Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24435

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_24425 and NIAGMN_24430 are separated by 237 nucleotidesNIAGMN_24430 and ydaS are separated by 124 nucleotidesydaS and NIAGMN_24440 overlap by 17 nucleotidesNIAGMN_24440 and eCs1768 are separated by 68 nucleotides NIAGMN_24425: NIAGMN_24425 - DUF1391 domain-containing protein, at 4,777,944 to 4,778,174 _24425 NIAGMN_24430: NIAGMN_24430 - Prophage repressor RacR, at 4,778,412 to 4,778,888 _24430 NIAGMN_24435: ydaS - transcriptional regulator, at 4,779,013 to 4,779,336 ydaS NIAGMN_24440: NIAGMN_24440 - Rha family transcriptional regulator, at 4,779,320 to 4,779,745 _24440 NIAGMN_24445: eCs1768 - phage replisome organizer, at 4,779,814 to 4,780,851 eCs1768 Position (kb) 4779 4780Strain fitness (log2 ratio) -1 0 1at 4778.091 kb on - strand, within NIAGMN_24425at 4778.232 kb on - strandat 4778.232 kb on - strandat 4779.028 kb on + strandat 4779.223 kb on + strand, within ydaSat 4779.227 kb on + strand, within ydaSat 4780.308 kb on + strand, within eCs1768

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,778,091 - NIAGMN_24425 0.64 -1.7
4,778,232 - -1.0
4,778,232 - -0.3
4,779,028 + +1.3
4,779,223 + ydaS NIAGMN_24435 0.65 -1.0
4,779,227 + ydaS NIAGMN_24435 0.66 -1.7
4,780,308 + eCs1768 NIAGMN_24445 0.48 +1.3

Or see this region's nucleotide sequence