Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00141 and BACOVA_00142 are separated by 26 nucleotides BACOVA_00142 and BACOVA_00143 are separated by 121 nucleotides BACOVA_00143 and BACOVA_00144 are separated by 241 nucleotides BACOVA_00144 and BACOVA_00145 overlap by 29 nucleotides
BACOVA_00141: BACOVA_00141 - oxidoreductase, short chain dehydrogenase/reductase family protein, at 11,186 to 11,989
_00141
BACOVA_00142: BACOVA_00142 - hypothetical protein, at 12,016 to 12,126
_00142
BACOVA_00143: BACOVA_00143 - hypothetical protein, at 12,248 to 13,489
_00143
BACOVA_00144: BACOVA_00144 - hypothetical protein, at 13,731 to 14,279
_00144
BACOVA_00145: BACOVA_00145 - hypothetical protein, at 14,251 to 14,973
_00145
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 11.328 kb on + strand, within BACOVA_00141 at 11.379 kb on - strand, within BACOVA_00141 at 11.383 kb on - strand, within BACOVA_00141 at 11.442 kb on + strand, within BACOVA_00141 at 11.476 kb on + strand, within BACOVA_00141 at 11.606 kb on - strand, within BACOVA_00141 at 11.626 kb on + strand, within BACOVA_00141 at 11.627 kb on - strand, within BACOVA_00141 at 11.705 kb on - strand, within BACOVA_00141 at 11.746 kb on + strand, within BACOVA_00141 at 11.843 kb on - strand, within BACOVA_00141 at 11.917 kb on + strand at 11.942 kb on + strand at 11.947 kb on - strand at 11.947 kb on - strand at 11.991 kb on - strand at 11.991 kb on - strand at 11.991 kb on - strand at 11.998 kb on - strand at 12.069 kb on - strand, within BACOVA_00142 at 12.086 kb on + strand, within BACOVA_00142 at 12.086 kb on + strand, within BACOVA_00142 at 12.087 kb on - strand, within BACOVA_00142 at 12.087 kb on - strand, within BACOVA_00142 at 12.087 kb on - strand, within BACOVA_00142 at 12.087 kb on - strand, within BACOVA_00142 at 12.100 kb on - strand, within BACOVA_00142 at 12.108 kb on + strand, within BACOVA_00142 at 12.108 kb on + strand, within BACOVA_00142 at 12.108 kb on + strand, within BACOVA_00142 at 12.108 kb on + strand, within BACOVA_00142 at 12.108 kb on + strand, within BACOVA_00142 at 12.109 kb on - strand, within BACOVA_00142 at 12.110 kb on + strand, within BACOVA_00142 at 12.110 kb on + strand, within BACOVA_00142 at 12.110 kb on + strand, within BACOVA_00142 at 12.110 kb on + strand, within BACOVA_00142 at 12.110 kb on + strand, within BACOVA_00142 at 12.111 kb on - strand, within BACOVA_00142 at 12.111 kb on - strand, within BACOVA_00142 at 12.130 kb on + strand at 12.130 kb on + strand at 12.131 kb on - strand at 12.131 kb on - strand at 12.132 kb on + strand at 12.132 kb on + strand at 12.133 kb on - strand at 12.133 kb on - strand at 12.150 kb on + strand at 12.150 kb on + strand at 12.151 kb on - strand at 12.151 kb on - strand at 12.152 kb on + strand at 12.152 kb on + strand at 12.152 kb on + strand at 12.154 kb on + strand at 12.154 kb on + strand at 12.154 kb on + strand at 12.155 kb on - strand at 12.155 kb on - strand at 12.175 kb on - strand at 12.177 kb on - strand at 12.177 kb on - strand at 12.195 kb on - strand at 12.196 kb on + strand at 12.197 kb on - strand at 12.199 kb on + strand at 12.200 kb on - strand at 12.218 kb on + strand at 12.218 kb on + strand at 12.220 kb on + strand at 12.225 kb on + strand at 12.239 kb on - strand at 12.243 kb on + strand at 12.243 kb on + strand at 12.248 kb on - strand at 12.258 kb on + strand at 12.400 kb on + strand, within BACOVA_00143 at 12.476 kb on + strand, within BACOVA_00143 at 12.477 kb on - strand, within BACOVA_00143 at 12.477 kb on - strand, within BACOVA_00143 at 12.530 kb on + strand, within BACOVA_00143 at 12.530 kb on + strand, within BACOVA_00143 at 12.531 kb on - strand, within BACOVA_00143 at 12.531 kb on - strand, within BACOVA_00143 at 12.532 kb on + strand, within BACOVA_00143 at 12.584 kb on + strand, within BACOVA_00143 at 12.645 kb on - strand, within BACOVA_00143 at 12.645 kb on - strand, within BACOVA_00143 at 12.705 kb on - strand, within BACOVA_00143 at 12.705 kb on - strand, within BACOVA_00143 at 12.705 kb on - strand, within BACOVA_00143 at 12.706 kb on + strand, within BACOVA_00143 at 12.710 kb on - strand, within BACOVA_00143 at 12.751 kb on + strand, within BACOVA_00143 at 12.833 kb on + strand, within BACOVA_00143 at 12.839 kb on - strand, within BACOVA_00143 at 12.852 kb on - strand, within BACOVA_00143 at 12.852 kb on - strand, within BACOVA_00143 at 12.866 kb on + strand, within BACOVA_00143 at 12.867 kb on - strand, within BACOVA_00143 at 12.874 kb on - strand, within BACOVA_00143 at 12.926 kb on - strand, within BACOVA_00143 at 12.926 kb on - strand, within BACOVA_00143 at 12.926 kb on - strand, within BACOVA_00143 at 12.930 kb on - strand, within BACOVA_00143 at 13.001 kb on + strand, within BACOVA_00143 at 13.078 kb on + strand, within BACOVA_00143 at 13.137 kb on + strand, within BACOVA_00143 at 13.138 kb on - strand, within BACOVA_00143 at 13.138 kb on - strand, within BACOVA_00143 at 13.187 kb on - strand, within BACOVA_00143 at 13.187 kb on - strand, within BACOVA_00143 at 13.193 kb on + strand, within BACOVA_00143 at 13.193 kb on + strand, within BACOVA_00143 at 13.197 kb on + strand, within BACOVA_00143 at 13.197 kb on + strand, within BACOVA_00143 at 13.198 kb on - strand, within BACOVA_00143 at 13.198 kb on - strand, within BACOVA_00143 at 13.216 kb on + strand, within BACOVA_00143 at 13.266 kb on + strand, within BACOVA_00143 at 13.352 kb on + strand, within BACOVA_00143 at 13.370 kb on + strand at 13.373 kb on - strand at 13.373 kb on - strand at 13.376 kb on + strand at 13.376 kb on + strand at 13.377 kb on - strand at 13.379 kb on + strand at 13.380 kb on - strand at 13.408 kb on + strand at 13.436 kb on + strand at 13.436 kb on + strand at 13.437 kb on - strand at 13.437 kb on - strand at 13.488 kb on - strand at 13.510 kb on + strand at 13.557 kb on + strand at 13.558 kb on - strand at 13.591 kb on - strand at 13.597 kb on + strand at 13.658 kb on + strand at 13.689 kb on + strand at 13.689 kb on + strand at 13.689 kb on + strand at 13.690 kb on - strand at 13.718 kb on + strand at 13.718 kb on + strand at 13.719 kb on - strand at 13.733 kb on - strand at 13.733 kb on - strand at 13.740 kb on - strand at 13.804 kb on + strand, within BACOVA_00144 at 13.804 kb on + strand, within BACOVA_00144 at 13.809 kb on + strand, within BACOVA_00144 at 13.852 kb on + strand, within BACOVA_00144 at 13.853 kb on - strand, within BACOVA_00144 at 13.853 kb on - strand, within BACOVA_00144 at 13.886 kb on + strand, within BACOVA_00144 at 13.886 kb on + strand, within BACOVA_00144 at 13.889 kb on + strand, within BACOVA_00144 at 13.918 kb on + strand, within BACOVA_00144 at 13.922 kb on + strand, within BACOVA_00144 at 13.925 kb on + strand, within BACOVA_00144 at 13.943 kb on - strand, within BACOVA_00144 at 13.943 kb on - strand, within BACOVA_00144 at 13.960 kb on + strand, within BACOVA_00144 at 13.960 kb on + strand, within BACOVA_00144 at 13.961 kb on - strand, within BACOVA_00144 at 13.961 kb on - strand, within BACOVA_00144 at 13.961 kb on - strand, within BACOVA_00144 at 13.964 kb on + strand, within BACOVA_00144 at 13.964 kb on + strand, within BACOVA_00144 at 13.964 kb on + strand, within BACOVA_00144 at 13.965 kb on - strand, within BACOVA_00144 at 13.965 kb on - strand, within BACOVA_00144 at 13.965 kb on - strand, within BACOVA_00144 at 13.983 kb on + strand, within BACOVA_00144 at 13.984 kb on - strand, within BACOVA_00144 at 13.989 kb on - strand, within BACOVA_00144 at 13.991 kb on - strand, within BACOVA_00144 at 13.991 kb on - strand, within BACOVA_00144 at 14.021 kb on + strand, within BACOVA_00144 at 14.031 kb on + strand, within BACOVA_00144 at 14.032 kb on - strand, within BACOVA_00144 at 14.069 kb on - strand, within BACOVA_00144 at 14.094 kb on + strand, within BACOVA_00144 at 14.140 kb on + strand, within BACOVA_00144 at 14.157 kb on + strand, within BACOVA_00144 at 14.158 kb on - strand, within BACOVA_00144 at 14.158 kb on - strand, within BACOVA_00144 at 14.160 kb on + strand, within BACOVA_00144 at 14.170 kb on - strand, within BACOVA_00144 at 14.201 kb on + strand, within BACOVA_00144 at 14.253 kb on - strand at 14.260 kb on - strand at 14.260 kb on - strand at 14.291 kb on - strand at 14.291 kb on - strand at 14.472 kb on + strand, within BACOVA_00145 at 14.473 kb on - strand, within BACOVA_00145
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 11,328 + BACOVA_00141 0.18 +1.0 11,379 - BACOVA_00141 0.24 -1.9 11,383 - BACOVA_00141 0.25 -1.3 11,442 + BACOVA_00141 0.32 +1.7 11,476 + BACOVA_00141 0.36 +0.2 11,606 - BACOVA_00141 0.52 -1.0 11,626 + BACOVA_00141 0.55 +1.4 11,627 - BACOVA_00141 0.55 -0.4 11,705 - BACOVA_00141 0.65 -1.8 11,746 + BACOVA_00141 0.70 -2.7 11,843 - BACOVA_00141 0.82 +0.2 11,917 + -1.2 11,942 + +1.3 11,947 - -0.1 11,947 - -0.5 11,991 - -0.8 11,991 - +0.4 11,991 - -0.8 11,998 - -0.6 12,069 - BACOVA_00142 0.48 -0.5 12,086 + BACOVA_00142 0.63 +0.5 12,086 + BACOVA_00142 0.63 -0.9 12,087 - BACOVA_00142 0.64 +0.0 12,087 - BACOVA_00142 0.64 +0.9 12,087 - BACOVA_00142 0.64 +0.5 12,087 - BACOVA_00142 0.64 -1.6 12,100 - BACOVA_00142 0.76 -0.6 12,108 + BACOVA_00142 0.83 +0.2 12,108 + BACOVA_00142 0.83 -0.1 12,108 + BACOVA_00142 0.83 +0.2 12,108 + BACOVA_00142 0.83 +0.2 12,108 + BACOVA_00142 0.83 -0.7 12,109 - BACOVA_00142 0.84 +0.0 12,110 + BACOVA_00142 0.85 +0.1 12,110 + BACOVA_00142 0.85 +0.5 12,110 + BACOVA_00142 0.85 +0.6 12,110 + BACOVA_00142 0.85 +1.2 12,110 + BACOVA_00142 0.85 +1.5 12,111 - BACOVA_00142 0.86 +0.3 12,111 - BACOVA_00142 0.86 +0.3 12,130 + +1.2 12,130 + +0.1 12,131 - +1.0 12,131 - +0.5 12,132 + -0.5 12,132 + +1.0 12,133 - -0.8 12,133 - +2.5 12,150 + +0.5 12,150 + -1.9 12,151 - -0.1 12,151 - +0.2 12,152 + +0.8 12,152 + +0.5 12,152 + +0.2 12,154 + -0.6 12,154 + -0.0 12,154 + -0.2 12,155 - +0.1 12,155 - +0.5 12,175 - -0.2 12,177 - -1.0 12,177 - -1.4 12,195 - -1.8 12,196 + -0.3 12,197 - +0.1 12,199 + +0.9 12,200 - +0.6 12,218 + -0.4 12,218 + -0.0 12,220 + +0.5 12,225 + -0.5 12,239 - +0.3 12,243 + -1.8 12,243 + +0.8 12,248 - -0.5 12,258 + +0.8 12,400 + BACOVA_00143 0.12 -0.3 12,476 + BACOVA_00143 0.18 +0.6 12,477 - BACOVA_00143 0.18 -0.9 12,477 - BACOVA_00143 0.18 -0.0 12,530 + BACOVA_00143 0.23 -0.2 12,530 + BACOVA_00143 0.23 -0.5 12,531 - BACOVA_00143 0.23 +0.6 12,531 - BACOVA_00143 0.23 -0.4 12,532 + BACOVA_00143 0.23 +0.7 12,584 + BACOVA_00143 0.27 -0.7 12,645 - BACOVA_00143 0.32 -1.1 12,645 - BACOVA_00143 0.32 +0.0 12,705 - BACOVA_00143 0.37 +0.1 12,705 - BACOVA_00143 0.37 +0.7 12,705 - BACOVA_00143 0.37 +0.1 12,706 + BACOVA_00143 0.37 -0.0 12,710 - BACOVA_00143 0.37 -0.2 12,751 + BACOVA_00143 0.40 +0.1 12,833 + BACOVA_00143 0.47 -1.1 12,839 - BACOVA_00143 0.48 -0.6 12,852 - BACOVA_00143 0.49 -0.4 12,852 - BACOVA_00143 0.49 -0.6 12,866 + BACOVA_00143 0.50 -0.1 12,867 - BACOVA_00143 0.50 -0.8 12,874 - BACOVA_00143 0.50 -1.2 12,926 - BACOVA_00143 0.55 +0.8 12,926 - BACOVA_00143 0.55 +1.2 12,926 - BACOVA_00143 0.55 +0.2 12,930 - BACOVA_00143 0.55 -3.1 13,001 + BACOVA_00143 0.61 -0.9 13,078 + BACOVA_00143 0.67 -0.9 13,137 + BACOVA_00143 0.72 -0.5 13,138 - BACOVA_00143 0.72 +0.4 13,138 - BACOVA_00143 0.72 -0.0 13,187 - BACOVA_00143 0.76 -0.2 13,187 - BACOVA_00143 0.76 -0.4 13,193 + BACOVA_00143 0.76 +0.6 13,193 + BACOVA_00143 0.76 +0.2 13,197 + BACOVA_00143 0.76 -1.1 13,197 + BACOVA_00143 0.76 +0.8 13,198 - BACOVA_00143 0.76 -0.2 13,198 - BACOVA_00143 0.76 -1.7 13,216 + BACOVA_00143 0.78 +1.3 13,266 + BACOVA_00143 0.82 -0.2 13,352 + BACOVA_00143 0.89 +0.1 13,370 + -1.8 13,373 - -0.5 13,373 - +0.7 13,376 + -0.0 13,376 + +0.3 13,377 - -0.8 13,379 + +1.4 13,380 - -0.9 13,408 + +0.1 13,436 + -0.9 13,436 + -1.3 13,437 - -0.4 13,437 - -3.6 13,488 - -0.7 13,510 + +0.6 13,557 + +1.0 13,558 - -2.4 13,591 - +0.6 13,597 + +0.5 13,658 + +0.1 13,689 + -0.8 13,689 + -0.8 13,689 + +0.5 13,690 - -0.8 13,718 + +1.2 13,718 + +0.8 13,719 - +1.8 13,733 - -0.3 13,733 - +0.1 13,740 - +0.4 13,804 + BACOVA_00144 0.13 +0.9 13,804 + BACOVA_00144 0.13 +0.3 13,809 + BACOVA_00144 0.14 -1.1 13,852 + BACOVA_00144 0.22 +0.5 13,853 - BACOVA_00144 0.22 -0.0 13,853 - BACOVA_00144 0.22 +0.2 13,886 + BACOVA_00144 0.28 -0.2 13,886 + BACOVA_00144 0.28 -0.1 13,889 + BACOVA_00144 0.29 +0.3 13,918 + BACOVA_00144 0.34 -0.8 13,922 + BACOVA_00144 0.35 +0.6 13,925 + BACOVA_00144 0.35 -1.2 13,943 - BACOVA_00144 0.39 -0.1 13,943 - BACOVA_00144 0.39 +0.2 13,960 + BACOVA_00144 0.42 +1.2 13,960 + BACOVA_00144 0.42 +0.2 13,961 - BACOVA_00144 0.42 +0.7 13,961 - BACOVA_00144 0.42 -0.0 13,961 - BACOVA_00144 0.42 -0.5 13,964 + BACOVA_00144 0.42 +0.0 13,964 + BACOVA_00144 0.42 +0.4 13,964 + BACOVA_00144 0.42 -0.5 13,965 - BACOVA_00144 0.43 -1.2 13,965 - BACOVA_00144 0.43 +0.5 13,965 - BACOVA_00144 0.43 +0.6 13,983 + BACOVA_00144 0.46 -0.7 13,984 - BACOVA_00144 0.46 -0.8 13,989 - BACOVA_00144 0.47 -0.6 13,991 - BACOVA_00144 0.47 +1.1 13,991 - BACOVA_00144 0.47 -1.9 14,021 + BACOVA_00144 0.53 +0.2 14,031 + BACOVA_00144 0.55 +0.2 14,032 - BACOVA_00144 0.55 +0.9 14,069 - BACOVA_00144 0.62 -2.2 14,094 + BACOVA_00144 0.66 -0.4 14,140 + BACOVA_00144 0.74 +1.0 14,157 + BACOVA_00144 0.78 +0.3 14,158 - BACOVA_00144 0.78 +0.9 14,158 - BACOVA_00144 0.78 -0.0 14,160 + BACOVA_00144 0.78 -0.8 14,170 - BACOVA_00144 0.80 -0.7 14,201 + BACOVA_00144 0.86 +0.7 14,253 - -0.5 14,260 - -0.0 14,260 - +0.4 14,291 - +0.3 14,291 - -1.0 14,472 + BACOVA_00145 0.31 -0.4 14,473 - BACOVA_00145 0.31 -0.9
Or see this region's nucleotide sequence