Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25545

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespR1 and narU are separated by 305 nucleotidesnarU and narZ are separated by 81 nucleotides NIAGMN_25540: espR1 - T3SS effector leucine-rich repeat protein EspR1, at 4,981,040 to 4,982,299 espR1 NIAGMN_25545: narU - nitrate/nitrite transporter NarU, at 4,982,605 to 4,983,993 narU NIAGMN_25550: narZ - nitrate reductase Z subunit alpha, at 4,984,075 to 4,987,815 narZ Position (kb) 4982 4983 4984Strain fitness (log2 ratio) -1 0 1at 4982.129 kb on - strand, within espR1at 4982.330 kb on + strandat 4983.125 kb on + strand, within narUat 4983.609 kb on + strand, within narUat 4983.660 kb on + strand, within narUat 4983.931 kb on + strandat 4983.932 kb on - strandat 4984.011 kb on + strandat 4984.491 kb on + strand, within narZat 4984.519 kb on + strand, within narZat 4984.549 kb on - strand, within narZat 4984.704 kb on - strand, within narZat 4984.704 kb on - strand, within narZat 4984.819 kb on + strand, within narZat 4984.820 kb on - strand, within narZat 4984.820 kb on - strand, within narZat 4984.886 kb on + strand, within narZat 4984.892 kb on - strand, within narZat 4984.903 kb on - strand, within narZ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,982,129 - espR1 NIAGMN_25540 0.86 -0.0
4,982,330 + +1.2
4,983,125 + narU NIAGMN_25545 0.37 -0.7
4,983,609 + narU NIAGMN_25545 0.72 +0.6
4,983,660 + narU NIAGMN_25545 0.76 +0.2
4,983,931 + +1.2
4,983,932 - -0.4
4,984,011 + -1.0
4,984,491 + narZ NIAGMN_25550 0.11 +0.1
4,984,519 + narZ NIAGMN_25550 0.12 +0.0
4,984,549 - narZ NIAGMN_25550 0.13 +0.6
4,984,704 - narZ NIAGMN_25550 0.17 +0.4
4,984,704 - narZ NIAGMN_25550 0.17 +1.7
4,984,819 + narZ NIAGMN_25550 0.20 -0.1
4,984,820 - narZ NIAGMN_25550 0.20 -0.6
4,984,820 - narZ NIAGMN_25550 0.20 -0.2
4,984,886 + narZ NIAGMN_25550 0.22 -0.8
4,984,892 - narZ NIAGMN_25550 0.22 +1.2
4,984,903 - narZ NIAGMN_25550 0.22 +0.3

Or see this region's nucleotide sequence