Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00317

Experiment: Peptone 2.5 mg/mL (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00316 and BACOVA_00317 are separated by 127 nucleotidesBACOVA_00317 and BACOVA_00318 are separated by 2 nucleotides BACOVA_00316: BACOVA_00316 - hypothetical protein, at 584,586 to 585,875 _00316 BACOVA_00317: BACOVA_00317 - hypothetical protein, at 586,003 to 586,914 _00317 BACOVA_00318: BACOVA_00318 - hypothetical protein, at 586,917 to 588,680 _00318 Position (kb) 586 587Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 585.047 kb on - strand, within BACOVA_00316at 585.058 kb on - strand, within BACOVA_00316at 585.070 kb on + strand, within BACOVA_00316at 585.070 kb on + strand, within BACOVA_00316at 585.123 kb on - strand, within BACOVA_00316at 585.136 kb on - strand, within BACOVA_00316at 585.139 kb on - strand, within BACOVA_00316at 585.140 kb on + strand, within BACOVA_00316at 585.143 kb on + strand, within BACOVA_00316at 585.143 kb on + strand, within BACOVA_00316at 585.145 kb on + strand, within BACOVA_00316at 585.157 kb on - strand, within BACOVA_00316at 585.182 kb on + strand, within BACOVA_00316at 585.183 kb on - strand, within BACOVA_00316at 585.191 kb on - strand, within BACOVA_00316at 585.192 kb on + strand, within BACOVA_00316at 585.193 kb on - strand, within BACOVA_00316at 585.194 kb on + strand, within BACOVA_00316at 585.195 kb on - strand, within BACOVA_00316at 585.195 kb on - strand, within BACOVA_00316at 585.199 kb on + strand, within BACOVA_00316at 585.200 kb on - strand, within BACOVA_00316at 585.200 kb on - strand, within BACOVA_00316at 585.202 kb on + strand, within BACOVA_00316at 585.202 kb on + strand, within BACOVA_00316at 585.209 kb on + strand, within BACOVA_00316at 585.211 kb on + strand, within BACOVA_00316at 585.243 kb on - strand, within BACOVA_00316at 585.272 kb on - strand, within BACOVA_00316at 585.281 kb on + strand, within BACOVA_00316at 585.282 kb on - strand, within BACOVA_00316at 585.300 kb on + strand, within BACOVA_00316at 585.330 kb on + strand, within BACOVA_00316at 585.336 kb on + strand, within BACOVA_00316at 585.336 kb on + strand, within BACOVA_00316at 585.346 kb on + strand, within BACOVA_00316at 585.494 kb on + strand, within BACOVA_00316at 585.527 kb on + strand, within BACOVA_00316at 585.542 kb on - strand, within BACOVA_00316at 585.571 kb on + strand, within BACOVA_00316at 585.574 kb on + strand, within BACOVA_00316at 585.574 kb on + strand, within BACOVA_00316at 585.578 kb on + strand, within BACOVA_00316at 585.611 kb on - strand, within BACOVA_00316at 585.611 kb on - strand, within BACOVA_00316at 585.644 kb on + strand, within BACOVA_00316at 585.674 kb on - strand, within BACOVA_00316at 585.677 kb on - strand, within BACOVA_00316at 585.680 kb on + strand, within BACOVA_00316at 585.713 kb on + strand, within BACOVA_00316at 585.713 kb on + strand, within BACOVA_00316at 585.744 kb on - strand, within BACOVA_00316at 585.744 kb on - strand, within BACOVA_00316at 585.754 kb on - strandat 585.756 kb on + strandat 585.756 kb on + strandat 585.797 kb on + strandat 585.797 kb on + strandat 585.798 kb on - strandat 585.806 kb on - strandat 585.858 kb on - strandat 585.901 kb on - strandat 585.953 kb on + strandat 586.019 kb on - strandat 586.019 kb on - strandat 586.020 kb on + strandat 586.021 kb on - strandat 586.023 kb on + strandat 586.062 kb on + strandat 586.077 kb on + strandat 586.078 kb on - strandat 586.102 kb on - strand, within BACOVA_00317at 586.203 kb on + strand, within BACOVA_00317at 586.215 kb on + strand, within BACOVA_00317at 586.215 kb on + strand, within BACOVA_00317at 586.241 kb on + strand, within BACOVA_00317at 586.258 kb on + strand, within BACOVA_00317at 586.263 kb on - strand, within BACOVA_00317at 586.268 kb on + strand, within BACOVA_00317at 586.437 kb on - strand, within BACOVA_00317at 586.465 kb on - strand, within BACOVA_00317at 586.512 kb on + strand, within BACOVA_00317at 586.563 kb on + strand, within BACOVA_00317at 586.571 kb on - strand, within BACOVA_00317at 586.621 kb on + strand, within BACOVA_00317at 586.621 kb on + strand, within BACOVA_00317at 586.622 kb on - strand, within BACOVA_00317at 586.631 kb on - strand, within BACOVA_00317at 586.716 kb on + strand, within BACOVA_00317at 586.716 kb on + strand, within BACOVA_00317at 586.749 kb on - strand, within BACOVA_00317at 586.755 kb on + strand, within BACOVA_00317at 586.755 kb on + strand, within BACOVA_00317at 586.755 kb on + strand, within BACOVA_00317at 586.756 kb on - strand, within BACOVA_00317at 586.759 kb on - strand, within BACOVA_00317at 586.760 kb on + strand, within BACOVA_00317at 586.760 kb on + strand, within BACOVA_00317at 586.760 kb on + strand, within BACOVA_00317at 586.760 kb on + strand, within BACOVA_00317at 586.761 kb on - strand, within BACOVA_00317at 586.788 kb on + strand, within BACOVA_00317at 586.789 kb on - strand, within BACOVA_00317at 586.789 kb on - strand, within BACOVA_00317at 586.789 kb on - strand, within BACOVA_00317at 586.844 kb on - strandat 586.874 kb on + strandat 586.880 kb on - strandat 586.880 kb on - strandat 586.912 kb on + strandat 586.913 kb on - strandat 586.926 kb on + strandat 586.927 kb on - strandat 586.937 kb on - strandat 586.948 kb on + strandat 586.953 kb on - strandat 586.996 kb on + strandat 587.022 kb on - strandat 587.028 kb on + strandat 587.031 kb on - strandat 587.063 kb on + strandat 587.064 kb on - strandat 587.081 kb on + strandat 587.084 kb on - strandat 587.087 kb on + strandat 587.088 kb on - strandat 587.117 kb on + strand, within BACOVA_00318at 587.119 kb on + strand, within BACOVA_00318at 587.119 kb on + strand, within BACOVA_00318at 587.130 kb on + strand, within BACOVA_00318at 587.148 kb on - strand, within BACOVA_00318at 587.167 kb on + strand, within BACOVA_00318at 587.198 kb on - strand, within BACOVA_00318at 587.237 kb on + strand, within BACOVA_00318at 587.270 kb on - strand, within BACOVA_00318at 587.370 kb on + strand, within BACOVA_00318at 587.371 kb on - strand, within BACOVA_00318at 587.383 kb on + strand, within BACOVA_00318at 587.384 kb on - strand, within BACOVA_00318at 587.468 kb on + strand, within BACOVA_00318at 587.491 kb on - strand, within BACOVA_00318at 587.504 kb on + strand, within BACOVA_00318at 587.560 kb on - strand, within BACOVA_00318at 587.567 kb on - strand, within BACOVA_00318at 587.573 kb on + strand, within BACOVA_00318at 587.620 kb on + strand, within BACOVA_00318at 587.621 kb on - strand, within BACOVA_00318at 587.671 kb on + strand, within BACOVA_00318at 587.672 kb on - strand, within BACOVA_00318at 587.745 kb on - strand, within BACOVA_00318at 587.760 kb on - strand, within BACOVA_00318at 587.780 kb on + strand, within BACOVA_00318at 587.788 kb on + strand, within BACOVA_00318at 587.789 kb on - strand, within BACOVA_00318at 587.789 kb on - strand, within BACOVA_00318at 587.835 kb on - strand, within BACOVA_00318at 587.866 kb on - strand, within BACOVA_00318at 587.867 kb on + strand, within BACOVA_00318at 587.868 kb on - strand, within BACOVA_00318at 587.868 kb on - strand, within BACOVA_00318at 587.899 kb on + strand, within BACOVA_00318at 587.900 kb on - strand, within BACOVA_00318at 587.914 kb on - strand, within BACOVA_00318

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Per-strain Table

Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media
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585,047 - BACOVA_00316 0.36 +0.9
585,058 - BACOVA_00316 0.37 +0.6
585,070 + BACOVA_00316 0.38 +0.0
585,070 + BACOVA_00316 0.38 +0.1
585,123 - BACOVA_00316 0.42 -1.7
585,136 - BACOVA_00316 0.43 +0.4
585,139 - BACOVA_00316 0.43 +0.7
585,140 + BACOVA_00316 0.43 -1.1
585,143 + BACOVA_00316 0.43 +0.9
585,143 + BACOVA_00316 0.43 -0.8
585,145 + BACOVA_00316 0.43 +1.0
585,157 - BACOVA_00316 0.44 -0.5
585,182 + BACOVA_00316 0.46 -0.4
585,183 - BACOVA_00316 0.46 +0.9
585,191 - BACOVA_00316 0.47 -0.8
585,192 + BACOVA_00316 0.47 -0.4
585,193 - BACOVA_00316 0.47 +1.6
585,194 + BACOVA_00316 0.47 -0.5
585,195 - BACOVA_00316 0.47 -1.4
585,195 - BACOVA_00316 0.47 -0.2
585,199 + BACOVA_00316 0.48 -1.2
585,200 - BACOVA_00316 0.48 -0.3
585,200 - BACOVA_00316 0.48 -1.4
585,202 + BACOVA_00316 0.48 -0.2
585,202 + BACOVA_00316 0.48 +0.1
585,209 + BACOVA_00316 0.48 +0.9
585,211 + BACOVA_00316 0.48 +0.5
585,243 - BACOVA_00316 0.51 -3.8
585,272 - BACOVA_00316 0.53 +0.1
585,281 + BACOVA_00316 0.54 +0.7
585,282 - BACOVA_00316 0.54 -0.4
585,300 + BACOVA_00316 0.55 -0.0
585,330 + BACOVA_00316 0.58 +0.5
585,336 + BACOVA_00316 0.58 -0.3
585,336 + BACOVA_00316 0.58 +0.9
585,346 + BACOVA_00316 0.59 +0.0
585,494 + BACOVA_00316 0.70 +0.2
585,527 + BACOVA_00316 0.73 +0.3
585,542 - BACOVA_00316 0.74 -1.4
585,571 + BACOVA_00316 0.76 -3.7
585,574 + BACOVA_00316 0.77 -0.1
585,574 + BACOVA_00316 0.77 +1.0
585,578 + BACOVA_00316 0.77 -1.1
585,611 - BACOVA_00316 0.79 +1.0
585,611 - BACOVA_00316 0.79 -0.7
585,644 + BACOVA_00316 0.82 -1.8
585,674 - BACOVA_00316 0.84 +1.9
585,677 - BACOVA_00316 0.85 +0.6
585,680 + BACOVA_00316 0.85 +1.6
585,713 + BACOVA_00316 0.87 +0.1
585,713 + BACOVA_00316 0.87 -0.1
585,744 - BACOVA_00316 0.90 -0.6
585,744 - BACOVA_00316 0.90 -1.0
585,754 - +0.9
585,756 + +0.9
585,756 + -0.4
585,797 + -0.9
585,797 + -3.5
585,798 - -1.2
585,806 - +1.0
585,858 - -0.8
585,901 - +0.9
585,953 + -0.9
586,019 - +0.7
586,019 - +0.0
586,020 + +1.1
586,021 - +0.7
586,023 + -0.4
586,062 + -0.3
586,077 + +0.3
586,078 - -0.8
586,102 - BACOVA_00317 0.11 -0.3
586,203 + BACOVA_00317 0.22 +0.5
586,215 + BACOVA_00317 0.23 -0.4
586,215 + BACOVA_00317 0.23 -1.4
586,241 + BACOVA_00317 0.26 +0.6
586,258 + BACOVA_00317 0.28 -1.5
586,263 - BACOVA_00317 0.29 +0.8
586,268 + BACOVA_00317 0.29 -0.4
586,437 - BACOVA_00317 0.48 +1.6
586,465 - BACOVA_00317 0.51 +0.2
586,512 + BACOVA_00317 0.56 -1.1
586,563 + BACOVA_00317 0.61 +0.8
586,571 - BACOVA_00317 0.62 +0.0
586,621 + BACOVA_00317 0.68 -0.1
586,621 + BACOVA_00317 0.68 +0.4
586,622 - BACOVA_00317 0.68 -0.8
586,631 - BACOVA_00317 0.69 +0.6
586,716 + BACOVA_00317 0.78 +0.6
586,716 + BACOVA_00317 0.78 +0.8
586,749 - BACOVA_00317 0.82 -0.8
586,755 + BACOVA_00317 0.82 +0.3
586,755 + BACOVA_00317 0.82 -0.9
586,755 + BACOVA_00317 0.82 +1.1
586,756 - BACOVA_00317 0.83 +0.1
586,759 - BACOVA_00317 0.83 +0.2
586,760 + BACOVA_00317 0.83 +0.2
586,760 + BACOVA_00317 0.83 -0.1
586,760 + BACOVA_00317 0.83 -0.1
586,760 + BACOVA_00317 0.83 -0.1
586,761 - BACOVA_00317 0.83 +0.5
586,788 + BACOVA_00317 0.86 +1.2
586,789 - BACOVA_00317 0.86 -1.3
586,789 - BACOVA_00317 0.86 +0.1
586,789 - BACOVA_00317 0.86 -0.2
586,844 - +0.0
586,874 + +1.9
586,880 - -0.5
586,880 - +0.3
586,912 + -0.4
586,913 - -2.2
586,926 + -0.0
586,927 - -1.6
586,937 - -0.4
586,948 + +0.3
586,953 - +0.1
586,996 + -0.4
587,022 - -0.1
587,028 + +0.1
587,031 - -0.1
587,063 + +0.1
587,064 - +0.2
587,081 + -1.1
587,084 - +1.6
587,087 + +1.0
587,088 - +1.5
587,117 + BACOVA_00318 0.11 +0.6
587,119 + BACOVA_00318 0.11 -1.7
587,119 + BACOVA_00318 0.11 -0.5
587,130 + BACOVA_00318 0.12 +0.4
587,148 - BACOVA_00318 0.13 -0.9
587,167 + BACOVA_00318 0.14 -0.7
587,198 - BACOVA_00318 0.16 +0.3
587,237 + BACOVA_00318 0.18 -1.7
587,270 - BACOVA_00318 0.20 +1.6
587,370 + BACOVA_00318 0.26 -0.7
587,371 - BACOVA_00318 0.26 -0.7
587,383 + BACOVA_00318 0.26 +1.3
587,384 - BACOVA_00318 0.26 +0.2
587,468 + BACOVA_00318 0.31 +0.2
587,491 - BACOVA_00318 0.33 -0.4
587,504 + BACOVA_00318 0.33 +0.4
587,560 - BACOVA_00318 0.36 -0.7
587,567 - BACOVA_00318 0.37 +1.5
587,573 + BACOVA_00318 0.37 -0.6
587,620 + BACOVA_00318 0.40 -0.4
587,621 - BACOVA_00318 0.40 -2.4
587,671 + BACOVA_00318 0.43 +0.4
587,672 - BACOVA_00318 0.43 +1.0
587,745 - BACOVA_00318 0.47 +0.3
587,760 - BACOVA_00318 0.48 +0.8
587,780 + BACOVA_00318 0.49 -1.6
587,788 + BACOVA_00318 0.49 +1.6
587,789 - BACOVA_00318 0.49 -1.3
587,789 - BACOVA_00318 0.49 -1.4
587,835 - BACOVA_00318 0.52 +0.9
587,866 - BACOVA_00318 0.54 -0.7
587,867 + BACOVA_00318 0.54 -0.1
587,868 - BACOVA_00318 0.54 +0.0
587,868 - BACOVA_00318 0.54 +1.0
587,899 + BACOVA_00318 0.56 +1.0
587,900 - BACOVA_00318 0.56 -1.3
587,914 - BACOVA_00318 0.57 -1.0

Or see this region's nucleotide sequence