Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27495

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteCs1768 and NIAGMN_27485 overlap by 29 nucleotidesNIAGMN_27485 and NIAGMN_27490 overlap by 17 nucleotidesNIAGMN_27490 and hipB are separated by 76 nucleotideshipB and NIAGMN_27500 are separated by 263 nucleotidesNIAGMN_27500 and NIAGMN_27505 are separated by 72 nucleotidesNIAGMN_27505 and NIAGMN_27510 are separated by 22 nucleotides NIAGMN_27480: eCs1768 - DNA-binding protein, at 5,327,653 to 5,328,693 eCs1768 NIAGMN_27485: NIAGMN_27485 - Putative bacterial toxin ydaT, at 5,328,665 to 5,329,216 _27485 NIAGMN_27490: NIAGMN_27490 - transcriptional regulator, at 5,329,200 to 5,329,427 _27490 NIAGMN_27495: hipB - transcriptional regulator, at 5,329,504 to 5,329,911 hipB NIAGMN_27500: NIAGMN_27500 - hypothetical protein, at 5,330,175 to 5,330,474 _27500 NIAGMN_27505: NIAGMN_27505 - Uncharacterized protein YdfC, at 5,330,547 to 5,330,765 _27505 NIAGMN_27510: NIAGMN_27510 - hypothetical protein, at 5,330,788 to 5,331,195 _27510 Position (kb) 5329 5330Strain fitness (log2 ratio) -1 0 1at 5328.676 kb on + strandat 5328.732 kb on + strand, within NIAGMN_27485at 5328.732 kb on + strand, within NIAGMN_27485at 5328.732 kb on + strand, within NIAGMN_27485at 5328.879 kb on + strand, within NIAGMN_27485at 5328.879 kb on + strand, within NIAGMN_27485at 5328.880 kb on - strand, within NIAGMN_27485at 5328.983 kb on - strand, within NIAGMN_27485

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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5,328,676 + +1.2
5,328,732 + NIAGMN_27485 0.12 -1.1
5,328,732 + NIAGMN_27485 0.12 +0.9
5,328,732 + NIAGMN_27485 0.12 -1.1
5,328,879 + NIAGMN_27485 0.39 +0.4
5,328,879 + NIAGMN_27485 0.39 -0.0
5,328,880 - NIAGMN_27485 0.39 +1.2
5,328,983 - NIAGMN_27485 0.58 -0.4

Or see this region's nucleotide sequence