Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24885

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpurB and hflD are separated by 3 nucleotideshflD and mnmA are separated by 35 nucleotides NIAGMN_24880: purB - adenylosuccinate lyase, at 4,846,086 to 4,847,456 purB NIAGMN_24885: hflD - high frequency lysogenization protein HflD, at 4,847,460 to 4,848,101 hflD NIAGMN_24890: mnmA - tRNA 2-thiouridine(34) synthase MnmA, at 4,848,137 to 4,849,243 mnmA Position (kb) 4847 4848 4849Strain fitness (log2 ratio) -1 0 1 2 3at 4847.689 kb on + strand, within hflDat 4847.817 kb on - strand, within hflDat 4847.817 kb on - strand, within hflDat 4847.973 kb on - strand, within hflDat 4847.976 kb on - strand, within hflDat 4848.086 kb on - strandat 4848.122 kb on - strandat 4848.122 kb on - strandat 4848.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,847,689 + hflD NIAGMN_24885 0.36 +1.3
4,847,817 - hflD NIAGMN_24885 0.56 -1.1
4,847,817 - hflD NIAGMN_24885 0.56 +2.8
4,847,973 - hflD NIAGMN_24885 0.80 -0.5
4,847,976 - hflD NIAGMN_24885 0.80 -0.3
4,848,086 - -1.5
4,848,122 - -1.4
4,848,122 - +0.7
4,848,135 - -0.3

Or see this region's nucleotide sequence