Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24520

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_24510 and rusA are separated by 12 nucleotidesrusA and NIAGMN_24520 overlap by 4 nucleotidesNIAGMN_24520 and NIAGMN_24525 are separated by 453 nucleotidesNIAGMN_24525 and NIAGMN_24530 overlap by 4 nucleotides NIAGMN_24510: NIAGMN_24510 - DUF968 domain-containing protein, at 4,785,522 to 4,786,571 _24510 NIAGMN_24515: rusA - Endodeoxyribonuclease RusA, at 4,786,584 to 4,786,958 rusA NIAGMN_24520: NIAGMN_24520 - antitermination protein, at 4,786,955 to 4,787,776 _24520 NIAGMN_24525: NIAGMN_24525 - TciA/TerB-like protein, at 4,788,230 to 4,788,376 _24525 NIAGMN_24530: NIAGMN_24530 - TciB/TerA-like protein, at 4,788,373 to 4,788,540 _24530 Position (kb) 4786 4787 4788Strain fitness (log2 ratio) -1 0 1at 4787.636 kb on - strand, within NIAGMN_24520at 4787.644 kb on - strand, within NIAGMN_24520at 4787.905 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,787,636 - NIAGMN_24520 0.83 +0.3
4,787,644 - NIAGMN_24520 0.84 -1.2
4,787,905 + +0.3

Or see this region's nucleotide sequence