Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25435

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdosC and dosP are separated by 24 nucleotidesdosP and dosP overlap by 4 nucleotides NIAGMN_25430: dosC - diguanylate cyclase DosC, at 4,957,529 to 4,958,911 dosC NIAGMN_25435: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 4,958,936 to 4,960,177 dosP NIAGMN_25440: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 4,960,174 to 4,961,325 dosP Position (kb) 4958 4959 4960 4961Strain fitness (log2 ratio) -1 0 1 2at 4957.994 kb on - strand, within dosCat 4958.116 kb on + strand, within dosCat 4958.211 kb on - strand, within dosCat 4958.290 kb on + strand, within dosCat 4958.350 kb on + strand, within dosCat 4958.351 kb on - strand, within dosCat 4958.521 kb on + strand, within dosCat 4958.566 kb on + strand, within dosCat 4958.856 kb on - strandat 4959.109 kb on + strand, within dosPat 4959.110 kb on - strand, within dosPat 4960.899 kb on + strand, within dosP

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,957,994 - dosC NIAGMN_25430 0.34 +0.5
4,958,116 + dosC NIAGMN_25430 0.42 -0.7
4,958,211 - dosC NIAGMN_25430 0.49 +2.2
4,958,290 + dosC NIAGMN_25430 0.55 -0.3
4,958,350 + dosC NIAGMN_25430 0.59 -0.8
4,958,351 - dosC NIAGMN_25430 0.59 -0.7
4,958,521 + dosC NIAGMN_25430 0.72 -0.0
4,958,566 + dosC NIAGMN_25430 0.75 +0.2
4,958,856 - -1.7
4,959,109 + dosP NIAGMN_25435 0.14 +0.4
4,959,110 - dosP NIAGMN_25435 0.14 +1.6
4,960,899 + dosP NIAGMN_25440 0.63 +1.0

Or see this region's nucleotide sequence