Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26790

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsohB and yciK are separated by 219 nucleotidesyciK and cobO overlap by 4 nucleotidescobO and rluB are separated by 39 nucleotides NIAGMN_26785: sohB - protease SohB, at 5,215,423 to 5,216,472 sohB NIAGMN_26790: yciK - YciK family oxidoreductase, at 5,216,692 to 5,217,450 yciK NIAGMN_26795: cobO - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 5,217,447 to 5,218,037 cobO NIAGMN_26800: rluB - 23S rRNA pseudouridine(2605) synthase RluB, at 5,218,077 to 5,218,949 rluB Position (kb) 5216 5217 5218Strain fitness (log2 ratio) -1 0 1at 5215.819 kb on - strand, within sohBat 5216.846 kb on + strand, within yciKat 5217.719 kb on + strand, within cobOat 5217.837 kb on + strand, within cobOat 5217.840 kb on - strand, within cobOat 5217.849 kb on + strand, within cobOat 5218.234 kb on + strand, within rluB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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5,215,819 - sohB NIAGMN_26785 0.38 +0.8
5,216,846 + yciK NIAGMN_26790 0.20 -1.1
5,217,719 + cobO NIAGMN_26795 0.46 -1.5
5,217,837 + cobO NIAGMN_26795 0.66 +1.2
5,217,840 - cobO NIAGMN_26795 0.66 -0.1
5,217,849 + cobO NIAGMN_26795 0.68 +1.2
5,218,234 + rluB NIAGMN_26800 0.18 -0.8

Or see this region's nucleotide sequence