Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25635

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_25630 and NIAGMN_25635 are separated by 820 nucleotidesNIAGMN_25635 and yncG are separated by 75 nucleotidesyncG and ansP are separated by 266 nucleotides NIAGMN_25630: NIAGMN_25630 - type VI secretion system tip protein VgrG, at 5,001,570 to 5,002,163 _25630 NIAGMN_25635: NIAGMN_25635 - Uncharacterized protein YncH, at 5,002,984 to 5,003,196 _25635 NIAGMN_25640: yncG - Uncharacterized GST-like protein YncG, at 5,003,272 to 5,003,889 yncG NIAGMN_25645: ansP - L-asparagine permease, at 5,004,156 to 5,005,655 ansP Position (kb) 5002 5003 5004Strain fitness (log2 ratio) -1 0 1at 5003.408 kb on + strand, within yncGat 5004.120 kb on + strandat 5004.120 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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5,003,408 + yncG NIAGMN_25640 0.22 +0.2
5,004,120 + +0.6
5,004,120 + +1.2

Or see this region's nucleotide sequence