Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00672 and BACOVA_00673 are separated by 39 nucleotides BACOVA_00673 and BACOVA_00674 are separated by 87 nucleotides BACOVA_00674 and BACOVA_00675 are separated by 157 nucleotides
BACOVA_00672: BACOVA_00672 - hypothetical protein, at 33,156 to 33,959
_00672
BACOVA_00673: BACOVA_00673 - hypothetical protein, at 33,999 to 34,157
_00673
BACOVA_00674: BACOVA_00674 - outer membrane efflux protein, at 34,245 to 35,429
_00674
BACOVA_00675: BACOVA_00675 - heavy metal efflux pump, CzcA family, at 35,587 to 38,685
_00675
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 33.256 kb on + strand, within BACOVA_00672 at 33.256 kb on + strand, within BACOVA_00672 at 33.257 kb on - strand, within BACOVA_00672 at 33.350 kb on - strand, within BACOVA_00672 at 33.364 kb on - strand, within BACOVA_00672 at 33.366 kb on + strand, within BACOVA_00672 at 33.367 kb on - strand, within BACOVA_00672 at 33.399 kb on - strand, within BACOVA_00672 at 33.420 kb on + strand, within BACOVA_00672 at 33.420 kb on + strand, within BACOVA_00672 at 33.604 kb on - strand, within BACOVA_00672 at 33.604 kb on - strand, within BACOVA_00672 at 33.616 kb on + strand, within BACOVA_00672 at 33.616 kb on + strand, within BACOVA_00672 at 33.617 kb on - strand, within BACOVA_00672 at 33.617 kb on - strand, within BACOVA_00672 at 33.624 kb on + strand, within BACOVA_00672 at 33.647 kb on + strand, within BACOVA_00672 at 33.667 kb on - strand, within BACOVA_00672 at 33.709 kb on + strand, within BACOVA_00672 at 33.710 kb on - strand, within BACOVA_00672 at 33.740 kb on - strand, within BACOVA_00672 at 33.740 kb on - strand, within BACOVA_00672 at 33.746 kb on + strand, within BACOVA_00672 at 33.747 kb on - strand, within BACOVA_00672 at 33.760 kb on - strand, within BACOVA_00672 at 33.823 kb on + strand, within BACOVA_00672 at 33.824 kb on - strand, within BACOVA_00672 at 33.824 kb on - strand, within BACOVA_00672 at 33.853 kb on + strand, within BACOVA_00672 at 33.873 kb on + strand, within BACOVA_00672 at 33.874 kb on - strand, within BACOVA_00672 at 33.933 kb on + strand at 33.933 kb on + strand at 33.934 kb on - strand at 33.941 kb on + strand at 33.954 kb on + strand at 33.963 kb on + strand at 33.986 kb on + strand at 33.987 kb on - strand at 34.015 kb on + strand, within BACOVA_00673 at 34.016 kb on - strand, within BACOVA_00673 at 34.020 kb on + strand, within BACOVA_00673 at 34.021 kb on - strand, within BACOVA_00673 at 34.033 kb on + strand, within BACOVA_00673 at 34.069 kb on + strand, within BACOVA_00673 at 34.070 kb on - strand, within BACOVA_00673 at 34.070 kb on - strand, within BACOVA_00673 at 34.107 kb on + strand, within BACOVA_00673 at 34.108 kb on - strand, within BACOVA_00673 at 34.109 kb on + strand, within BACOVA_00673 at 34.109 kb on + strand, within BACOVA_00673 at 34.110 kb on - strand, within BACOVA_00673 at 34.114 kb on - strand, within BACOVA_00673 at 34.114 kb on - strand, within BACOVA_00673 at 34.122 kb on - strand, within BACOVA_00673 at 34.122 kb on - strand, within BACOVA_00673 at 34.124 kb on + strand, within BACOVA_00673 at 34.125 kb on - strand, within BACOVA_00673 at 34.125 kb on - strand, within BACOVA_00673 at 34.160 kb on + strand at 34.161 kb on - strand at 34.167 kb on + strand at 34.167 kb on + strand at 34.168 kb on - strand at 34.168 kb on - strand at 34.168 kb on - strand at 34.168 kb on - strand at 34.171 kb on + strand at 34.177 kb on + strand at 34.177 kb on + strand at 34.177 kb on + strand at 34.178 kb on - strand at 34.179 kb on + strand at 34.181 kb on + strand at 34.193 kb on - strand at 34.199 kb on + strand at 34.200 kb on - strand at 34.224 kb on + strand at 34.224 kb on + strand at 34.225 kb on - strand at 34.235 kb on + strand at 34.235 kb on + strand at 34.235 kb on + strand at 34.239 kb on + strand at 34.240 kb on - strand at 34.242 kb on + strand at 34.243 kb on - strand at 34.243 kb on - strand at 34.246 kb on + strand at 34.247 kb on - strand at 34.249 kb on - strand at 34.249 kb on - strand at 34.249 kb on - strand at 34.286 kb on - strand at 34.335 kb on + strand at 34.348 kb on + strand at 34.428 kb on - strand, within BACOVA_00674 at 34.428 kb on - strand, within BACOVA_00674 at 34.430 kb on - strand, within BACOVA_00674 at 34.508 kb on + strand, within BACOVA_00674 at 34.599 kb on + strand, within BACOVA_00674 at 34.674 kb on - strand, within BACOVA_00674 at 34.716 kb on + strand, within BACOVA_00674 at 34.787 kb on + strand, within BACOVA_00674 at 34.976 kb on + strand, within BACOVA_00674 at 35.067 kb on + strand, within BACOVA_00674 at 35.139 kb on - strand, within BACOVA_00674 at 35.207 kb on + strand, within BACOVA_00674 at 35.224 kb on - strand, within BACOVA_00674 at 35.224 kb on - strand, within BACOVA_00674 at 35.224 kb on - strand, within BACOVA_00674 at 35.292 kb on - strand, within BACOVA_00674 at 35.321 kb on + strand at 35.322 kb on - strand at 35.335 kb on - strand at 35.347 kb on - strand at 35.382 kb on + strand at 35.383 kb on - strand at 35.388 kb on + strand at 35.443 kb on - strand at 35.449 kb on + strand at 35.450 kb on - strand at 35.465 kb on + strand at 35.469 kb on + strand at 35.470 kb on - strand at 35.474 kb on + strand at 35.488 kb on + strand at 35.672 kb on - strand at 35.779 kb on + strand at 35.821 kb on - strand at 35.825 kb on + strand at 35.825 kb on + strand at 35.825 kb on + strand at 35.827 kb on + strand at 35.827 kb on + strand at 35.861 kb on + strand at 35.875 kb on + strand at 35.876 kb on - strand at 35.881 kb on - strand at 35.952 kb on + strand, within BACOVA_00675 at 35.969 kb on - strand, within BACOVA_00675 at 36.042 kb on - strand, within BACOVA_00675 at 36.042 kb on - strand, within BACOVA_00675 at 36.073 kb on - strand, within BACOVA_00675 at 36.131 kb on + strand, within BACOVA_00675 at 36.143 kb on + strand, within BACOVA_00675 at 36.161 kb on - strand, within BACOVA_00675 at 36.175 kb on - strand, within BACOVA_00675 at 36.244 kb on - strand, within BACOVA_00675 at 36.340 kb on + strand, within BACOVA_00675 at 36.426 kb on - strand, within BACOVA_00675
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 33,256 + BACOVA_00672 0.12 -0.3 33,256 + BACOVA_00672 0.12 -0.3 33,257 - BACOVA_00672 0.13 -0.1 33,350 - BACOVA_00672 0.24 +0.3 33,364 - BACOVA_00672 0.26 -1.6 33,366 + BACOVA_00672 0.26 -0.1 33,367 - BACOVA_00672 0.26 +0.9 33,399 - BACOVA_00672 0.30 +0.0 33,420 + BACOVA_00672 0.33 -0.5 33,420 + BACOVA_00672 0.33 -2.1 33,604 - BACOVA_00672 0.56 -1.4 33,604 - BACOVA_00672 0.56 +0.6 33,616 + BACOVA_00672 0.57 +0.3 33,616 + BACOVA_00672 0.57 +0.3 33,617 - BACOVA_00672 0.57 -0.1 33,617 - BACOVA_00672 0.57 -1.9 33,624 + BACOVA_00672 0.58 -0.4 33,647 + BACOVA_00672 0.61 +0.3 33,667 - BACOVA_00672 0.64 +0.5 33,709 + BACOVA_00672 0.69 -2.0 33,710 - BACOVA_00672 0.69 -0.1 33,740 - BACOVA_00672 0.73 -0.5 33,740 - BACOVA_00672 0.73 +0.5 33,746 + BACOVA_00672 0.73 -0.0 33,747 - BACOVA_00672 0.74 -0.4 33,760 - BACOVA_00672 0.75 -1.1 33,823 + BACOVA_00672 0.83 -0.3 33,824 - BACOVA_00672 0.83 +0.4 33,824 - BACOVA_00672 0.83 +0.3 33,853 + BACOVA_00672 0.87 -0.4 33,873 + BACOVA_00672 0.89 -1.6 33,874 - BACOVA_00672 0.89 -1.0 33,933 + -0.2 33,933 + -0.2 33,934 - -0.7 33,941 + +0.7 33,954 + -0.6 33,963 + +0.3 33,986 + -0.0 33,987 - -1.0 34,015 + BACOVA_00673 0.10 -1.7 34,016 - BACOVA_00673 0.11 +0.1 34,020 + BACOVA_00673 0.13 +0.1 34,021 - BACOVA_00673 0.14 -0.9 34,033 + BACOVA_00673 0.21 +0.2 34,069 + BACOVA_00673 0.44 -1.2 34,070 - BACOVA_00673 0.45 -0.8 34,070 - BACOVA_00673 0.45 +0.1 34,107 + BACOVA_00673 0.68 -0.9 34,108 - BACOVA_00673 0.69 -0.9 34,109 + BACOVA_00673 0.69 -2.4 34,109 + BACOVA_00673 0.69 +0.0 34,110 - BACOVA_00673 0.70 +1.6 34,114 - BACOVA_00673 0.72 -1.1 34,114 - BACOVA_00673 0.72 -0.1 34,122 - BACOVA_00673 0.77 -1.9 34,122 - BACOVA_00673 0.77 -1.6 34,124 + BACOVA_00673 0.79 +0.8 34,125 - BACOVA_00673 0.79 -1.7 34,125 - BACOVA_00673 0.79 +1.4 34,160 + -0.6 34,161 - -0.1 34,167 + +0.8 34,167 + -1.8 34,168 - -0.4 34,168 - -0.0 34,168 - -0.9 34,168 - -1.4 34,171 + -0.3 34,177 + +0.7 34,177 + +0.5 34,177 + -1.4 34,178 - +0.7 34,179 + -1.2 34,181 + -0.3 34,193 - -2.1 34,199 + -0.2 34,200 - +1.3 34,224 + -0.1 34,224 + -0.2 34,225 - +0.4 34,235 + +1.2 34,235 + +0.5 34,235 + +1.3 34,239 + +1.2 34,240 - +0.4 34,242 + +0.4 34,243 - -1.9 34,243 - -0.7 34,246 + -2.4 34,247 - -0.3 34,249 - -1.3 34,249 - -1.0 34,249 - -1.3 34,286 - -1.2 34,335 + -0.4 34,348 + +0.4 34,428 - BACOVA_00674 0.15 -0.5 34,428 - BACOVA_00674 0.15 -0.1 34,430 - BACOVA_00674 0.16 +0.7 34,508 + BACOVA_00674 0.22 -2.3 34,599 + BACOVA_00674 0.30 -2.2 34,674 - BACOVA_00674 0.36 -0.7 34,716 + BACOVA_00674 0.40 -2.9 34,787 + BACOVA_00674 0.46 -1.2 34,976 + BACOVA_00674 0.62 -3.6 35,067 + BACOVA_00674 0.69 +0.2 35,139 - BACOVA_00674 0.75 -0.7 35,207 + BACOVA_00674 0.81 +0.6 35,224 - BACOVA_00674 0.83 -0.5 35,224 - BACOVA_00674 0.83 -3.6 35,224 - BACOVA_00674 0.83 -0.6 35,292 - BACOVA_00674 0.88 -3.0 35,321 + -0.1 35,322 - -0.5 35,335 - -0.2 35,347 - +0.0 35,382 + -0.5 35,383 - +1.5 35,388 + +0.8 35,443 - -1.0 35,449 + -2.2 35,450 - -2.2 35,465 + -0.9 35,469 + -0.8 35,470 - -0.0 35,474 + -2.4 35,488 + -2.2 35,672 - -1.1 35,779 + +0.7 35,821 - -2.4 35,825 + +0.7 35,825 + +0.0 35,825 + -3.0 35,827 + +1.5 35,827 + +4.1 35,861 + +2.7 35,875 + +0.9 35,876 - -1.9 35,881 - +1.1 35,952 + BACOVA_00675 0.12 -1.1 35,969 - BACOVA_00675 0.12 -0.9 36,042 - BACOVA_00675 0.15 -1.6 36,042 - BACOVA_00675 0.15 +0.4 36,073 - BACOVA_00675 0.16 -2.2 36,131 + BACOVA_00675 0.18 -0.7 36,143 + BACOVA_00675 0.18 -0.9 36,161 - BACOVA_00675 0.19 -0.7 36,175 - BACOVA_00675 0.19 +0.3 36,244 - BACOVA_00675 0.21 +1.6 36,340 + BACOVA_00675 0.24 +0.3 36,426 - BACOVA_00675 0.27 +0.0
Or see this region's nucleotide sequence