Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sopA and sopA overlap by 1 nucleotides sopA and tnp-IS3 are separated by 887 nucleotides
NIAGMN_28895: sopA - plasmid-partitioning protein SopA, at 84,193 to 85,164
sopA
NIAGMN_28900: sopA - plasmid-partitioning protein SopA, at 85,164 to 86,330
sopA
NIAGMN_28905: tnp-IS3 - IS3 family transposase, at 87,218 to 87,544
tnp-IS3
Position (kb) 85
86
87 Strain fitness (log2 ratio) -2
-1
0
1
2 at 84.168 kb on - strand at 84.168 kb on - strand at 84.173 kb on + strand at 84.173 kb on + strand at 84.173 kb on + strand at 84.174 kb on - strand at 84.174 kb on - strand at 84.174 kb on - strand at 84.179 kb on - strand at 84.179 kb on - strand at 84.219 kb on + strand at 84.299 kb on + strand, within sopA at 84.300 kb on - strand, within sopA at 84.300 kb on - strand, within sopA at 84.300 kb on - strand, within sopA at 84.305 kb on - strand, within sopA at 84.305 kb on - strand, within sopA at 84.305 kb on - strand, within sopA at 84.346 kb on - strand, within sopA at 84.370 kb on - strand, within sopA at 84.444 kb on + strand, within sopA at 84.444 kb on + strand, within sopA at 84.595 kb on - strand, within sopA at 84.768 kb on - strand, within sopA at 84.913 kb on - strand, within sopA at 84.913 kb on - strand, within sopA at 84.970 kb on - strand, within sopA at 85.108 kb on - strand at 85.135 kb on - strand at 85.413 kb on - strand, within sopA at 85.570 kb on - strand, within sopA at 85.618 kb on - strand, within sopA at 85.628 kb on - strand, within sopA at 85.628 kb on - strand, within sopA at 85.725 kb on - strand, within sopA at 85.752 kb on - strand, within sopA at 85.790 kb on - strand, within sopA at 85.874 kb on - strand, within sopA at 86.064 kb on - strand, within sopA at 86.187 kb on + strand, within sopA at 86.206 kb on - strand, within sopA at 86.206 kb on - strand, within sopA at 86.299 kb on - strand at 86.345 kb on - strand at 86.453 kb on + strand at 86.454 kb on - strand at 86.466 kb on - strand at 86.466 kb on - strand at 86.466 kb on - strand at 86.466 kb on - strand at 86.478 kb on + strand at 86.478 kb on + strand at 86.479 kb on - strand at 86.479 kb on - strand at 86.491 kb on + strand at 86.492 kb on - strand at 86.492 kb on - strand at 86.492 kb on - strand at 86.494 kb on + strand at 86.494 kb on + strand at 86.495 kb on - strand at 86.531 kb on - strand at 86.531 kb on - strand at 86.576 kb on + strand at 86.577 kb on - strand at 86.584 kb on - strand at 86.584 kb on - strand at 86.584 kb on - strand at 86.584 kb on - strand at 86.604 kb on + strand at 86.604 kb on + strand at 86.605 kb on - strand at 86.629 kb on + strand at 86.630 kb on - strand at 86.630 kb on - strand at 86.635 kb on + strand at 86.635 kb on + strand at 86.635 kb on + strand at 86.635 kb on + strand at 86.635 kb on + strand at 86.636 kb on - strand at 86.636 kb on - strand at 86.636 kb on - strand at 86.662 kb on - strand at 86.664 kb on + strand at 86.665 kb on - strand at 86.665 kb on - strand at 86.665 kb on - strand at 86.665 kb on - strand at 86.702 kb on + strand at 86.703 kb on - strand at 86.784 kb on - strand at 86.805 kb on - strand at 86.805 kb on - strand at 86.853 kb on + strand at 86.854 kb on - strand at 86.862 kb on + strand at 86.862 kb on + strand at 86.862 kb on + strand at 86.862 kb on + strand at 86.862 kb on + strand at 86.863 kb on - strand at 86.863 kb on - strand at 86.908 kb on - strand at 86.908 kb on - strand at 86.920 kb on - strand at 86.962 kb on + strand at 86.962 kb on + strand at 86.963 kb on - strand at 86.963 kb on - strand at 86.963 kb on - strand at 86.997 kb on + strand at 86.998 kb on - strand at 86.998 kb on - strand at 87.035 kb on - strand at 87.073 kb on + strand at 87.073 kb on + strand at 87.107 kb on + strand at 87.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 84,168 - +0.6 84,168 - +0.5 84,173 + +0.3 84,173 + -0.5 84,173 + +0.6 84,174 - +0.4 84,174 - +0.6 84,174 - +0.1 84,179 - +0.4 84,179 - +0.1 84,219 + -1.4 84,299 + sopA NIAGMN_28895 0.11 -1.1 84,300 - sopA NIAGMN_28895 0.11 -0.1 84,300 - sopA NIAGMN_28895 0.11 +0.9 84,300 - sopA NIAGMN_28895 0.11 +1.9 84,305 - sopA NIAGMN_28895 0.12 -1.1 84,305 - sopA NIAGMN_28895 0.12 +0.9 84,305 - sopA NIAGMN_28895 0.12 +0.9 84,346 - sopA NIAGMN_28895 0.16 +0.4 84,370 - sopA NIAGMN_28895 0.18 -1.4 84,444 + sopA NIAGMN_28895 0.26 -0.4 84,444 + sopA NIAGMN_28895 0.26 +0.9 84,595 - sopA NIAGMN_28895 0.41 -0.4 84,768 - sopA NIAGMN_28895 0.59 -0.1 84,913 - sopA NIAGMN_28895 0.74 -1.1 84,913 - sopA NIAGMN_28895 0.74 -0.1 84,970 - sopA NIAGMN_28895 0.80 +0.4 85,108 - -0.9 85,135 - +1.4 85,413 - sopA NIAGMN_28900 0.21 -0.1 85,570 - sopA NIAGMN_28900 0.35 -0.1 85,618 - sopA NIAGMN_28900 0.39 -0.1 85,628 - sopA NIAGMN_28900 0.40 +0.9 85,628 - sopA NIAGMN_28900 0.40 +1.4 85,725 - sopA NIAGMN_28900 0.48 -1.1 85,752 - sopA NIAGMN_28900 0.50 -1.1 85,790 - sopA NIAGMN_28900 0.54 +1.9 85,874 - sopA NIAGMN_28900 0.61 +1.9 86,064 - sopA NIAGMN_28900 0.77 -0.5 86,187 + sopA NIAGMN_28900 0.88 +0.9 86,206 - sopA NIAGMN_28900 0.89 +0.9 86,206 - sopA NIAGMN_28900 0.89 -0.1 86,299 - -0.6 86,345 - +1.7 86,453 + +0.4 86,454 - -1.0 86,466 - +0.4 86,466 - +0.7 86,466 - +0.1 86,466 - -0.3 86,478 + -0.4 86,478 + -0.4 86,479 - +0.3 86,479 - -0.0 86,491 + -0.1 86,492 - -1.8 86,492 - -0.2 86,492 - -0.1 86,494 + +1.5 86,494 + -0.2 86,495 - -0.0 86,531 - +0.4 86,531 - -0.7 86,576 + +0.1 86,577 - -0.9 86,584 - -0.4 86,584 - -0.1 86,584 - -1.0 86,584 - -0.1 86,604 + -1.4 86,604 + +1.3 86,605 - +0.2 86,629 + -2.0 86,630 - -0.3 86,630 - -0.3 86,635 + -0.6 86,635 + +0.0 86,635 + -0.2 86,635 + -1.2 86,635 + -0.5 86,636 - -1.5 86,636 - +1.9 86,636 - -1.6 86,662 - -0.2 86,664 + -0.1 86,665 - +0.4 86,665 - -0.4 86,665 - -1.2 86,665 - -0.2 86,702 + +0.9 86,703 - +0.2 86,784 - -0.6 86,805 - -0.1 86,805 - -0.3 86,853 + +0.1 86,854 - +0.9 86,862 + -0.1 86,862 + -0.4 86,862 + +0.1 86,862 + -0.4 86,862 + -0.4 86,863 - +1.4 86,863 - +0.3 86,908 - -0.2 86,908 - +0.6 86,920 - +1.4 86,962 + -0.1 86,962 + -0.1 86,963 - -0.3 86,963 - +0.6 86,963 - +1.2 86,997 + -1.1 86,998 - +0.6 86,998 - -1.0 87,035 - -0.8 87,073 + -1.9 87,073 + +0.3 87,107 + +0.1 87,108 - +0.9
Or see this region's nucleotide sequence