, within BACOVA_00846 at 104.925 kb on + strand, within BACOVA_00846 at 104.970 kb on - strand, within BACOVA_00846 at 104.970 kb on - strand, within BACOVA_00846 at 104.970 kb on - strand, within BACOVA_00846 at 105.017 kb on - strand, within BACOVA_00846 at 105.060 kb on + strand, within BACOVA_00846 at 105.094 kb on + strand, within BACOVA_00846 at 105.094 kb on + strand, within BACOVA_00846 at 105.094 kb on + strand, within BACOVA_00846 at 105.094 kb on + strand, within BACOVA_00846 at 105.095 kb on - strand, within BACOVA_00846 at 105.095 kb on - strand, within BACOVA_00846 at 105.095 kb on - strand, within BACOVA_00846 at 105.225 kb on + strand at 105.225 kb on + strand at 105.225 kb on + strand at 105.225 kb on + strand at 105.226 kb on - strand at 105.226 kb on - strand at 105.226 kb on - strand at 105.226 kb on - strand at 105.250 kb on + strand at 105.264 kb on + strand at 105.314 kb on + strand at 105.447 kb on - strand at 105.553 kb on + strand at 105.559 kb on + strand at 105.560 kb on - strand at 105.561 kb on + strand at 105.561 kb on + strand at 105.561 kb on + strand at 105.562 kb on - strand at 105.618 kb on + strand at 105.626 kb on - strand at 105.663 kb on + strand at 105.663 kb on + strand at 105.664 kb on - strand at 105.664 kb on - strand at 105.673 kb on + strand at 105.697 kb on - strand at 105.722 kb on - strand at 105.732 kb on - strand at 105.746 kb on + strand at 105.747 kb on - strand at 105.747 kb on - strand at 105.755 kb on - strand at 105.795 kb on + strand at 105.795 kb on + strand at 105.869 kb on - strand at 105.882 kb on + strand at 105.906 kb on + strand at 105.916 kb on + strand at 105.925 kb on + strand at 106.026 kb on + strand, within BACOVA_00847 at 106.026 kb on + strand, within BACOVA_00847 at 106.028 kb on + strand, within BACOVA_00847 at 106.136 kb on - strand, within BACOVA_00847 at 106.201 kb on + strand, within BACOVA_00847 at 106.249 kb on - strand, within BACOVA_00847 at 106.249 kb on - strand, within BACOVA_00847 at 106.277 kb on - strand, within BACOVA_00847 at 106.277 kb on - strand, within BACOVA_00847 at 106.277 kb on - strand, within BACOVA_00847 at 106.277 kb on - strand, within BACOVA_00847 at 106.298 kb on + strand, within BACOVA_00847 at 106.319 kb on - strand, within BACOVA_00847
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 102,134 + +2.1 102,136 + -0.7 102,136 + -0.4 102,136 + -2.1 102,136 + -1.7 102,137 - -0.8 102,137 - -0.2 102,137 - -0.8 102,151 + BACOVA_00844 0.16 +0.8 102,152 - BACOVA_00844 0.17 +1.6 102,163 + BACOVA_00844 0.26 -0.7 102,225 + BACOVA_00844 0.81 +2.2 102,225 + BACOVA_00844 0.81 -0.8 102,226 - BACOVA_00844 0.82 -0.7 102,228 + +0.5 102,228 + +0.2 102,228 + +0.2 102,229 - +0.2 102,229 - -0.9 102,229 - +0.4 102,247 - +0.9 102,302 - BACOVA_00845 0.12 +0.5 102,346 + BACOVA_00845 0.19 -1.3 102,347 - BACOVA_00845 0.19 -1.4 102,349 + BACOVA_00845 0.20 +1.1 102,352 - BACOVA_00845 0.20 -0.3 102,352 - BACOVA_00845 0.20 +0.6 102,352 - BACOVA_00845 0.20 -3.4 102,368 - BACOVA_00845 0.23 -0.3 102,395 + BACOVA_00845 0.27 +0.6 102,473 + BACOVA_00845 0.40 +0.0 102,474 - BACOVA_00845 0.40 +0.6 102,570 - BACOVA_00845 0.56 -1.1 102,581 - BACOVA_00845 0.57 -2.6 102,598 + BACOVA_00845 0.60 -1.5 102,629 - BACOVA_00845 0.65 -1.4 102,665 + BACOVA_00845 0.71 +0.3 102,666 - BACOVA_00845 0.71 -0.2 102,696 + BACOVA_00845 0.76 -0.3 102,823 - -0.4 102,823 - -1.0 102,844 + -0.9 102,845 - -0.1 102,845 - -1.2 102,849 - +1.6 102,850 + +0.4 102,851 - +1.8 102,861 + -0.8 102,861 + +1.4 102,862 - +0.3 102,874 + -2.3 102,875 - +1.5 102,875 - +2.0 102,887 - -0.0 102,893 - +2.3 102,896 + -1.8 103,033 - -0.1 103,033 - +0.7 103,045 - -1.0 103,054 + +1.4 103,060 + +1.2 103,130 - +2.0 103,134 + -0.9 103,135 - -0.6 103,170 + +0.7 103,171 - -1.2 103,171 - -0.4 103,172 + +1.0 103,172 + +2.8 103,172 + -0.4 103,172 + -0.0 103,173 - -1.0 103,174 + -0.6 103,174 + +0.6 103,175 - -2.4 103,175 - -0.5 103,194 + +0.4 103,235 - +0.4 103,278 - +0.4 103,297 - +0.3 103,407 + BACOVA_00846 0.13 -0.3 103,408 - BACOVA_00846 0.13 +0.1 103,411 + BACOVA_00846 0.13 -0.8 103,412 - BACOVA_00846 0.13 -0.4 103,440 - BACOVA_00846 0.15 +1.2 103,444 + BACOVA_00846 0.15 -1.1 103,444 + BACOVA_00846 0.15 -0.6 103,445 - BACOVA_00846 0.15 -1.1 103,475 + BACOVA_00846 0.16 +0.4 103,506 + BACOVA_00846 0.17 -1.2 103,516 - BACOVA_00846 0.18 +0.0 103,527 + BACOVA_00846 0.18 +0.6 103,530 - BACOVA_00846 0.19 +0.5 103,553 + BACOVA_00846 0.20 -1.4 103,554 - BACOVA_00846 0.20 +1.6 103,596 + BACOVA_00846 0.21 -1.1 103,609 - BACOVA_00846 0.22 -1.2 103,659 - BACOVA_00846 0.24 +1.7 103,767 + BACOVA_00846 0.29 +2.1 103,767 + BACOVA_00846 0.29 -0.8 103,767 + BACOVA_00846 0.29 -0.0 103,881 + BACOVA_00846 0.34 +0.2 103,882 - BACOVA_00846 0.34 -0.2 103,890 + BACOVA_00846 0.35 +1.5 103,891 - BACOVA_00846 0.35 -0.4 103,892 + BACOVA_00846 0.35 -1.6 103,896 + BACOVA_00846 0.35 +0.6 103,896 + BACOVA_00846 0.35 +0.1 103,897 - BACOVA_00846 0.35 -1.6 104,003 + BACOVA_00846 0.40 -0.6 104,004 - BACOVA_00846 0.40 +0.5 104,004 - BACOVA_00846 0.40 -0.5 104,004 - BACOVA_00846 0.40 +1.2 104,018 + BACOVA_00846 0.40 +0.2 104,019 - BACOVA_00846 0.40 -0.1 104,029 + BACOVA_00846 0.41 -0.4 104,029 + BACOVA_00846 0.41 -0.6 104,071 - BACOVA_00846 0.43 -0.0 104,088 - BACOVA_00846 0.43 +1.4 104,099 + BACOVA_00846 0.44 +0.0 104,103 + BACOVA_00846 0.44 -0.2 104,112 + BACOVA_00846 0.44 -0.0 104,117 - BACOVA_00846 0.45 -0.1 104,151 + BACOVA_00846 0.46 -0.0 104,200 + BACOVA_00846 0.48 +0.6 104,233 + BACOVA_00846 0.50 -1.3 104,302 - BACOVA_00846 0.53 -1.3 104,303 + BACOVA_00846 0.53 +0.3 104,303 + BACOVA_00846 0.53 +0.1 104,320 + BACOVA_00846 0.54 +3.0 104,320 + BACOVA_00846 0.54 -1.4 104,320 + BACOVA_00846 0.54 -0.1 104,320 + BACOVA_00846 0.54 +0.8 104,321 - BACOVA_00846 0.54 +1.8 104,321 - BACOVA_00846 0.54 -1.1 104,321 - BACOVA_00846 0.54 +0.6 104,321 - BACOVA_00846 0.54 -0.1 104,322 + BACOVA_00846 0.54 +1.4 104,322 + BACOVA_00846 0.54 +0.6 104,366 + BACOVA_00846 0.56 -0.6 104,390 - BACOVA_00846 0.57 +0.1 104,394 + BACOVA_00846 0.57 +0.5 104,394 + BACOVA_00846 0.57 -0.4 104,398 + BACOVA_00846 0.57 +0.2 104,500 - BACOVA_00846 0.62 +0.3 104,500 - BACOVA_00846 0.62 -0.9 104,501 + BACOVA_00846 0.62 +0.9 104,566 + BACOVA_00846 0.65 +0.6 104,568 + BACOVA_00846 0.65 +0.1 104,568 + BACOVA_00846 0.65 +0.3 104,568 + BACOVA_00846 0.65 -1.5 104,568 + BACOVA_00846 0.65 -0.6 104,568 + BACOVA_00846 0.65 -0.5 104,568 + BACOVA_00846 0.65 -0.6 104,569 - BACOVA_00846 0.65 -1.0 104,569 - BACOVA_00846 0.65 -1.7 104,569 - BACOVA_00846 0.65 -0.4 104,569 - BACOVA_00846 0.65 -0.0 104,601 + BACOVA_00846 0.66 -0.7 104,601 + BACOVA_00846 0.66 -0.6 104,602 - BACOVA_00846 0.66 +0.7 104,602 - BACOVA_00846 0.66 +0.1 104,608 - BACOVA_00846 0.66 +0.2 104,608 - BACOVA_00846 0.66 -0.4 104,642 + BACOVA_00846 0.68 -0.2 104,659 + BACOVA_00846 0.69 +1.2 104,659 + BACOVA_00846 0.69 -0.0 104,659 + BACOVA_00846 0.69 +0.4 104,662 - BACOVA_00846 0.69 -1.4 104,662 - BACOVA_00846 0.69 +0.4 104,721 + BACOVA_00846 0.72 +0.6 104,721 + BACOVA_00846 0.72 +0.8 104,722 - BACOVA_00846 0.72 -0.5 104,722 - BACOVA_00846 0.72 -0.1 104,722 - BACOVA_00846 0.72 -0.1 104,722 - BACOVA_00846 0.72 -0.6 104,791 + BACOVA_00846 0.75 -0.1 104,791 + BACOVA_00846 0.75 +2.8 104,830 - BACOVA_00846 0.76 +0.4 104,902 - BACOVA_00846 0.80 +0.1 104,919 - BACOVA_00846 0.80 +1.6 104,925 + BACOVA_00846 0.81 -1.4 104,970 - BACOVA_00846 0.83 +1.2 104,970 - BACOVA_00846 0.83 -0.0 104,970 - BACOVA_00846 0.83 -0.8 105,017 - BACOVA_00846 0.85 -0.0 105,060 + BACOVA_00846 0.87 +0.3 105,094 + BACOVA_00846 0.88 -0.3 105,094 + BACOVA_00846 0.88 +0.1 105,094 + BACOVA_00846 0.88 -1.0 105,094 + BACOVA_00846 0.88 -2.0 105,095 - BACOVA_00846 0.88 -0.4 105,095 - BACOVA_00846 0.88 -1.0 105,095 - BACOVA_00846 0.88 -0.2 105,225 + -0.5 105,225 + -0.3 105,225 + -0.6 105,225 + +1.0 105,226 - -0.7 105,226 - -1.3 105,226 - -1.8 105,226 - +0.2 105,250 + +0.4 105,264 + +0.4 105,314 + +0.9 105,447 - -1.0 105,553 + -0.4 105,559 + +2.0 105,560 - +3.3 105,561 + -0.9 105,561 + -1.5 105,561 + -0.1 105,562 - +0.0 105,618 + -0.8 105,626 - -1.0 105,663 + -0.0 105,663 + +1.1 105,664 - +0.6 105,664 - +0.1 105,673 + -0.2 105,697 - -0.6 105,722 - +0.6 105,732 - +0.1 105,746 + -0.3 105,747 - -2.4 105,747 - +1.1 105,755 - +0.5 105,795 + +1.5 105,795 + -1.0 105,869 - +0.2 105,882 + -0.9 105,906 + +0.9 105,916 + +0.9 105,925 + +0.1 106,026 + BACOVA_00847 0.12 -0.4 106,026 + BACOVA_00847 0.12 +1.5 106,028 + BACOVA_00847 0.12 +1.6 106,136 - BACOVA_00847 0.22 -0.2 106,201 + BACOVA_00847 0.28 +0.4 106,249 - BACOVA_00847 0.33 -0.4 106,249 - BACOVA_00847 0.33 +1.3 106,277 - BACOVA_00847 0.35 -0.5 106,277 - BACOVA_00847 0.35 +1.4 106,277 - BACOVA_00847 0.35 +0.4 106,277 - BACOVA_00847 0.35 -1.0 106,298 + BACOVA_00847 0.37 +0.2 106,319 - BACOVA_00847 0.39 +0.5
Or see this region's nucleotide sequence